© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|6561 |
| Gene name | |
| Location | Contig_60:52349..53360 |
| Strand | - |
| Gene length (bp) | 1011 |
| Transcript length (bp) | 1011 |
| Coding sequence length (bp) | 1011 |
| Protein length (aa) | 337 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00808 | CBFD_NFYB_HMF | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 1.4E-12 | 220 | 282 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6C6M5|DPB3_YARLI | DNA polymerase epsilon subunit C OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=DPB3 PE=3 SV=1 | 213 | 328 | 3.0E-23 |
| sp|Q14919|NC2A_HUMAN | Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3 | 220 | 333 | 1.0E-22 |
| sp|A0JPP1|NC2A_RAT | Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1 | 220 | 305 | 3.0E-22 |
| sp|Q2YDP3|NC2A_BOVIN | Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1 | 220 | 305 | 5.0E-22 |
| sp|Q9D6N5|NC2A_MOUSE | Dr1-associated corepressor OS=Mus musculus GN=Drap1 PE=1 SV=3 | 220 | 305 | 5.0E-22 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6C6M5|DPB3_YARLI | DNA polymerase epsilon subunit C OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=DPB3 PE=3 SV=1 | 213 | 328 | 3.0E-23 |
| sp|Q14919|NC2A_HUMAN | Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3 | 220 | 333 | 1.0E-22 |
| sp|A0JPP1|NC2A_RAT | Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1 | 220 | 305 | 3.0E-22 |
| sp|Q2YDP3|NC2A_BOVIN | Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1 | 220 | 305 | 5.0E-22 |
| sp|Q9D6N5|NC2A_MOUSE | Dr1-associated corepressor OS=Mus musculus GN=Drap1 PE=1 SV=3 | 220 | 305 | 5.0E-22 |
| sp|P40096|NCB1_YEAST | Negative cofactor 2 complex subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUR6 PE=1 SV=1 | 217 | 294 | 6.0E-21 |
| sp|Q10315|DPB3_SCHPO | DNA polymerase epsilon subunit C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dpb3 PE=1 SV=1 | 218 | 299 | 2.0E-20 |
| sp|Q54DA1|NC2A_DICDI | Dr1-associated corepressor homolog OS=Dictyostelium discoideum GN=drap1 PE=3 SV=1 | 218 | 311 | 3.0E-20 |
| sp|Q9FMV5|NFYC4_ARATH | Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1 | 220 | 310 | 6.0E-09 |
| sp|Q9ZVL3|NFYC3_ARATH | Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=2 SV=1 | 221 | 312 | 8.0E-09 |
| sp|Q8LCG7|NFYC2_ARATH | Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=2 SV=2 | 221 | 305 | 2.0E-08 |
| sp|Q02516|HAP5_YEAST | Transcriptional activator HAP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HAP5 PE=1 SV=1 | 221 | 298 | 3.0E-08 |
| sp|Q8L4B2|NFYC9_ARATH | Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1 | 221 | 304 | 3.0E-08 |
| sp|Q9SMP0|NFYC1_ARATH | Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1 | 220 | 304 | 5.0E-08 |
| sp|Q9FGP7|NFYC6_ARATH | Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana GN=NFYC6 PE=2 SV=1 | 220 | 296 | 2.0E-07 |
| sp|Q13952|NFYC_HUMAN | Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3 | 220 | 302 | 6.0E-07 |
| sp|Q62725|NFYC_RAT | Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1 | 220 | 302 | 5.0E-06 |
| sp|P70353|NFYC_MOUSE | Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=1 SV=2 | 220 | 302 | 5.0E-06 |
| sp|Q5RA23|NFYC_PONAB | Nuclear transcription factor Y subunit gamma OS=Pongo abelii GN=NFYC PE=2 SV=1 | 220 | 302 | 5.0E-06 |
| sp|Q5E9X1|NFYC_BOVIN | Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC PE=2 SV=1 | 220 | 302 | 6.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 53 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Histone-like TF |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|6561 MSADESNSTSGYAPKSPDLSSFYSASPTLPASQQVGHPSLEQQQGEGYKEQRLANPYSSSAFPSTSVYTPPTLTF PTSHPIFVPEWRCHPPPSAYSAQQQYYHSSSALPPFNHPSRTPYGYREPLAGQRQEHQQPPPPDQEEIAHYRQQP IQPGLSLIPGASVTSPSSTGSADMPPRRRAAAAAAAAVAAEAAASSSSPPPSPPLPPSAPAVEPSPVKTKFPTAR IKRIMQADEEVGKVAQQAPIAVGKALELFMVQLVNRGAEVARNKGARKVTAAMLKQVIETEEQWDFLREIVSRVD LEKDGSRAKAKTESESDEEVVEPKRRGRGGGRKKKE* |
| Coding | >OphauB2|6561 ATGTCGGCAGACGAGTCCAATTCCACGTCGGGCTACGCGCCAAAGTCGCCAGACCTGTCGTCCTTTTACTCGGCC AGCCCCACTTTGCCCGCATCACAACAAGTCGGCCATCCGAGCCTTGAGCAACAGCAGGGAGAAGGCTATAAAGAG CAACGTCTCGCCAATCCATATTCTTCGTCGGCTTTTCCCTCAACCTCGGTTTACACCCCCCCAACCCTCACTTTC CCCACCAGCCACCCTATATTTGTCCCAGAGTGGCGCTGTCATCCACCGCCGTCTGCTTATAGCGCGCAGCAGCAG TACTATCATTCTTCCTCTGCGCTGCCGCCCTTTAATCACCCATCCCGGACGCCATACGGCTACAGGGAACCTCTT GCTGGGCAGCGGCAGGAGCACCAACAGCCGCCGCCGCCTGACCAAGAAGAAATAGCTCATTACAGGCAACAGCCT ATTCAACCGGGCTTGTCCTTAATTCCTGGCGCCTCTGTCACCAGTCCCTCATCCACTGGCAGTGCCGACATGCCA CCACGAAGACGAGCTGCTGCCGCCGCCGCCGCCGCCGTGGCTGCTGAAGCGGCTGCTTCTTCATCATCCCCTCCC CCCTCACCGCCTCTTCCGCCTTCTGCCCCTGCGGTGGAGCCGTCACCTGTCAAGACAAAGTTCCCGACGGCCAGG ATAAAGCGCATCATGCAGGCCGACGAAGAAGTGGGCAAAGTTGCCCAGCAAGCACCAATTGCCGTGGGAAAAGCT CTTGAACTTTTCATGGTCCAGCTCGTCAATAGGGGCGCCGAGGTGGCCAGGAACAAGGGAGCTCGAAAGGTGACG GCCGCAATGCTCAAGCAAGTCATTGAGACGGAGGAGCAATGGGACTTTCTTCGCGAAATCGTCAGCCGCGTCGAT CTCGAAAAGGATGGCTCACGGGCCAAGGCCAAGACGGAGAGCGAGAGCGACGAAGAAGTGGTGGAGCCTAAGAGA CGCGGACGCGGCGGAGGACGCAAGAAGAAGGAGTAG |
| Transcript | >OphauB2|6561 ATGTCGGCAGACGAGTCCAATTCCACGTCGGGCTACGCGCCAAAGTCGCCAGACCTGTCGTCCTTTTACTCGGCC AGCCCCACTTTGCCCGCATCACAACAAGTCGGCCATCCGAGCCTTGAGCAACAGCAGGGAGAAGGCTATAAAGAG CAACGTCTCGCCAATCCATATTCTTCGTCGGCTTTTCCCTCAACCTCGGTTTACACCCCCCCAACCCTCACTTTC CCCACCAGCCACCCTATATTTGTCCCAGAGTGGCGCTGTCATCCACCGCCGTCTGCTTATAGCGCGCAGCAGCAG TACTATCATTCTTCCTCTGCGCTGCCGCCCTTTAATCACCCATCCCGGACGCCATACGGCTACAGGGAACCTCTT GCTGGGCAGCGGCAGGAGCACCAACAGCCGCCGCCGCCTGACCAAGAAGAAATAGCTCATTACAGGCAACAGCCT ATTCAACCGGGCTTGTCCTTAATTCCTGGCGCCTCTGTCACCAGTCCCTCATCCACTGGCAGTGCCGACATGCCA CCACGAAGACGAGCTGCTGCCGCCGCCGCCGCCGCCGTGGCTGCTGAAGCGGCTGCTTCTTCATCATCCCCTCCC CCCTCACCGCCTCTTCCGCCTTCTGCCCCTGCGGTGGAGCCGTCACCTGTCAAGACAAAGTTCCCGACGGCCAGG ATAAAGCGCATCATGCAGGCCGACGAAGAAGTGGGCAAAGTTGCCCAGCAAGCACCAATTGCCGTGGGAAAAGCT CTTGAACTTTTCATGGTCCAGCTCGTCAATAGGGGCGCCGAGGTGGCCAGGAACAAGGGAGCTCGAAAGGTGACG GCCGCAATGCTCAAGCAAGTCATTGAGACGGAGGAGCAATGGGACTTTCTTCGCGAAATCGTCAGCCGCGTCGAT CTCGAAAAGGATGGCTCACGGGCCAAGGCCAAGACGGAGAGCGAGAGCGACGAAGAAGTGGTGGAGCCTAAGAGA CGCGGACGCGGCGGAGGACGCAAGAAGAAGGAGTAG |
| Gene | >OphauB2|6561 ATGTCGGCAGACGAGTCCAATTCCACGTCGGGCTACGCGCCAAAGTCGCCAGACCTGTCGTCCTTTTACTCGGCC AGCCCCACTTTGCCCGCATCACAACAAGTCGGCCATCCGAGCCTTGAGCAACAGCAGGGAGAAGGCTATAAAGAG CAACGTCTCGCCAATCCATATTCTTCGTCGGCTTTTCCCTCAACCTCGGTTTACACCCCCCCAACCCTCACTTTC CCCACCAGCCACCCTATATTTGTCCCAGAGTGGCGCTGTCATCCACCGCCGTCTGCTTATAGCGCGCAGCAGCAG TACTATCATTCTTCCTCTGCGCTGCCGCCCTTTAATCACCCATCCCGGACGCCATACGGCTACAGGGAACCTCTT GCTGGGCAGCGGCAGGAGCACCAACAGCCGCCGCCGCCTGACCAAGAAGAAATAGCTCATTACAGGCAACAGCCT ATTCAACCGGGCTTGTCCTTAATTCCTGGCGCCTCTGTCACCAGTCCCTCATCCACTGGCAGTGCCGACATGCCA CCACGAAGACGAGCTGCTGCCGCCGCCGCCGCCGCCGTGGCTGCTGAAGCGGCTGCTTCTTCATCATCCCCTCCC CCCTCACCGCCTCTTCCGCCTTCTGCCCCTGCGGTGGAGCCGTCACCTGTCAAGACAAAGTTCCCGACGGCCAGG ATAAAGCGCATCATGCAGGCCGACGAAGAAGTGGGCAAAGTTGCCCAGCAAGCACCAATTGCCGTGGGAAAAGCT CTTGAACTTTTCATGGTCCAGCTCGTCAATAGGGGCGCCGAGGTGGCCAGGAACAAGGGAGCTCGAAAGGTGACG GCCGCAATGCTCAAGCAAGTCATTGAGACGGAGGAGCAATGGGACTTTCTTCGCGAAATCGTCAGCCGCGTCGAT CTCGAAAAGGATGGCTCACGGGCCAAGGCCAAGACGGAGAGCGAGAGCGACGAAGAAGTGGTGGAGCCTAAGAGA CGCGGACGCGGCGGAGGACGCAAGAAGAAGGAGTAG |