Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|6513
Gene name
LocationContig_6:226433..229130
Strand-
Gene length (bp)2697
Transcript length (bp)2568
Coding sequence length (bp)2568
Protein length (aa) 856

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00924 MS_channel Mechanosensitive ion channel 2.4E-21 448 595

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O74839|YC1B_SCHPO Uncharacterized MscS family protein C1183.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1183.11 PE=1 SV=1 67 658 1.0E-91
sp|O14050|YEYH_SCHPO Uncharacterized MscS family protein C2C4.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.17c PE=3 SV=1 72 671 2.0E-82
sp|Q9LYG9|MSL10_ARATH Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1 382 653 1.0E-24
sp|Q84M97|MSL9_ARATH Mechanosensitive ion channel protein 9 OS=Arabidopsis thaliana GN=MSL9 PE=1 SV=1 382 653 1.0E-24
sp|Q9LPG3|MSL4_ARATH Mechanosensitive ion channel protein 4 OS=Arabidopsis thaliana GN=MSL4 PE=3 SV=1 128 643 2.0E-20
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O74839|YC1B_SCHPO Uncharacterized MscS family protein C1183.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1183.11 PE=1 SV=1 67 658 1.0E-91
sp|O14050|YEYH_SCHPO Uncharacterized MscS family protein C2C4.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.17c PE=3 SV=1 72 671 2.0E-82
sp|Q9LYG9|MSL10_ARATH Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1 382 653 1.0E-24
sp|Q84M97|MSL9_ARATH Mechanosensitive ion channel protein 9 OS=Arabidopsis thaliana GN=MSL9 PE=1 SV=1 382 653 1.0E-24
sp|Q9LPG3|MSL4_ARATH Mechanosensitive ion channel protein 4 OS=Arabidopsis thaliana GN=MSL4 PE=3 SV=1 128 643 2.0E-20
sp|Q9LH74|MSL5_ARATH Mechanosensitive ion channel protein 5 OS=Arabidopsis thaliana GN=MSL5 PE=2 SV=1 146 674 3.0E-19
sp|F4IME2|MSL8_ARATH Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2 362 640 6.0E-19
sp|F4IME1|MSL7_ARATH Mechanosensitive ion channel protein 7 OS=Arabidopsis thaliana GN=MSL7 PE=3 SV=1 215 640 9.0E-18
sp|Q9SYM1|MSL6_ARATH Mechanosensitive ion channel protein 6 OS=Arabidopsis thaliana GN=MSL6 PE=1 SV=1 366 653 6.0E-14
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GO

GO Term Description Terminal node
GO:0055085 transmembrane transport Yes
GO:0016020 membrane Yes
GO:0110165 cellular anatomical entity No
GO:0009987 cellular process No
GO:0051179 localization No
GO:0008150 biological_process No
GO:0051234 establishment of localization No
GO:0005575 cellular_component No
GO:0006810 transport No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 57 0.45

Transmembrane Domains

Domain # Start End Length
1 85 107 22
2 127 149 22
3 156 173 17
4 183 205 22
5 212 234 22
6 449 466 17
7 471 493 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|6513
MSENGIPLTKVRSNASITGARKPIPGSFESSLGNEKGSLHSRHAGRRRRYGEGLGRTGTGGSDVVSVNAMGRLYA
KIVGFSVVTRYMVYVVPIGLLLAVPLIVLAIFDHKNDVPVGKKKTETDAGTQIIPGPPLFLLFLWFEITWLSLWA
AKIAAWFLPKAFTFFSGIVSMGVRKYATVLSNLTIPLSLFFSALASWLTFKNLFVDAVNNKITWVVTIERILGAL
FVSSAVLLGEKAIVQLIGVTYHQRSFANRIKASKREVHLLGLLYDASRTIFPMYCQEFADEDHIINDSIEIMLGS
KAGRKAAGAATPMKIIGDVGRLGDKVTSAFGNFAQEITGKQVFNPNSAHSIVLEALEKRLSSEALGRRIWMSFVL
EGKEALYLEDFQEVLGPDYKDEAEEAFNAIDNDMNGDISLDEMVRKVVEVGTERKAIGEGMKDIGQALRVFDKVL
LFVVFLIVIFIFLFFFNSNVLTTVASAGTALLSLSFVFAVTTQEFLGSCIFLFVKHPYDVGDRVDISDTKMVVDR
ISLLYTVFTRIDYMQVVQVPNIQLNTLWIENVSRSKAMVETIELDVSYDTTFEDIELLRSEMESFVRAPENSRDF
QPDFNISVGGVGDLDKMTLYISIKHKSNWHNEKVRSKRRSKFMCALALALKKIPMYGPGGGSEALGGPTNPTYSV
AVSNDFASSARDDASKKKDAARMVPTKDNQTEEEIRQAEKQAIADLVARPTAVETEPLWGGHDAEGQSGPQRSAS
VDTRRSHEMELRSQLLKRSSTRGRRKAGETLQHHATHESSAGASSAYAQRLETFDEEAQTDMPSSYYGVHHVGEE
EVQGLHANASRRDHRRGHSLSSRGVSPDLR*
Coding >OphauB2|6513
ATGTCTGAAAACGGCATTCCTCTGACAAAGGTCAGGAGCAACGCTTCCATTACTGGCGCGCGCAAGCCTATTCCT
GGCAGCTTTGAGTCGTCGCTCGGCAATGAAAAGGGCAGTCTGCACAGTCGCCATGCCGGCCGACGGAGAAGGTAT
GGCGAAGGCCTTGGCCGCACCGGCACTGGTGGCTCCGATGTTGTCAGCGTCAACGCCATGGGCCGCCTGTATGCC
AAGATTGTTGGCTTCTCCGTCGTTACGCGATACATGGTTTATGTTGTTCCCATTGGCCTCTTGCTGGCTGTGCCG
CTCATTGTCCTGGCCATTTTTGACCACAAGAATGATGTCCCCGTTGGCAAGAAGAAGACGGAGACGGATGCTGGA
ACCCAGATTATCCCAGGCCCGCCGCTCTTCTTGCTCTTTTTGTGGTTTGAAATCACTTGGCTCTCTCTGTGGGCT
GCCAAAATCGCCGCCTGGTTCCTGCCAAAGGCCTTTACCTTTTTCAGCGGCATCGTGAGCATGGGCGTTCGCAAA
TATGCCACGGTTCTCAGCAACCTAACCATTCCCCTCTCACTCTTCTTTTCTGCCTTGGCTTCGTGGCTCACGTTT
AAGAACCTCTTTGTCGACGCCGTCAACAACAAAATCACCTGGGTCGTTACCATTGAGCGCATTCTCGGAGCCCTC
TTCGTCTCGTCGGCTGTTTTGCTGGGCGAAAAGGCCATTGTCCAGTTGATTGGCGTCACATATCATCAGCGCTCC
TTTGCCAACCGCATCAAGGCCTCAAAGCGCGAAGTTCACCTGCTTGGCCTCTTGTACGACGCTTCCCGAACCATT
TTCCCCATGTACTGTCAAGAATTTGCCGACGAGGACCACATCATCAATGACAGCATCGAGATTATGCTGGGGAGC
AAGGCTGGACGCAAGGCTGCTGGTGCAGCTACTCCAATGAAGATTATTGGTGATGTTGGTCGCTTGGGAGACAAG
GTTACCTCTGCATTTGGCAACTTTGCCCAAGAAATCACGGGCAAACAAGTCTTCAACCCCAATTCGGCTCACTCG
ATTGTCCTGGAGGCCTTGGAGAAGCGATTGTCGTCGGAGGCTCTGGGCAGGCGCATTTGGATGTCGTTTGTGCTT
GAGGGCAAGGAGGCGCTCTACCTGGAAGATTTTCAAGAGGTGCTTGGCCCCGACTACAAGGACGAAGCTGAGGAA
GCCTTCAACGCCATTGACAACGACATGAATGGTGACATTAGTCTGGATGAAATGGTGCGCAAAGTGGTGGAAGTT
GGCACTGAGCGCAAGGCTATTGGTGAGGGAATGAAGGACATTGGCCAGGCCTTGCGGGTCTTTGACAAGGTTTTG
CTCTTTGTTGTCTTTCTAATTGTCATCTTCATCTTTCTCTTCTTCTTCAACAGCAATGTTCTTACTACCGTGGCC
AGCGCCGGCACGGCTCTCTTGTCTCTGTCCTTTGTCTTTGCTGTGACGACGCAAGAGTTTCTCGGTTCTTGCATT
TTCTTGTTTGTCAAGCATCCCTATGACGTTGGAGACCGAGTCGATATTAGCGATACCAAGATGGTGGTGGACAGA
ATATCTTTGCTCTACACAGTATTTACTCGCATAGACTATATGCAGGTGGTTCAGGTGCCCAATATTCAGCTCAAT
ACGCTGTGGATCGAAAATGTCTCTCGCAGCAAGGCCATGGTGGAGACGATTGAGCTCGACGTTTCCTATGATACC
ACTTTTGAAGACATTGAACTGCTTCGCAGCGAAATGGAGAGCTTTGTCCGCGCACCAGAAAATTCGCGCGACTTC
CAGCCCGACTTCAACATTAGCGTGGGCGGCGTGGGCGATCTCGACAAGATGACGCTGTACATTAGCATCAAGCAC
AAGTCGAATTGGCACAATGAAAAGGTGCGGTCCAAGCGCAGGTCTAAGTTTATGTGCGCTCTGGCTCTCGCGCTC
AAGAAGATTCCCATGTACGGCCCGGGCGGCGGCAGCGAAGCTCTTGGCGGGCCAACGAACCCTACATACTCTGTG
GCCGTTTCCAATGACTTTGCTTCTTCGGCTCGCGACGATGCCTCCAAGAAGAAGGATGCGGCCCGCATGGTGCCC
ACCAAGGACAACCAAACAGAAGAAGAGATTCGTCAAGCCGAAAAGCAAGCCATTGCTGACTTGGTTGCACGTCCG
ACTGCTGTTGAAACGGAGCCGCTCTGGGGCGGACATGATGCTGAAGGCCAGAGCGGTCCCCAGCGCTCAGCGTCG
GTTGACACGCGCCGGTCGCACGAGATGGAACTGCGCTCGCAGCTTCTCAAGCGTTCGAGCACGCGAGGCCGAAGG
AAGGCTGGAGAGACCCTGCAGCATCATGCGACCCACGAAAGCAGCGCAGGAGCCAGCTCGGCATATGCGCAGAGA
CTGGAGACGTTTGACGAGGAGGCACAGACGGATATGCCGTCGTCATACTATGGCGTGCATCATGTTGGCGAGGAA
GAGGTGCAAGGCCTACATGCCAATGCATCGCGGCGCGATCACCGTCGTGGGCATAGCTTGTCTTCAAGGGGAGTG
TCGCCAGACTTGCGCTAA
Transcript >OphauB2|6513
ATGTCTGAAAACGGCATTCCTCTGACAAAGGTCAGGAGCAACGCTTCCATTACTGGCGCGCGCAAGCCTATTCCT
GGCAGCTTTGAGTCGTCGCTCGGCAATGAAAAGGGCAGTCTGCACAGTCGCCATGCCGGCCGACGGAGAAGGTAT
GGCGAAGGCCTTGGCCGCACCGGCACTGGTGGCTCCGATGTTGTCAGCGTCAACGCCATGGGCCGCCTGTATGCC
AAGATTGTTGGCTTCTCCGTCGTTACGCGATACATGGTTTATGTTGTTCCCATTGGCCTCTTGCTGGCTGTGCCG
CTCATTGTCCTGGCCATTTTTGACCACAAGAATGATGTCCCCGTTGGCAAGAAGAAGACGGAGACGGATGCTGGA
ACCCAGATTATCCCAGGCCCGCCGCTCTTCTTGCTCTTTTTGTGGTTTGAAATCACTTGGCTCTCTCTGTGGGCT
GCCAAAATCGCCGCCTGGTTCCTGCCAAAGGCCTTTACCTTTTTCAGCGGCATCGTGAGCATGGGCGTTCGCAAA
TATGCCACGGTTCTCAGCAACCTAACCATTCCCCTCTCACTCTTCTTTTCTGCCTTGGCTTCGTGGCTCACGTTT
AAGAACCTCTTTGTCGACGCCGTCAACAACAAAATCACCTGGGTCGTTACCATTGAGCGCATTCTCGGAGCCCTC
TTCGTCTCGTCGGCTGTTTTGCTGGGCGAAAAGGCCATTGTCCAGTTGATTGGCGTCACATATCATCAGCGCTCC
TTTGCCAACCGCATCAAGGCCTCAAAGCGCGAAGTTCACCTGCTTGGCCTCTTGTACGACGCTTCCCGAACCATT
TTCCCCATGTACTGTCAAGAATTTGCCGACGAGGACCACATCATCAATGACAGCATCGAGATTATGCTGGGGAGC
AAGGCTGGACGCAAGGCTGCTGGTGCAGCTACTCCAATGAAGATTATTGGTGATGTTGGTCGCTTGGGAGACAAG
GTTACCTCTGCATTTGGCAACTTTGCCCAAGAAATCACGGGCAAACAAGTCTTCAACCCCAATTCGGCTCACTCG
ATTGTCCTGGAGGCCTTGGAGAAGCGATTGTCGTCGGAGGCTCTGGGCAGGCGCATTTGGATGTCGTTTGTGCTT
GAGGGCAAGGAGGCGCTCTACCTGGAAGATTTTCAAGAGGTGCTTGGCCCCGACTACAAGGACGAAGCTGAGGAA
GCCTTCAACGCCATTGACAACGACATGAATGGTGACATTAGTCTGGATGAAATGGTGCGCAAAGTGGTGGAAGTT
GGCACTGAGCGCAAGGCTATTGGTGAGGGAATGAAGGACATTGGCCAGGCCTTGCGGGTCTTTGACAAGGTTTTG
CTCTTTGTTGTCTTTCTAATTGTCATCTTCATCTTTCTCTTCTTCTTCAACAGCAATGTTCTTACTACCGTGGCC
AGCGCCGGCACGGCTCTCTTGTCTCTGTCCTTTGTCTTTGCTGTGACGACGCAAGAGTTTCTCGGTTCTTGCATT
TTCTTGTTTGTCAAGCATCCCTATGACGTTGGAGACCGAGTCGATATTAGCGATACCAAGATGGTGGTGGACAGA
ATATCTTTGCTCTACACAGTATTTACTCGCATAGACTATATGCAGGTGGTTCAGGTGCCCAATATTCAGCTCAAT
ACGCTGTGGATCGAAAATGTCTCTCGCAGCAAGGCCATGGTGGAGACGATTGAGCTCGACGTTTCCTATGATACC
ACTTTTGAAGACATTGAACTGCTTCGCAGCGAAATGGAGAGCTTTGTCCGCGCACCAGAAAATTCGCGCGACTTC
CAGCCCGACTTCAACATTAGCGTGGGCGGCGTGGGCGATCTCGACAAGATGACGCTGTACATTAGCATCAAGCAC
AAGTCGAATTGGCACAATGAAAAGGTGCGGTCCAAGCGCAGGTCTAAGTTTATGTGCGCTCTGGCTCTCGCGCTC
AAGAAGATTCCCATGTACGGCCCGGGCGGCGGCAGCGAAGCTCTTGGCGGGCCAACGAACCCTACATACTCTGTG
GCCGTTTCCAATGACTTTGCTTCTTCGGCTCGCGACGATGCCTCCAAGAAGAAGGATGCGGCCCGCATGGTGCCC
ACCAAGGACAACCAAACAGAAGAAGAGATTCGTCAAGCCGAAAAGCAAGCCATTGCTGACTTGGTTGCACGTCCG
ACTGCTGTTGAAACGGAGCCGCTCTGGGGCGGACATGATGCTGAAGGCCAGAGCGGTCCCCAGCGCTCAGCGTCG
GTTGACACGCGCCGGTCGCACGAGATGGAACTGCGCTCGCAGCTTCTCAAGCGTTCGAGCACGCGAGGCCGAAGG
AAGGCTGGAGAGACCCTGCAGCATCATGCGACCCACGAAAGCAGCGCAGGAGCCAGCTCGGCATATGCGCAGAGA
CTGGAGACGTTTGACGAGGAGGCACAGACGGATATGCCGTCGTCATACTATGGCGTGCATCATGTTGGCGAGGAA
GAGGTGCAAGGCCTACATGCCAATGCATCGCGGCGCGATCACCGTCGTGGGCATAGCTTGTCTTCAAGGGGAGTG
TCGCCAGACTTGCGCTAA
Gene >OphauB2|6513
ATGTCTGAAAACGGCATTCCTCTGACAAAGGTCAGGAGCAACGCTTCCATTACTGGCGCGCGCAAGCCTATTCCT
GGCAGCTTTGAGTCGTCGCTCGGCAATGAAAAGGGCAGTCTGCACAGTCGCCATGCCGGCCGACGGAGAAGGTAT
GGCGAAGGCCTTGGCCGCACCGGCACTGGTGGCTCCGATGTTGTCAGCGTCAACGCCATGGGCCGCCTGTATGCC
AAGATTGTTGGCTTCTCCGTCGTTACGCGATACATGGTTTATGTTGTTCCCATTGGCCTCTTGCTGGCTGTGCCG
CTCATTGTCCTGGCCATTTTTGACCACAAGAATGATGTCCCCGTTGGCAAGAAGAAGACGGAGACGGATGCTGGA
ACCCAGATTATCCCAGGCCCGCCGCTCTTCTTGCTCTTTTTGTGGTTTGAAATCACTTGGCTCTCTCTGTGGGCT
GCCAAAATCGCCGCCTGGTTCCTGCCAAAGGCCTTTACCTTTTTCAGCGGCATCGTGAGCATGGGCGTTCGCAAA
TATGCCACGGTTCTCAGCAACCTAACCATTCCCCTCTCACTCTTCTTTTCTGCCTTGGCTTCGTGGCTCACGTTT
AAGAACCTCTTTGTCGACGCCGTCAACAACAAAATCACCTGGGTCGTTACCATTGAGCGCATTCTCGGAGCCCTC
TTCGTCTCGTCGGCTGTTTTGCTGGGCGAAAAGGCCATTGTCCAGTTGATTGGCGTCACATATCATCAGCGCTCC
TTTGCCAACCGCATCAAGGCCTCAAAGCGCGAAGTTCACCTGCTTGGCCTCTTGTACGACGCTTCCCGAACCATT
TTCCCCATGTACTGTCAAGAATTTGCCGACGAGGACCACATCATCAATGACAGCATCGAGATTATGCTGGGGAGC
AAGGCTGGACGCAAGGCTGCTGGTGCAGCTACTCCAATGAAGATTATTGGTGATGTTGGTCGCTTGGGAGACAAG
GTTACCTCTGCATTTGGCAACTTTGCCCAAGAAATCACGGGCAAACAAGTCTTCAACCCCAATTCGGCTCACTCG
ATTGTCCTGGAGGCCTTGGAGAAGCGATTGTCGTCGGAGGCTCTGGGCAGGCGCATTTGGATGTCGTTTGTGCTT
GAGGGCAAGGAGGCGCTCTACCTGGAAGATTTTCAAGAGGTGCTTGGCCCCGACTACAAGGACGAAGCTGAGGAA
GCCTTCAACGCCATTGACAACGACATGAATGGTGACATTAGTCTGGATGAAATGGTGCGCAAAGTGGTGGAAGTT
GGCACTGAGCGCAAGGCTATTGGTGAGGGAATGAAGGACATTGGCCAGGCCTTGCGGGTCTTTGACAAGGTTTTG
CTCTTTGTTGTCTTTCTAATTGTCATCTTCATCTTTCGTAAGTCGTGTCATGCGGTTTTGGCCTTGAAGCTGATG
ATGCAAGTGCTAACGACTATTGGACAGTCTTCTTCTTCAACAGCAATGTTCTTACTACCGTGGCCAGCGCCGGCA
CGGCTCTCTTGTCTCTGTCCTTTGTCTTTGCTGTGACGACGCAAGAGTTTCTCGGTTCTTGCATTTTCTTGTTTG
TCAAGCATCCCTATGACGTTGGAGACCGAGTCGATATTAGCGATACCAAGATGGTGGTGGACAGAATATCTTTGC
TCTACACAGTATTTACTCGCATAGACTATATGCAGGTGGTTCAGGTAAGCTTTTTTGCATGCCCAAGCAAGCGCC
TTGAATGCGCCTCGGCTGACAGACTTGGCACAGGTGCCCAATATTCAGCTCAATACGCTGTGGATCGAAAATGTC
TCTCGCAGCAAGGCCATGGTGGAGACGATTGAGCTCGACGTTTCCTATGATACCACTTTTGAAGACATTGAACTG
CTTCGCAGCGAAATGGAGAGCTTTGTCCGCGCACCAGAAAATTCGCGCGACTTCCAGCCCGACTTCAACATTAGC
GTGGGCGGCGTGGGCGATCTCGACAAGATGACGCTGTACATTAGCATCAAGCACAAGTCGAATTGGCACAATGAA
AAGGTGCGGTCCAAGCGCAGGTCTAAGTTTATGTGCGCTCTGGCTCTCGCGCTCAAGAAGATTCCCATGTACGGC
CCGGGCGGCGGCAGCGAAGCTCTTGGCGGGCCAACGAACCCTACATACTCTGTGGCCGTTTCCAATGACTTTGCT
TCTTCGGCTCGCGACGATGCCTCCAAGAAGAAGGATGCGGCCCGCATGGTGCCCACCAAGGACAACCAAACAGAA
GAAGAGATTCGTCAAGCCGAAAAGCAAGCCATTGCTGACTTGGTTGCACGTCCGACTGCTGTTGAAACGGAGCCG
CTCTGGGGCGGACATGATGCTGAAGGCCAGAGCGGTCCCCAGCGCTCAGCGTCGGTTGACACGCGCCGGTCGCAC
GAGATGGAACTGCGCTCGCAGCTTCTCAAGCGTTCGAGCACGCGAGGCCGAAGGAAGGCTGGAGAGACCCTGCAG
CATCATGCGACCCACGAAAGCAGCGCAGGAGCCAGCTCGGCATATGCGCAGAGACTGGAGACGTTTGACGAGGAG
GCACAGACGGATATGCCGTCGTCATACTATGGCGTGCATCATGTTGGCGAGGAAGAGGTGCAAGGCCTACATGCC
AATGCATCGCGGCGCGATCACCGTCGTGGGCATAGCTTGTCTTCAAGGGGAGTGTCGCCAGACTTGCGCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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