© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauB2|6465 |
| Gene name | |
| Location | Contig_6:77916..79173 |
| Strand | + |
| Gene length (bp) | 1257 |
| Transcript length (bp) | 1257 |
| Coding sequence length (bp) | 1257 |
| Protein length (aa) | 419 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06027 | SLC35F | Solute carrier family 35 | 7.9E-94 | 70 | 367 |
| PF08627 | CRT-like | CRT-like, chloroquine-resistance transporter-like | 9.8E-08 | 137 | 306 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59785|YCN8_SCHPO | Uncharacterized solute carrier family 35 member C320.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC320.08 PE=1 SV=1 | 67 | 397 | 3.0E-97 |
| sp|Q5T1Q4|S35F1_HUMAN | Solute carrier family 35 member F1 OS=Homo sapiens GN=SLC35F1 PE=2 SV=2 | 68 | 366 | 3.0E-55 |
| sp|Q8BGK5|S35F1_MOUSE | Solute carrier family 35 member F1 OS=Mus musculus GN=Slc35f1 PE=1 SV=1 | 68 | 366 | 2.0E-54 |
| sp|Q8IXU6|S35F2_HUMAN | Solute carrier family 35 member F2 OS=Homo sapiens GN=SLC35F2 PE=1 SV=1 | 68 | 366 | 4.0E-52 |
| sp|Q7TML3|S35F2_MOUSE | Solute carrier family 35 member F2 OS=Mus musculus GN=Slc35f2 PE=1 SV=2 | 54 | 366 | 5.0E-52 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59785|YCN8_SCHPO | Uncharacterized solute carrier family 35 member C320.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC320.08 PE=1 SV=1 | 67 | 397 | 3.0E-97 |
| sp|Q5T1Q4|S35F1_HUMAN | Solute carrier family 35 member F1 OS=Homo sapiens GN=SLC35F1 PE=2 SV=2 | 68 | 366 | 3.0E-55 |
| sp|Q8BGK5|S35F1_MOUSE | Solute carrier family 35 member F1 OS=Mus musculus GN=Slc35f1 PE=1 SV=1 | 68 | 366 | 2.0E-54 |
| sp|Q8IXU6|S35F2_HUMAN | Solute carrier family 35 member F2 OS=Homo sapiens GN=SLC35F2 PE=1 SV=1 | 68 | 366 | 4.0E-52 |
| sp|Q7TML3|S35F2_MOUSE | Solute carrier family 35 member F2 OS=Mus musculus GN=Slc35f2 PE=1 SV=2 | 54 | 366 | 5.0E-52 |
| sp|Q0V9U2|S35F2_XENTR | Solute carrier family 35 member F2 OS=Xenopus tropicalis GN=slc35f2 PE=2 SV=2 | 41 | 367 | 7.0E-48 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0005575 | cellular_component | No |
| GO:0006810 | transport | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 72 | 94 | 22 |
| 2 | 104 | 126 | 22 |
| 3 | 145 | 167 | 22 |
| 4 | 172 | 191 | 19 |
| 5 | 198 | 217 | 19 |
| 6 | 232 | 254 | 22 |
| 7 | 261 | 280 | 19 |
| 8 | 295 | 317 | 22 |
| 9 | 324 | 346 | 22 |
| 10 | 351 | 373 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5927 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|6465 MTIEHQNNDHKGGFDQSLTASRSEASAVARSSTRASDDATQQWPDDALDASRGLDMLESRSSHWYSYLVTRNFWI LLLIGQVLALCITATNTFTSFLAEAHFDAPAFQSLLNYALLAVLFNTLFLVRDGPRAWYKAARTDGWRYLIMAFL DVEGNYFTVLAYQYTNILSAQLLNFWSIVVVVTTSFFLLRVRYRWCQVVGILVACAGMGILLASDHIQNRNGGPA ANALKGDLFGLLGASLYGASNVLEEYLVSRKPMHHVLAFISLLGVIISAVHAAIFDRHALAHAPWSQSSVPAYLV GYTLCLSLFYTLAPLILRMGSAAFFDISLLTANFWGVIIGVRVFGYAIHFLYPIAFVCIVSGLVVYFLSGSVLGD SRKPWLGQNQEAGVAGIGTAKRRAIRIARAAPAEPEHGVQPST* |
| Coding | >OphauB2|6465 ATGACTATCGAGCATCAAAATAATGACCACAAGGGCGGCTTCGACCAATCCCTCACTGCCAGCCGCTCCGAAGCC TCGGCCGTGGCGCGCTCCAGCACTCGAGCCAGCGACGATGCGACGCAGCAATGGCCCGACGATGCCCTCGACGCT AGCCGCGGCCTCGACATGCTCGAGTCGCGCTCTTCACACTGGTATAGCTACCTGGTGACGCGCAACTTTTGGATT CTTCTTCTCATTGGCCAGGTGCTCGCCTTGTGCATCACGGCCACGAATACCTTTACCTCGTTCCTCGCAGAGGCT CATTTTGACGCTCCGGCCTTTCAGTCCCTGCTCAACTATGCGCTGCTCGCTGTCCTCTTCAACACGCTCTTCCTC GTCCGCGACGGCCCCAGAGCTTGGTACAAGGCGGCACGCACAGATGGCTGGCGTTATCTCATCATGGCCTTTCTC GACGTCGAGGGCAACTACTTCACCGTCCTTGCATACCAATACACAAATATCTTGTCGGCACAGCTCCTCAACTTT TGGTCCATTGTCGTTGTCGTCACCACATCCTTCTTCCTCTTGCGCGTGAGATACCGCTGGTGTCAGGTTGTTGGC ATTCTTGTCGCCTGCGCTGGAATGGGCATTCTTCTCGCCTCGGACCACATCCAGAATCGAAACGGCGGCCCCGCC GCAAATGCCCTCAAGGGTGATCTCTTTGGCCTCTTGGGCGCCAGTCTTTACGGCGCCTCCAACGTCTTGGAAGAG TATCTAGTGTCTCGCAAGCCAATGCATCACGTTCTTGCCTTTATTTCTCTTCTCGGTGTCATCATCTCGGCCGTC CACGCCGCAATCTTTGACCGCCACGCTCTCGCTCATGCCCCGTGGTCCCAGTCCTCGGTCCCAGCCTATCTGGTT GGCTACACCCTCTGTCTCTCCCTTTTTTATACCCTGGCACCCCTCATCCTCCGCATGGGCTCCGCCGCCTTTTTC GACATTTCGTTGCTCACAGCCAACTTTTGGGGCGTCATTATAGGCGTCCGCGTTTTTGGATATGCTATCCACTTT TTATACCCCATTGCATTTGTCTGCATCGTCTCTGGGCTTGTTGTCTATTTTCTCTCTGGTTCTGTGCTTGGCGAC TCGCGCAAGCCCTGGCTGGGTCAAAATCAAGAAGCTGGAGTCGCAGGCATTGGCACTGCCAAGCGCCGTGCTATC CGCATAGCTCGCGCCGCCCCAGCTGAGCCTGAACACGGCGTTCAACCGTCGACTTAG |
| Transcript | >OphauB2|6465 ATGACTATCGAGCATCAAAATAATGACCACAAGGGCGGCTTCGACCAATCCCTCACTGCCAGCCGCTCCGAAGCC TCGGCCGTGGCGCGCTCCAGCACTCGAGCCAGCGACGATGCGACGCAGCAATGGCCCGACGATGCCCTCGACGCT AGCCGCGGCCTCGACATGCTCGAGTCGCGCTCTTCACACTGGTATAGCTACCTGGTGACGCGCAACTTTTGGATT CTTCTTCTCATTGGCCAGGTGCTCGCCTTGTGCATCACGGCCACGAATACCTTTACCTCGTTCCTCGCAGAGGCT CATTTTGACGCTCCGGCCTTTCAGTCCCTGCTCAACTATGCGCTGCTCGCTGTCCTCTTCAACACGCTCTTCCTC GTCCGCGACGGCCCCAGAGCTTGGTACAAGGCGGCACGCACAGATGGCTGGCGTTATCTCATCATGGCCTTTCTC GACGTCGAGGGCAACTACTTCACCGTCCTTGCATACCAATACACAAATATCTTGTCGGCACAGCTCCTCAACTTT TGGTCCATTGTCGTTGTCGTCACCACATCCTTCTTCCTCTTGCGCGTGAGATACCGCTGGTGTCAGGTTGTTGGC ATTCTTGTCGCCTGCGCTGGAATGGGCATTCTTCTCGCCTCGGACCACATCCAGAATCGAAACGGCGGCCCCGCC GCAAATGCCCTCAAGGGTGATCTCTTTGGCCTCTTGGGCGCCAGTCTTTACGGCGCCTCCAACGTCTTGGAAGAG TATCTAGTGTCTCGCAAGCCAATGCATCACGTTCTTGCCTTTATTTCTCTTCTCGGTGTCATCATCTCGGCCGTC CACGCCGCAATCTTTGACCGCCACGCTCTCGCTCATGCCCCGTGGTCCCAGTCCTCGGTCCCAGCCTATCTGGTT GGCTACACCCTCTGTCTCTCCCTTTTTTATACCCTGGCACCCCTCATCCTCCGCATGGGCTCCGCCGCCTTTTTC GACATTTCGTTGCTCACAGCCAACTTTTGGGGCGTCATTATAGGCGTCCGCGTTTTTGGATATGCTATCCACTTT TTATACCCCATTGCATTTGTCTGCATCGTCTCTGGGCTTGTTGTCTATTTTCTCTCTGGTTCTGTGCTTGGCGAC TCGCGCAAGCCCTGGCTGGGTCAAAATCAAGAAGCTGGAGTCGCAGGCATTGGCACTGCCAAGCGCCGTGCTATC CGCATAGCTCGCGCCGCCCCAGCTGAGCCTGAACACGGCGTTCAACCGTCGACTTAG |
| Gene | >OphauB2|6465 ATGACTATCGAGCATCAAAATAATGACCACAAGGGCGGCTTCGACCAATCCCTCACTGCCAGCCGCTCCGAAGCC TCGGCCGTGGCGCGCTCCAGCACTCGAGCCAGCGACGATGCGACGCAGCAATGGCCCGACGATGCCCTCGACGCT AGCCGCGGCCTCGACATGCTCGAGTCGCGCTCTTCACACTGGTATAGCTACCTGGTGACGCGCAACTTTTGGATT CTTCTTCTCATTGGCCAGGTGCTCGCCTTGTGCATCACGGCCACGAATACCTTTACCTCGTTCCTCGCAGAGGCT CATTTTGACGCTCCGGCCTTTCAGTCCCTGCTCAACTATGCGCTGCTCGCTGTCCTCTTCAACACGCTCTTCCTC GTCCGCGACGGCCCCAGAGCTTGGTACAAGGCGGCACGCACAGATGGCTGGCGTTATCTCATCATGGCCTTTCTC GACGTCGAGGGCAACTACTTCACCGTCCTTGCATACCAATACACAAATATCTTGTCGGCACAGCTCCTCAACTTT TGGTCCATTGTCGTTGTCGTCACCACATCCTTCTTCCTCTTGCGCGTGAGATACCGCTGGTGTCAGGTTGTTGGC ATTCTTGTCGCCTGCGCTGGAATGGGCATTCTTCTCGCCTCGGACCACATCCAGAATCGAAACGGCGGCCCCGCC GCAAATGCCCTCAAGGGTGATCTCTTTGGCCTCTTGGGCGCCAGTCTTTACGGCGCCTCCAACGTCTTGGAAGAG TATCTAGTGTCTCGCAAGCCAATGCATCACGTTCTTGCCTTTATTTCTCTTCTCGGTGTCATCATCTCGGCCGTC CACGCCGCAATCTTTGACCGCCACGCTCTCGCTCATGCCCCGTGGTCCCAGTCCTCGGTCCCAGCCTATCTGGTT GGCTACACCCTCTGTCTCTCCCTTTTTTATACCCTGGCACCCCTCATCCTCCGCATGGGCTCCGCCGCCTTTTTC GACATTTCGTTGCTCACAGCCAACTTTTGGGGCGTCATTATAGGCGTCCGCGTTTTTGGATATGCTATCCACTTT TTATACCCCATTGCATTTGTCTGCATCGTCTCTGGGCTTGTTGTCTATTTTCTCTCTGGTTCTGTGCTTGGCGAC TCGCGCAAGCCCTGGCTGGGTCAAAATCAAGAAGCTGGAGTCGCAGGCATTGGCACTGCCAAGCGCCGTGCTATC CGCATAGCTCGCGCCGCCCCAGCTGAGCCTGAACACGGCGTTCAACCGTCGACTTAG |