© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauB2|6341 |
| Gene name | |
| Location | Contig_571:479..994 |
| Strand | - |
| Gene length (bp) | 515 |
| Transcript length (bp) | 399 |
| Coding sequence length (bp) | 399 |
| Protein length (aa) | 133 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01694 | Rhomboid | Rhomboid family | 7.4E-07 | 58 | 108 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4I4A4|RBD2_GIBZE | Rhomboid protein 2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RBD2 PE=3 SV=1 | 2 | 131 | 2.0E-39 |
| sp|Q874X5|RBD2_PODAS | Rhomboid protein 2 OS=Podospora anserina GN=RBD2 PE=3 SV=1 | 2 | 131 | 9.0E-38 |
| sp|Q7S4V5|RBD2_NEUCR | Rhomboid protein 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rbd-2 PE=3 SV=1 | 15 | 131 | 1.0E-33 |
| sp|Q4WLP9|RBD2_ASPFU | Rhomboid protein 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rbd2 PE=3 SV=1 | 15 | 131 | 2.0E-30 |
| sp|Q9P375|YLM6_SCHPO | Uncharacterized rhomboid protein C19B12.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC19B12.06c PE=3 SV=2 | 14 | 116 | 3.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0008236 | serine-type peptidase activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0017171 | serine hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| GO:0008233 | peptidase activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0004175 | endopeptidase activity | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 40 | 19 |
| 2 | 95 | 117 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 6673 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|6341 MPGIRDLNASSFWIFIQRLPLVTRIIILLITLCWMVGLYWQKLSDWGSLVPSKVFLTSAYRLSTFPLIHKNLTHA VVNVLALTPLMERFENEYGSLSTLALFFGPLTSLPALLYVLLEGTILRGNKPVMGAR* |
| Coding | >OphauB2|6341 ATGCCTGGCATTCGAGACCTTAACGCTTCTAGTTTCTGGATTTTCATTCAGCGGCTACCACTCGTTACTCGAATC ATAATATTACTGATTACTCTTTGCTGGATGGTTGGCCTCTACTGGCAAAAACTAAGCGACTGGGGGTCTTTGGTT CCGAGCAAAGTATTCTTAACATCAGCATATCGATTATCGACATTTCCTCTAATCCATAAAAACCTAACCCACGCT GTGGTCAACGTGCTTGCCTTAACGCCCTTAATGGAAAGATTTGAGAATGAATACGGGTCATTATCTACACTCGCG TTGTTCTTTGGACCTCTAACATCACTTCCAGCTCTCTTATATGTCTTACTTGAAGGAACAATTTTGCGAGGAAAT AAACCAGTCATGGGAGCAAGGTGA |
| Transcript | >OphauB2|6341 ATGCCTGGCATTCGAGACCTTAACGCTTCTAGTTTCTGGATTTTCATTCAGCGGCTACCACTCGTTACTCGAATC ATAATATTACTGATTACTCTTTGCTGGATGGTTGGCCTCTACTGGCAAAAACTAAGCGACTGGGGGTCTTTGGTT CCGAGCAAAGTATTCTTAACATCAGCATATCGATTATCGACATTTCCTCTAATCCATAAAAACCTAACCCACGCT GTGGTCAACGTGCTTGCCTTAACGCCCTTAATGGAAAGATTTGAGAATGAATACGGGTCATTATCTACACTCGCG TTGTTCTTTGGACCTCTAACATCACTTCCAGCTCTCTTATATGTCTTACTTGAAGGAACAATTTTGCGAGGAAAT AAACCAGTCATGGGAGCAAGGTGA |
| Gene | >OphauB2|6341 ATGCCTGGCATTCGAGACCTTAACGCTTCTAGTTTCTGGATTTTCATTCAGCGGCTACCACTCGTTACTCGAATC ATAATATTACTGATTACTCTTTGCTGGATGGTTGGCCTCTACTGGCAAAAACTAAGCGACTGGGGGTCTTTGGTT CCGAGCAAAGTATTCTTAACATCAGGTCAGTGCTTTTCAAGCGTTTTGCTTCAGGCACGTCCTAATTATATTGGC TTTAGCATATCGATTATCGACATTTCCTCTAATCCATAAAAACCTAACCCACGCTGTGGTCAACGTGCTTGCCTT AACGCCCTTAATGGAAAGATTTGAGAATGAATACGGGTCATTATCTACACTCGCGTTGTTCTTTGGACGTATGAG AATGCTTTGCTTGACTGCTAAGATTTATAGTCAACTAATAATATTTGGCACCAGCTCTAACATCACTTCCAGCTC TCTTATATGTCTTACTTGAAGGAACAATTTTGCGAGGAAATAAACCAGTCATGGGAGCAAGGTGA |