Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|6312
Gene name
LocationContig_57:32644..33418
Strand+
Gene length (bp)774
Transcript length (bp)774
Coding sequence length (bp)774
Protein length (aa) 258

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01988 VIT1 VIT family 1.9E-52 20 250

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q6MWE5|VIT11_ORYSJ Vacuolar iron transporter 1.1 OS=Oryza sativa subsp. japonica GN=VIT1.1 PE=2 SV=1 18 250 1.0E-31
sp|Q9ZUA5|VIT1_ARATH Vacuolar iron transporter 1 OS=Arabidopsis thaliana GN=VIT1 PE=2 SV=1 20 253 3.0E-31
sp|Q6ERE5|VIT12_ORYSJ Vacuolar iron transporter 1.2 OS=Oryza sativa subsp. japonica GN=VIT1.2 PE=3 SV=2 18 250 7.0E-30
sp|P47818|CCC1_YEAST Protein CCC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCC1 PE=1 SV=1 20 223 1.0E-25

GO

GO Term Description Terminal node
GO:0030026 cellular manganese ion homeostasis Yes
GO:0005384 manganese ion transmembrane transporter activity Yes
GO:0022890 inorganic cation transmembrane transporter activity No
GO:0042592 homeostatic process No
GO:0030003 cellular cation homeostasis No
GO:0008324 cation transmembrane transporter activity No
GO:0055076 transition metal ion homeostasis No
GO:0008150 biological_process No
GO:0055080 cation homeostasis No
GO:0003674 molecular_function No
GO:0019725 cellular homeostasis No
GO:0055065 metal ion homeostasis No
GO:0046915 transition metal ion transmembrane transporter activity No
GO:0015075 ion transmembrane transporter activity No
GO:0006875 cellular metal ion homeostasis No
GO:0065008 regulation of biological quality No
GO:0015318 inorganic molecular entity transmembrane transporter activity No
GO:0098771 inorganic ion homeostasis No
GO:0046916 cellular transition metal ion homeostasis No
GO:0065007 biological regulation No
GO:0048878 chemical homeostasis No
GO:0022857 transmembrane transporter activity No
GO:0005215 transporter activity No
GO:0006873 cellular ion homeostasis No
GO:0009987 cellular process No
GO:0046873 metal ion transmembrane transporter activity No
GO:0055071 manganese ion homeostasis No
GO:0055082 cellular chemical homeostasis No
GO:0050801 ion homeostasis No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 39 0.5

Transmembrane Domains

Domain # Start End Length
1 49 71 22
2 166 188 22
3 198 220 22
4 227 249 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|6312
MSETTPLVPQQARPCISDSLRDVIIGFSDGLTVPFALTAGLSSLNSSRLVIMAGLAELFSGMISMGLGAYLAAAT
ERASQRSRKPAPQTNLVAAITARYPSISPSIAQLFVDEVVAASTSPCYGSPSVTQTCSATALHSQSTPDDAWLRS
KLDLDAQSHSTTRLHPCISGLTMGLSYFFGGLIPMLPYFILSTVRDALLVSVVITVAILLAFGYAKNYIAIRSHG
AGFEGALQTLIIGVLAAGTSYAIVKLLDAGAS*
Coding >OphauB2|6312
ATGTCTGAAACGACACCTCTTGTACCACAACAAGCCAGGCCTTGCATCTCAGACTCGCTGCGCGATGTCATTATT
GGCTTCTCAGACGGGCTCACCGTGCCCTTTGCCCTAACAGCCGGCCTCTCCTCGCTCAACTCGTCGCGCCTTGTC
ATCATGGCTGGGCTGGCAGAGCTCTTCTCCGGCATGATATCAATGGGTCTGGGCGCCTACCTCGCCGCCGCGACG
GAACGCGCCTCTCAGCGCTCGCGCAAGCCTGCGCCACAAACAAACCTCGTTGCTGCAATCACTGCGCGATATCCA
TCCATTTCGCCCTCGATAGCTCAGCTATTTGTTGACGAGGTTGTTGCTGCGTCTACCTCGCCATGCTATGGCTCG
CCGTCTGTCACGCAGACTTGTAGCGCCACGGCTTTGCACTCGCAGTCTACCCCTGACGATGCATGGCTTCGTTCA
AAGCTCGACTTGGACGCTCAATCGCACTCGACTACTCGTCTTCACCCTTGCATCTCGGGCTTGACCATGGGGCTG
AGCTATTTCTTCGGCGGTCTTATCCCCATGCTTCCTTACTTTATCCTGTCTACCGTTCGCGATGCGCTGCTTGTT
TCTGTAGTGATTACCGTGGCGATTCTTCTTGCGTTTGGGTATGCAAAGAATTATATTGCTATTCGCTCCCATGGC
GCGGGTTTCGAGGGCGCGTTGCAGACGCTTATTATTGGCGTTTTGGCTGCTGGGACGAGCTATGCTATTGTTAAG
CTTTTAGATGCTGGCGCGTCTTGA
Transcript >OphauB2|6312
ATGTCTGAAACGACACCTCTTGTACCACAACAAGCCAGGCCTTGCATCTCAGACTCGCTGCGCGATGTCATTATT
GGCTTCTCAGACGGGCTCACCGTGCCCTTTGCCCTAACAGCCGGCCTCTCCTCGCTCAACTCGTCGCGCCTTGTC
ATCATGGCTGGGCTGGCAGAGCTCTTCTCCGGCATGATATCAATGGGTCTGGGCGCCTACCTCGCCGCCGCGACG
GAACGCGCCTCTCAGCGCTCGCGCAAGCCTGCGCCACAAACAAACCTCGTTGCTGCAATCACTGCGCGATATCCA
TCCATTTCGCCCTCGATAGCTCAGCTATTTGTTGACGAGGTTGTTGCTGCGTCTACCTCGCCATGCTATGGCTCG
CCGTCTGTCACGCAGACTTGTAGCGCCACGGCTTTGCACTCGCAGTCTACCCCTGACGATGCATGGCTTCGTTCA
AAGCTCGACTTGGACGCTCAATCGCACTCGACTACTCGTCTTCACCCTTGCATCTCGGGCTTGACCATGGGGCTG
AGCTATTTCTTCGGCGGTCTTATCCCCATGCTTCCTTACTTTATCCTGTCTACCGTTCGCGATGCGCTGCTTGTT
TCTGTAGTGATTACCGTGGCGATTCTTCTTGCGTTTGGGTATGCAAAGAATTATATTGCTATTCGCTCCCATGGC
GCGGGTTTCGAGGGCGCGTTGCAGACGCTTATTATTGGCGTTTTGGCTGCTGGGACGAGCTATGCTATTGTTAAG
CTTTTAGATGCTGGCGCGTCTTGA
Gene >OphauB2|6312
ATGTCTGAAACGACACCTCTTGTACCACAACAAGCCAGGCCTTGCATCTCAGACTCGCTGCGCGATGTCATTATT
GGCTTCTCAGACGGGCTCACCGTGCCCTTTGCCCTAACAGCCGGCCTCTCCTCGCTCAACTCGTCGCGCCTTGTC
ATCATGGCTGGGCTGGCAGAGCTCTTCTCCGGCATGATATCAATGGGTCTGGGCGCCTACCTCGCCGCCGCGACG
GAACGCGCCTCTCAGCGCTCGCGCAAGCCTGCGCCACAAACAAACCTCGTTGCTGCAATCACTGCGCGATATCCA
TCCATTTCGCCCTCGATAGCTCAGCTATTTGTTGACGAGGTTGTTGCTGCGTCTACCTCGCCATGCTATGGCTCG
CCGTCTGTCACGCAGACTTGTAGCGCCACGGCTTTGCACTCGCAGTCTACCCCTGACGATGCATGGCTTCGTTCA
AAGCTCGACTTGGACGCTCAATCGCACTCGACTACTCGTCTTCACCCTTGCATCTCGGGCTTGACCATGGGGCTG
AGCTATTTCTTCGGCGGTCTTATCCCCATGCTTCCTTACTTTATCCTGTCTACCGTTCGCGATGCGCTGCTTGTT
TCTGTAGTGATTACCGTGGCGATTCTTCTTGCGTTTGGGTATGCAAAGAATTATATTGCTATTCGCTCCCATGGC
GCGGGTTTCGAGGGCGCGTTGCAGACGCTTATTATTGGCGTTTTGGCTGCTGGGACGAGCTATGCTATTGTTAAG
CTTTTAGATGCTGGCGCGTCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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