© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|6307 |
| Gene name | |
| Location | Contig_57:20987..21972 |
| Strand | + |
| Gene length (bp) | 985 |
| Transcript length (bp) | 927 |
| Coding sequence length (bp) | 927 |
| Protein length (aa) | 309 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09749 | HVSL | Uncharacterised conserved protein | 7.6E-82 | 43 | 292 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7SEZ0|USB1_NEUCR | U6 snRNA phosphodiesterase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=usb1 PE=3 SV=2 | 31 | 293 | 9.0E-52 |
| sp|Q91W78|USB1_MOUSE | U6 snRNA phosphodiesterase OS=Mus musculus GN=Usb1 PE=2 SV=1 | 3 | 293 | 4.0E-10 |
| sp|Q5I0I5|USB1_RAT | U6 snRNA phosphodiesterase OS=Rattus norvegicus GN=Usb1 PE=2 SV=1 | 3 | 293 | 5.0E-10 |
| sp|Q9VHB3|USB1_DROME | U6 snRNA phosphodiesterase OS=Drosophila melanogaster GN=CG16790 PE=2 SV=1 | 59 | 253 | 6.0E-09 |
| sp|Q0II50|USB1_BOVIN | U6 snRNA phosphodiesterase OS=Bos taurus GN=USB1 PE=2 SV=1 | 3 | 293 | 1.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7SEZ0|USB1_NEUCR | U6 snRNA phosphodiesterase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=usb1 PE=3 SV=2 | 31 | 293 | 9.0E-52 |
| sp|Q91W78|USB1_MOUSE | U6 snRNA phosphodiesterase OS=Mus musculus GN=Usb1 PE=2 SV=1 | 3 | 293 | 4.0E-10 |
| sp|Q5I0I5|USB1_RAT | U6 snRNA phosphodiesterase OS=Rattus norvegicus GN=Usb1 PE=2 SV=1 | 3 | 293 | 5.0E-10 |
| sp|Q9VHB3|USB1_DROME | U6 snRNA phosphodiesterase OS=Drosophila melanogaster GN=CG16790 PE=2 SV=1 | 59 | 253 | 6.0E-09 |
| sp|Q0II50|USB1_BOVIN | U6 snRNA phosphodiesterase OS=Bos taurus GN=USB1 PE=2 SV=1 | 3 | 293 | 1.0E-08 |
| sp|Q7ZYI9|USB1_XENLA | U6 snRNA phosphodiesterase OS=Xenopus laevis GN=usb1 PE=2 SV=1 | 1 | 294 | 1.0E-07 |
| sp|Q6DEF6|USB1_DANRE | U6 snRNA phosphodiesterase OS=Danio rerio GN=usb1 PE=2 SV=1 | 44 | 293 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0034477 | U6 snRNA 3'-end processing | Yes |
| GO:0004518 | nuclease activity | Yes |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0016073 | snRNA metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0006396 | RNA processing | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0034472 | snRNA 3'-end processing | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0016180 | snRNA processing | No |
| GO:0034470 | ncRNA processing | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0031123 | RNA 3'-end processing | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 28 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|6307 MALVDYSSSAESDNHHDEAPKRKRRRRVGTPSPACGEYESAMPPLPAAFHDLYASTVRHSVVDDPSLHQGRKRQI PHIRGNWPSHIYIEWHPTTKQHHVLCQLVDAVAAQLADGFKLHSLLTSDLSAPLPLHISLSRPMSLPGAEKEAFL AHLGQLLQGSAVPRRGQATSTTAAFTVRLTGLAWFPSPDSNRTFLVLRIASSDDADANPELAALLTRCNTVAARF KQPPLYAKMERQDMCFHISVGWTLGRLEQGSDLATLTDKPPFCDALDWRIEVAGVKAKMGNVVSHIPLLGSRRAS GPIDQSLM* |
| Coding | >OphauB2|6307 ATGGCCCTGGTCGATTATTCCTCATCCGCCGAGTCAGATAACCACCATGACGAGGCACCAAAGCGAAAGCGCCGC CGACGTGTCGGCACTCCATCTCCAGCTTGTGGCGAATACGAATCGGCCATGCCCCCACTCCCTGCCGCTTTCCAC GATCTCTACGCCTCAACCGTTCGCCACAGTGTCGTCGACGACCCCAGCCTCCACCAGGGCCGTAAACGTCAGATT CCACATATCCGGGGCAACTGGCCTTCGCACATCTACATTGAATGGCACCCGACTACGAAGCAGCATCATGTGCTT TGCCAGCTTGTCGACGCTGTTGCCGCCCAGCTTGCAGATGGCTTCAAATTACACAGCCTCTTGACGAGCGATTTG AGCGCACCGCTGCCGCTCCACATTAGTCTCTCGCGCCCCATGAGCCTCCCTGGCGCTGAAAAGGAGGCCTTTCTT GCCCACCTTGGGCAGCTTTTGCAAGGCTCGGCTGTGCCTCGTCGTGGCCAAGCGACTAGCACCACGGCTGCCTTT ACTGTGCGTCTGACGGGGCTGGCCTGGTTTCCCTCGCCCGACTCGAATCGGACTTTTCTCGTGCTGCGAATTGCA AGCTCCGACGACGCCGACGCTAACCCAGAGCTCGCAGCGTTGCTTACGCGGTGCAACACTGTTGCTGCGCGCTTC AAGCAACCGCCACTGTACGCAAAGATGGAGCGCCAAGACATGTGCTTCCACATCTCTGTTGGCTGGACACTGGGA CGACTGGAGCAAGGCTCAGACCTTGCCACGCTGACGGACAAGCCGCCCTTTTGCGACGCACTAGACTGGAGAATT GAAGTGGCTGGTGTCAAGGCCAAGATGGGCAATGTGGTGAGCCACATTCCACTGTTGGGCTCTCGCCGCGCGAGC GGGCCTATTGACCAGTCTTTGATGTGA |
| Transcript | >OphauB2|6307 ATGGCCCTGGTCGATTATTCCTCATCCGCCGAGTCAGATAACCACCATGACGAGGCACCAAAGCGAAAGCGCCGC CGACGTGTCGGCACTCCATCTCCAGCTTGTGGCGAATACGAATCGGCCATGCCCCCACTCCCTGCCGCTTTCCAC GATCTCTACGCCTCAACCGTTCGCCACAGTGTCGTCGACGACCCCAGCCTCCACCAGGGCCGTAAACGTCAGATT CCACATATCCGGGGCAACTGGCCTTCGCACATCTACATTGAATGGCACCCGACTACGAAGCAGCATCATGTGCTT TGCCAGCTTGTCGACGCTGTTGCCGCCCAGCTTGCAGATGGCTTCAAATTACACAGCCTCTTGACGAGCGATTTG AGCGCACCGCTGCCGCTCCACATTAGTCTCTCGCGCCCCATGAGCCTCCCTGGCGCTGAAAAGGAGGCCTTTCTT GCCCACCTTGGGCAGCTTTTGCAAGGCTCGGCTGTGCCTCGTCGTGGCCAAGCGACTAGCACCACGGCTGCCTTT ACTGTGCGTCTGACGGGGCTGGCCTGGTTTCCCTCGCCCGACTCGAATCGGACTTTTCTCGTGCTGCGAATTGCA AGCTCCGACGACGCCGACGCTAACCCAGAGCTCGCAGCGTTGCTTACGCGGTGCAACACTGTTGCTGCGCGCTTC AAGCAACCGCCACTGTACGCAAAGATGGAGCGCCAAGACATGTGCTTCCACATCTCTGTTGGCTGGACACTGGGA CGACTGGAGCAAGGCTCAGACCTTGCCACGCTGACGGACAAGCCGCCCTTTTGCGACGCACTAGACTGGAGAATT GAAGTGGCTGGTGTCAAGGCCAAGATGGGCAATGTGGTGAGCCACATTCCACTGTTGGGCTCTCGCCGCGCGAGC GGGCCTATTGACCAGTCTTTGATGTGA |
| Gene | >OphauB2|6307 ATGGCCCTGGTCGATTATTCCTCATCCGCCGAGTCAGATAACCACCATGACGAGGCACCAAAGCGAAAGCGCCGC CGACGTGTCGGCACTCCATCTCCAGCTTGTGGCGAATACGAATCGGCCATGCCCCCACTCCCTGCCGCTTTCCAC GATCTCTACGCCTCAACCGTTCGCCACAGTGTCGTCGACGACCCCAGCCTCCACCAGGGCCGTAAACGTCAGATT CCACATATCCGGGGCAACTGGCCTTCGCACATCTACATTGAATGTTGGGAAGCCTCGCATTATGGGCCGACGGCG CCACTGAGCTGACGCGTCGAGGATAGGGCACCCGACTACGAAGCAGCATCATGTGCTTTGCCAGCTTGTCGACGC TGTTGCCGCCCAGCTTGCAGATGGCTTCAAATTACACAGCCTCTTGACGAGCGATTTGAGCGCACCGCTGCCGCT CCACATTAGTCTCTCGCGCCCCATGAGCCTCCCTGGCGCTGAAAAGGAGGCCTTTCTTGCCCACCTTGGGCAGCT TTTGCAAGGCTCGGCTGTGCCTCGTCGTGGCCAAGCGACTAGCACCACGGCTGCCTTTACTGTGCGTCTGACGGG GCTGGCCTGGTTTCCCTCGCCCGACTCGAATCGGACTTTTCTCGTGCTGCGAATTGCAAGCTCCGACGACGCCGA CGCTAACCCAGAGCTCGCAGCGTTGCTTACGCGGTGCAACACTGTTGCTGCGCGCTTCAAGCAACCGCCACTGTA CGCAAAGATGGAGCGCCAAGACATGTGCTTCCACATCTCTGTTGGCTGGACACTGGGACGACTGGAGCAAGGCTC AGACCTTGCCACGCTGACGGACAAGCCGCCCTTTTGCGACGCACTAGACTGGAGAATTGAAGTGGCTGGTGTCAA GGCCAAGATGGGCAATGTGGTGAGCCACATTCCACTGTTGGGCTCTCGCCGCGCGAGCGGGCCTATTGACCAGTC TTTGATGTGA |