Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|6278
Gene name
LocationContig_56:69408..70666
Strand+
Gene length (bp)1258
Transcript length (bp)1134
Coding sequence length (bp)1134
Protein length (aa) 378

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-13 153 222

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O74978|YQL5_SCHPO Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.05c PE=3 SV=1 85 263 2.0E-45
sp|Q6GL69|MK67I_XENTR MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis GN=nifk PE=2 SV=1 137 296 5.0E-31
sp|Q8JIY8|MK67I_DANRE MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio GN=nifk PE=2 SV=2 151 296 2.0E-29
sp|Q7SYS2|MK67I_XENLA MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis GN=nifk PE=2 SV=2 137 291 1.0E-28
sp|P53927|NOP15_YEAST Ribosome biogenesis protein 15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP15 PE=1 SV=1 151 238 4.0E-27
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Swissprot ID Swissprot Description Start End E-value
sp|O74978|YQL5_SCHPO Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.05c PE=3 SV=1 85 263 2.0E-45
sp|Q6GL69|MK67I_XENTR MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis GN=nifk PE=2 SV=1 137 296 5.0E-31
sp|Q8JIY8|MK67I_DANRE MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio GN=nifk PE=2 SV=2 151 296 2.0E-29
sp|Q7SYS2|MK67I_XENLA MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis GN=nifk PE=2 SV=2 137 291 1.0E-28
sp|P53927|NOP15_YEAST Ribosome biogenesis protein 15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP15 PE=1 SV=1 151 238 4.0E-27
sp|Q3SZM1|MK67I_BOVIN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus GN=NIFK PE=2 SV=1 151 246 8.0E-27
sp|Q9BYG3|MK67I_HUMAN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Homo sapiens GN=NIFK PE=1 SV=1 151 246 6.0E-24
sp|Q5RJM0|MK67I_RAT MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Rattus norvegicus GN=Nifk PE=2 SV=1 151 244 3.0E-21
sp|Q91VE6|MK67I_MOUSE MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Mus musculus GN=Nifk PE=1 SV=1 149 246 3.0E-21
sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana GN=At3g47120 PE=2 SV=1 152 235 4.0E-08
sp|P25299|RNA15_YEAST mRNA 3'-end-processing protein RNA15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNA15 PE=1 SV=1 152 224 7.0E-08
sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1 SV=1 153 229 4.0E-07
sp|O43040|CTF1_SCHPO Cleavage and termination factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ctf1 PE=1 SV=1 151 214 3.0E-06
sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2 153 295 3.0E-06
sp|Q6FWS2|ESF2_CANGA Pre-rRNA-processing protein ESF2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ESF2 PE=3 SV=1 89 270 5.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003676 nucleic acid binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 70 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|6278
MAPELRKRKEAKQDVATKTKVERKTTTKTKRKAVDEASPVSLKKQKSTKKTLVQADEKPAKEPVKPKQPKKIAKQ
VEVTKEEIAPKSPAKEPESEDEEDKGILLLADELDSSDDDATENTSLFKPGQDVGNVPAVSEEVRKAAKKPAGER
GVIYVGRIPHGFYEYEMRQYMSQFGPITRLRLSRNPKTGASRHFAFIEFEEASTAEIVAKTMNNYLLFGHLLKVK
VVPPSELHEEVFKGANTRFKKVPWNKIAGKKLEKPHTKSAWEAKVEKERIAREGKLAKLKAIGYEFEAPEFKDVP
LPVPRLVESEDQETKAVESATTLSEAVDEAALPKDQAGQTDRAQETKPVTTISSTKTKVKAKAKTSKFAKSKKRA
KA*
Coding >OphauB2|6278
ATGGCACCTGAACTCAGAAAAAGAAAAGAAGCTAAGCAGGATGTGGCAACAAAAACAAAGGTGGAGAGAAAAACG
ACAACAAAGACCAAGAGAAAAGCTGTCGATGAGGCCTCGCCCGTATCATTGAAGAAGCAAAAGTCAACCAAGAAG
ACATTGGTTCAGGCCGACGAAAAGCCTGCAAAAGAGCCCGTTAAACCCAAGCAACCAAAGAAAATTGCCAAACAA
GTCGAAGTCACCAAGGAGGAGATTGCTCCCAAATCTCCCGCGAAGGAACCAGAATCAGAGGACGAAGAAGACAAG
GGCATTCTGCTGCTGGCTGATGAGCTCGACTCTAGCGACGATGATGCTACGGAAAACACGTCTCTGTTCAAGCCC
GGACAGGACGTCGGGAATGTACCTGCTGTCTCTGAAGAGGTGCGCAAGGCAGCAAAGAAGCCAGCGGGTGAGCGA
GGTGTCATTTACGTTGGCCGCATCCCACACGGCTTCTATGAATATGAAATGAGACAATACATGTCCCAATTCGGC
CCCATCACAAGACTTCGACTTTCGCGCAATCCCAAGACGGGTGCGAGCAGACATTTCGCCTTTATCGAATTCGAA
GAAGCGAGCACGGCCGAAATTGTTGCAAAGACAATGAACAACTACCTGCTCTTTGGGCATCTTCTCAAGGTCAAA
GTGGTGCCTCCAAGTGAGCTGCATGAAGAGGTCTTCAAGGGCGCCAATACCAGGTTCAAAAAGGTGCCATGGAAC
AAGATAGCGGGCAAGAAACTGGAGAAGCCGCATACAAAATCAGCTTGGGAGGCCAAAGTGGAAAAGGAGCGGATC
GCTCGAGAAGGAAAATTGGCCAAGCTCAAGGCAATTGGCTATGAGTTTGAGGCCCCTGAGTTCAAAGATGTCCCT
CTGCCAGTTCCTAGGCTAGTGGAGAGTGAGGACCAGGAGACAAAAGCTGTTGAGTCGGCTACGACTTTGAGCGAA
GCGGTTGATGAGGCGGCTTTACCCAAAGATCAGGCTGGCCAGACAGACAGGGCACAAGAGACAAAGCCGGTGACT
ACAATATCCTCCACAAAGACCAAGGTCAAGGCCAAGGCCAAGACGTCAAAATTTGCCAAGTCGAAGAAGAGGGCA
AAGGCCTAA
Transcript >OphauB2|6278
ATGGCACCTGAACTCAGAAAAAGAAAAGAAGCTAAGCAGGATGTGGCAACAAAAACAAAGGTGGAGAGAAAAACG
ACAACAAAGACCAAGAGAAAAGCTGTCGATGAGGCCTCGCCCGTATCATTGAAGAAGCAAAAGTCAACCAAGAAG
ACATTGGTTCAGGCCGACGAAAAGCCTGCAAAAGAGCCCGTTAAACCCAAGCAACCAAAGAAAATTGCCAAACAA
GTCGAAGTCACCAAGGAGGAGATTGCTCCCAAATCTCCCGCGAAGGAACCAGAATCAGAGGACGAAGAAGACAAG
GGCATTCTGCTGCTGGCTGATGAGCTCGACTCTAGCGACGATGATGCTACGGAAAACACGTCTCTGTTCAAGCCC
GGACAGGACGTCGGGAATGTACCTGCTGTCTCTGAAGAGGTGCGCAAGGCAGCAAAGAAGCCAGCGGGTGAGCGA
GGTGTCATTTACGTTGGCCGCATCCCACACGGCTTCTATGAATATGAAATGAGACAATACATGTCCCAATTCGGC
CCCATCACAAGACTTCGACTTTCGCGCAATCCCAAGACGGGTGCGAGCAGACATTTCGCCTTTATCGAATTCGAA
GAAGCGAGCACGGCCGAAATTGTTGCAAAGACAATGAACAACTACCTGCTCTTTGGGCATCTTCTCAAGGTCAAA
GTGGTGCCTCCAAGTGAGCTGCATGAAGAGGTCTTCAAGGGCGCCAATACCAGGTTCAAAAAGGTGCCATGGAAC
AAGATAGCGGGCAAGAAACTGGAGAAGCCGCATACAAAATCAGCTTGGGAGGCCAAAGTGGAAAAGGAGCGGATC
GCTCGAGAAGGAAAATTGGCCAAGCTCAAGGCAATTGGCTATGAGTTTGAGGCCCCTGAGTTCAAAGATGTCCCT
CTGCCAGTTCCTAGGCTAGTGGAGAGTGAGGACCAGGAGACAAAAGCTGTTGAGTCGGCTACGACTTTGAGCGAA
GCGGTTGATGAGGCGGCTTTACCCAAAGATCAGGCTGGCCAGACAGACAGGGCACAAGAGACAAAGCCGGTGACT
ACAATATCCTCCACAAAGACCAAGGTCAAGGCCAAGGCCAAGACGTCAAAATTTGCCAAGTCGAAGAAGAGGGCA
AAGGCCTAA
Gene >OphauB2|6278
ATGGCACCTGAACTCAGAAAAAGAAAAGGTAAATTACAAATTGTACGCTACAAGTATATTTTATTAATTTTGAAT
ATTCCTCACAGAAGCTAAGCAGGATGTGGCAACAAAAACAAAGGTGGAGAGAAAAACGACAACAAAGACCAAGAG
AAAAGGTGAAAGGGACCACACCGAGTAAATTCTCACTTCTCTCAGCTTGCAACTAAATGCAATCAATCCAGCTGT
CGATGAGGCCTCGCCCGTATCATTGAAGAAGCAAAAGTCAACCAAGAAGACATTGGTTCAGGCCGACGAAAAGCC
TGCAAAAGAGCCCGTTAAACCCAAGCAACCAAAGAAAATTGCCAAACAAGTCGAAGTCACCAAGGAGGAGATTGC
TCCCAAATCTCCCGCGAAGGAACCAGAATCAGAGGACGAAGAAGACAAGGGCATTCTGCTGCTGGCTGATGAGCT
CGACTCTAGCGACGATGATGCTACGGAAAACACGTCTCTGTTCAAGCCCGGACAGGACGTCGGGAATGTACCTGC
TGTCTCTGAAGAGGTGCGCAAGGCAGCAAAGAAGCCAGCGGGTGAGCGAGGTGTCATTTACGTTGGCCGCATCCC
ACACGGCTTCTATGAATATGAAATGAGACAATACATGTCCCAATTCGGCCCCATCACAAGACTTCGACTTTCGCG
CAATCCCAAGACGGGTGCGAGCAGACATTTCGCCTTTATCGAATTCGAAGAAGCGAGCACGGCCGAAATTGTTGC
AAAGACAATGAACAACTACCTGCTCTTTGGGCATCTTCTCAAGGTCAAAGTGGTGCCTCCAAGTGAGCTGCATGA
AGAGGTCTTCAAGGGCGCCAATACCAGGTTCAAAAAGGTGCCATGGAACAAGATAGCGGGCAAGAAACTGGAGAA
GCCGCATACAAAATCAGCTTGGGAGGCCAAAGTGGAAAAGGAGCGGATCGCTCGAGAAGGAAAATTGGCCAAGCT
CAAGGCAATTGGCTATGAGTTTGAGGCCCCTGAGTTCAAAGATGTCCCTCTGCCAGTTCCTAGGCTAGTGGAGAG
TGAGGACCAGGAGACAAAAGCTGTTGAGTCGGCTACGACTTTGAGCGAAGCGGTTGATGAGGCGGCTTTACCCAA
AGATCAGGCTGGCCAGACAGACAGGGCACAAGAGACAAAGCCGGTGACTACAATATCCTCCACAAAGACCAAGGT
CAAGGCCAAGGCCAAGACGTCAAAATTTGCCAAGTCGAAGAAGAGGGCAAAGGCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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