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| Protein ID | OphauB2|6176 |
| Gene name | |
| Location | Contig_54:59436..60021 |
| Strand | + |
| Gene length (bp) | 585 |
| Transcript length (bp) | 399 |
| Coding sequence length (bp) | 399 |
| Protein length (aa) | 133 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13656 | RNA_pol_L_2 | RNA polymerase Rpb3/Rpb11 dimerisation domain | 3.2E-30 | 44 | 115 |
| PF01193 | RNA_pol_L | RNA polymerase Rpb3/Rpb11 dimerisation domain | 4.7E-13 | 45 | 110 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P28000|RPAC2_YEAST | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC19 PE=1 SV=1 | 28 | 117 | 2.0E-34 |
| sp|Q09177|RPAC2_SCHPO | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc19 PE=2 SV=1 | 6 | 123 | 2.0E-32 |
| sp|Q5XK67|RPAC2_XENLA | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis GN=polr1d PE=3 SV=1 | 21 | 125 | 9.0E-25 |
| sp|Q9VIZ0|RPAC2_DROME | Probable DNA-directed RNA polymerases I and III subunit RPAC2 OS=Drosophila melanogaster GN=l(2)37Cg PE=3 SV=1 | 41 | 126 | 8.0E-24 |
| sp|Q1RMG8|RPAC2_BOVIN | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus GN=POLR1D PE=2 SV=1 | 38 | 125 | 2.0E-23 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P28000|RPAC2_YEAST | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC19 PE=1 SV=1 | 28 | 117 | 2.0E-34 |
| sp|Q09177|RPAC2_SCHPO | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc19 PE=2 SV=1 | 6 | 123 | 2.0E-32 |
| sp|Q5XK67|RPAC2_XENLA | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis GN=polr1d PE=3 SV=1 | 21 | 125 | 9.0E-25 |
| sp|Q9VIZ0|RPAC2_DROME | Probable DNA-directed RNA polymerases I and III subunit RPAC2 OS=Drosophila melanogaster GN=l(2)37Cg PE=3 SV=1 | 41 | 126 | 8.0E-24 |
| sp|Q1RMG8|RPAC2_BOVIN | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus GN=POLR1D PE=2 SV=1 | 38 | 125 | 2.0E-23 |
| sp|Q9Y2S0|RPAC2_HUMAN | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens GN=POLR1D PE=1 SV=1 | 38 | 125 | 8.0E-23 |
| sp|P97304|RPAC2_MOUSE | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus GN=Polr1d PE=1 SV=1 | 38 | 129 | 2.0E-22 |
| sp|Q54ES6|RPC19_DICDI | DNA-directed RNA polymerases I and III subunit rpc19 OS=Dictyostelium discoideum GN=rpc19 PE=3 SV=1 | 29 | 122 | 2.0E-22 |
| sp|Q6DRI4|RPAC2_DANRE | DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio GN=polr1d PE=3 SV=1 | 38 | 125 | 2.0E-21 |
| sp|Q61IX2|RPAC2_CAEBR | Probable DNA-directed RNA polymerases I and III subunit RPAC2 OS=Caenorhabditis briggsae GN=rpac-19 PE=3 SV=1 | 50 | 120 | 3.0E-12 |
| sp|P34476|RPAC2_CAEEL | Probable DNA-directed RNA polymerases I and III subunit RPAC2 OS=Caenorhabditis elegans GN=rpac-19 PE=3 SV=1 | 50 | 120 | 6.0E-12 |
| sp|Q7PVQ9|RPB11_ANOGA | DNA-directed RNA polymerase II subunit RPB11 OS=Anopheles gambiae GN=Rpb11 PE=3 SV=2 | 27 | 120 | 2.0E-11 |
| sp|Q9VJE4|RPB11_DROME | DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster GN=Rpb11 PE=3 SV=1 | 27 | 120 | 1.0E-10 |
| sp|Q9XVH6|RPB11_CAEEL | Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis elegans GN=rpb-11 PE=3 SV=1 | 42 | 106 | 1.0E-09 |
| sp|Q60SM4|RPB11_CAEBR | Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis briggsae GN=rpb-11 PE=3 SV=1 | 42 | 106 | 1.0E-09 |
| sp|Q38859|NRPBB_ARATH | DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana GN=NRPB11 PE=1 SV=1 | 42 | 118 | 1.0E-08 |
| sp|P52435|RPB11_HUMAN | DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens GN=POLR2J PE=1 SV=1 | 42 | 120 | 1.0E-08 |
| sp|Q32P79|RPB11_BOVIN | DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus GN=POLR2J PE=3 SV=1 | 42 | 120 | 1.0E-08 |
| sp|Q9H1A7|RPB1C_HUMAN | DNA-directed RNA polymerase II subunit RPB11-b2 OS=Homo sapiens GN=POLR2J3 PE=3 SV=1 | 42 | 120 | 2.0E-08 |
| sp|Q9GZM3|RPB1B_HUMAN | DNA-directed RNA polymerase II subunit RPB11-b1 OS=Homo sapiens GN=POLR2J2 PE=1 SV=2 | 42 | 120 | 2.0E-08 |
| sp|O08740|RPB11_MOUSE | DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus GN=Polr2j PE=1 SV=1 | 42 | 120 | 2.0E-08 |
| sp|Q57832|RPOL_METJA | DNA-directed RNA polymerase subunit L OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rpoL PE=1 SV=1 | 41 | 121 | 2.0E-07 |
| sp|P38902|RPB11_YEAST | DNA-directed RNA polymerase II subunit RPB11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB11 PE=1 SV=1 | 42 | 127 | 6.0E-07 |
| sp|Q86JJ5|RPB11_DICDI | DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum GN=polr2j PE=3 SV=1 | 42 | 103 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | Yes |
| GO:0046983 | protein dimerization activity | Yes |
| GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | Yes |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0097747 | RNA polymerase activity | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0005488 | binding | No |
| GO:0008150 | biological_process | No |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0140098 | catalytic activity, acting on RNA | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0034062 | 5'-3' RNA polymerase activity | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0016740 | transferase activity | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0005515 | protein binding | No |
| GO:0097659 | nucleic acid-templated transcription | No |
| GO:0009987 | cellular process | No |
| GO:0003824 | catalytic activity | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0016779 | nucleotidyltransferase activity | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 37 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|6176 MQDAPIPDPSEVAQGTAENEVASEDDEPEVQQIRLLPGSTDSAASFEFTDEGHTLGNALRYIITKNPNVEFCAYA IPHPSEPKMNLRIQTWEGTAIDALEKGLADLQDMCDVVTDKFQTARDTFKAENGPTE* |
| Coding | >OphauB2|6176 ATGCAAGACGCGCCAATACCTGACCCCTCAGAGGTGGCTCAGGGCACCGCAGAGAATGAGGTCGCTTCAGAAGAC GACGAACCCGAAGTCCAGCAGATCAGACTTTTGCCAGGGTCGACAGATTCAGCAGCCTCGTTCGAATTCACTGAC GAGGGTCATACGCTGGGAAACGCTCTGAGATATATCATCACGAAAAATCCTAACGTGGAATTCTGTGCCTACGCT ATTCCACATCCTTCAGAGCCCAAGATGAACTTGAGAATACAGACTTGGGAGGGGACCGCCATCGACGCCTTGGAA AAGGGGCTTGCTGATCTGCAAGACATGTGTGATGTCGTGACGGACAAATTCCAGACAGCAAGGGACACATTCAAG GCAGAGAATGGCCCTACTGAGTAA |
| Transcript | >OphauB2|6176 ATGCAAGACGCGCCAATACCTGACCCCTCAGAGGTGGCTCAGGGCACCGCAGAGAATGAGGTCGCTTCAGAAGAC GACGAACCCGAAGTCCAGCAGATCAGACTTTTGCCAGGGTCGACAGATTCAGCAGCCTCGTTCGAATTCACTGAC GAGGGTCATACGCTGGGAAACGCTCTGAGATATATCATCACGAAAAATCCTAACGTGGAATTCTGTGCCTACGCT ATTCCACATCCTTCAGAGCCCAAGATGAACTTGAGAATACAGACTTGGGAGGGGACCGCCATCGACGCCTTGGAA AAGGGGCTTGCTGATCTGCAAGACATGTGTGATGTCGTGACGGACAAATTCCAGACAGCAAGGGACACATTCAAG GCAGAGAATGGCCCTACTGAGTAA |
| Gene | >OphauB2|6176 ATGCAAGACGCGCCAATACCTGACCCCTCAGAGGTGGCTCAGGGCACCGCAGAGAATGAGGTCGCTTCAGAAGAC GACGAACCCGAAGTCCAGCAGATCAGACTTGTACGTCTTGGCACATCATCTATTCATCAAGTCGTACATTCGACT AACATGCATGCAGTTGCCAGGGTCGACAGATTCAGCAGCCTCGTTCGAATTCACTGACGAGGGTCATACGCTGGG AAACGCTCTGAGATATATCATCACGAAAAAGTCAATATTTCCCAGGTTATATACGAGCTTTGCGAGCCAGCACTG ACCGAGTTGTAGTCCTAACGTGGAATTCTGTGCCTACGCTATTCCACATCCTTCAGAGCCCAAGATGAACTTGAG AATACAGACTTGGGGTATGTGTATCAGAGTGGCTTGAACAGAGCCCAAAACTGTCGCTTCAGAGGTAGCTGACAG GCTTGTATAGAGGGGACCGCCATCGACGCCTTGGAAAAGGGGCTTGCTGATCTGCAAGACATGTGTGATGTCGTG ACGGACAAATTCCAGACAGCAAGGGACACATTCAAGGCAGAGAATGGCCCTACTGAGTAA |