Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|6122
Gene name
LocationContig_53:30145..30644
Strand+
Gene length (bp)499
Transcript length (bp)423
Coding sequence length (bp)423
Protein length (aa) 141

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03874 RNA_pol_Rpb4 RNA polymerase Rpb4 1.7E-20 11 125

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9C0Z9|RPC9_SCHPO DNA-directed RNA polymerase III subunit rpc9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc17 PE=1 SV=1 1 122 5.0E-10
sp|P47076|RPC9_YEAST DNA-directed RNA polymerase III subunit RPC9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC17 PE=1 SV=2 1 122 4.0E-09
sp|O75575|RPC9_HUMAN DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens GN=CRCP PE=1 SV=1 1 140 6.0E-09
sp|A0JN61|RPC9_BOVIN DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus GN=CRCP PE=2 SV=1 1 139 2.0E-08
sp|Q60482|RPC9_CAVPO DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus GN=CRCP PE=2 SV=1 1 103 1.0E-07
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9C0Z9|RPC9_SCHPO DNA-directed RNA polymerase III subunit rpc9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc17 PE=1 SV=1 1 122 5.0E-10
sp|P47076|RPC9_YEAST DNA-directed RNA polymerase III subunit RPC9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC17 PE=1 SV=2 1 122 4.0E-09
sp|O75575|RPC9_HUMAN DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens GN=CRCP PE=1 SV=1 1 140 6.0E-09
sp|A0JN61|RPC9_BOVIN DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus GN=CRCP PE=2 SV=1 1 139 2.0E-08
sp|Q60482|RPC9_CAVPO DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus GN=CRCP PE=2 SV=1 1 103 1.0E-07
sp|Q8VHM6|RPC9_RAT DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus GN=Crcp PE=2 SV=1 1 137 1.0E-07
sp|O35427|RPC9_MOUSE DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus GN=Crcp PE=2 SV=1 1 137 2.0E-07
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GO

GO Term Description Terminal node
GO:0030880 RNA polymerase complex Yes
GO:0006352 DNA-templated transcription, initiation Yes
GO:0034641 cellular nitrogen compound metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0018130 heterocycle biosynthetic process No
GO:1902494 catalytic complex No
GO:1990234 transferase complex No
GO:1901576 organic substance biosynthetic process No
GO:0140535 intracellular protein-containing complex No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0009059 macromolecule biosynthetic process No
GO:0008150 biological_process No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0005575 cellular_component No
GO:0043170 macromolecule metabolic process No
GO:0019438 aromatic compound biosynthetic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0044249 cellular biosynthetic process No
GO:0071704 organic substance metabolic process No
GO:0032774 RNA biosynthetic process No
GO:0044237 cellular metabolic process No
GO:0008152 metabolic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0009987 cellular process No
GO:0044238 primary metabolic process No
GO:0032991 protein-containing complex No
GO:0009058 biosynthetic process No
GO:0061695 transferase complex, transferring phosphorus-containing groups No
GO:0046483 heterocycle metabolic process No
GO:0016070 RNA metabolic process No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup1564
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|6594
Ophiocordyceps australis map64 (Brazil) OphauB2|6122 (this protein)
Ophiocordyceps camponoti-floridani Ophcf2|05821
Ophiocordyceps camponoti-rufipedis Ophun1|738
Ophiocordyceps kimflemingae Ophio5|5763
Ophiocordyceps subramaniannii Hirsu2|1147

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|6122
MKIIESQSAVLTNYEVWQHLVAQKQRYQCNKRRGPPNLETVVREVLSWMRTRPGPLAQEPPTYSDERIAQLLEGL
RRYTLSKGEVLVILNLRPTSVVALNTIVDDLGERFTEEQQEQIVAVIVEVLGQFEQDQASDTAIA*
Coding >OphauB2|6122
ATGAAGATCATCGAGTCCCAGTCGGCGGTGTTGACCAATTATGAAGTCTGGCAGCATCTAGTCGCCCAAAAACAG
CGGTATCAATGCAACAAGCGACGCGGTCCGCCAAATCTCGAGACTGTCGTCAGAGAGGTGTTGAGTTGGATGCGA
ACGAGACCCGGCCCTTTGGCGCAGGAGCCGCCGACGTATAGCGACGAACGCATCGCGCAGCTGCTAGAAGGACTA
CGACGGTACACATTGTCCAAAGGAGAGGTGCTCGTTATCCTCAATCTGCGTCCCACGTCGGTCGTGGCGCTCAAC
ACCATTGTTGACGATTTGGGCGAGCGATTTACCGAGGAGCAGCAGGAGCAAATAGTGGCCGTCATCGTCGAGGTG
CTTGGCCAGTTTGAGCAGGACCAAGCCTCCGACACAGCAATTGCCTAG
Transcript >OphauB2|6122
ATGAAGATCATCGAGTCCCAGTCGGCGGTGTTGACCAATTATGAAGTCTGGCAGCATCTAGTCGCCCAAAAACAG
CGGTATCAATGCAACAAGCGACGCGGTCCGCCAAATCTCGAGACTGTCGTCAGAGAGGTGTTGAGTTGGATGCGA
ACGAGACCCGGCCCTTTGGCGCAGGAGCCGCCGACGTATAGCGACGAACGCATCGCGCAGCTGCTAGAAGGACTA
CGACGGTACACATTGTCCAAAGGAGAGGTGCTCGTTATCCTCAATCTGCGTCCCACGTCGGTCGTGGCGCTCAAC
ACCATTGTTGACGATTTGGGCGAGCGATTTACCGAGGAGCAGCAGGAGCAAATAGTGGCCGTCATCGTCGAGGTG
CTTGGCCAGTTTGAGCAGGACCAAGCCTCCGACACAGCAATTGCCTAG
Gene >OphauB2|6122
ATGAAGATCATCGAGTCCCAGTCGGCGGTGTTGACCAATTATGAAGTCTGGCAGCATCTAGTCGCCCAAAAACAG
CGGTATCAATGCAACAAGCGACGCGGTCCGCCAAATCTCGAGACTGTCGTCAGAGAGGTGATGATTGCCGGCCAT
GGTTGGCAAGGAGGCGAATACACGAGGCTAACTAGGGATGCATGATTACATATTCAAGGTGTTGAGTTGGATGCG
AACGAGACCCGGCCCTTTGGCGCAGGAGCCGCCGACGTATAGCGACGAACGCATCGCGCAGCTGCTAGAAGGACT
ACGACGGTACACATTGTCCAAAGGAGAGGTGCTCGTTATCCTCAATCTGCGTCCCACGTCGGTCGTGGCGCTCAA
CACCATTGTTGACGATTTGGGCGAGCGATTTACCGAGGAGCAGCAGGAGCAAATAGTGGCCGTCATCGTCGAGGT
GCTTGGCCAGTTTGAGCAGGACCAAGCCTCCGACACAGCAATTGCCTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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