© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|6058 |
| Gene name | |
| Location | Contig_51:65506..66679 |
| Strand | - |
| Gene length (bp) | 1173 |
| Transcript length (bp) | 1173 |
| Coding sequence length (bp) | 1173 |
| Protein length (aa) | 391 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04724 | Glyco_transf_17 | Glycosyltransferase family 17 | 2.7E-48 | 70 | 344 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09327|MGAT3_HUMAN | Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase OS=Homo sapiens GN=MGAT3 PE=2 SV=3 | 101 | 377 | 9.0E-10 |
| sp|Q02527|MGAT3_RAT | Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat3 PE=1 SV=2 | 101 | 378 | 4.0E-09 |
| sp|Q10470|MGAT3_MOUSE | Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase OS=Mus musculus GN=Mgat3 PE=2 SV=2 | 101 | 378 | 1.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0006487 | protein N-linked glycosylation | Yes |
| GO:0003830 | beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0003674 | molecular_function | No |
| GO:0016757 | glycosyltransferase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0008375 | acetylglucosaminyltransferase activity | No |
| GO:0036211 | protein modification process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016758 | hexosyltransferase activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0008152 | metabolic process | No |
| GO:0006486 | protein glycosylation | No |
| GO:0044238 | primary metabolic process | No |
| GO:0070085 | glycosylation | No |
| GO:0043413 | macromolecule glycosylation | No |
| GO:0140103 | catalytic activity, acting on a glycoprotein | No |
| GO:0019538 | protein metabolic process | No |
| GO:0008194 | UDP-glycosyltransferase activity | No |
| GO:0016740 | transferase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 28 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|6058 MVLRPFAAIVLFVALAWLAFNFGRGLGHLSTPTPHGISDIDLALPLDRLVLSPRPAHDAAAAAPSNSEASQASYY ASEATRDFCAAHGYQVFVPPSPPSRRKVFDLFMANSELDLIEIRLATLYNHVDYFVIVESLRTFQGRPKPLVVRD NWQRFSKFHDKIIYHVLEFPAGFAPRLTWDYEDLQRDASLEQVLPRLTGSQAPVEGDVIIVADVDEIPRPAALLV LRSCIFPRRLTLSSRFYYYSYQFRHMGADWPHPQATIWQGSDKTIRPTKLRASDGGSTMGRILESGTLQNAGWHC SSCFATIGDFLNKMASFSHMWMNEPKYRDVHRIAAAVRQGRDVWGRRQDVFERIDNNEDVPPPLLTESGRRRFGY MLSRDGESAGFSDYP* |
| Coding | >OphauB2|6058 ATGGTCTTGAGGCCATTTGCGGCCATTGTCCTCTTTGTGGCCTTGGCCTGGCTCGCCTTCAATTTCGGCCGCGGC CTGGGCCACTTGTCGACGCCAACGCCTCATGGAATATCCGACATTGACCTTGCGCTGCCTCTGGACCGTCTTGTT TTGTCTCCTCGACCTGCACACGATGCTGCGGCTGCGGCGCCATCCAATTCTGAAGCCAGTCAAGCCAGCTACTAT GCTTCGGAAGCGACTCGAGACTTTTGCGCCGCACACGGCTACCAAGTATTTGTACCGCCATCGCCGCCGAGTCGT CGCAAAGTCTTTGATCTCTTCATGGCCAACTCTGAGCTGGATCTTATTGAGATTCGATTAGCCACTCTCTACAAC CACGTCGACTACTTTGTCATTGTCGAATCATTGCGTACCTTTCAGGGCCGGCCCAAGCCCTTGGTTGTGCGCGAC AACTGGCAGCGCTTCAGCAAGTTCCACGACAAAATCATCTACCATGTGCTCGAGTTCCCAGCCGGCTTTGCTCCG CGTCTCACATGGGACTACGAGGACCTGCAGCGCGACGCCTCGCTCGAGCAAGTGCTGCCTCGACTAACGGGCTCC CAAGCACCAGTCGAGGGCGATGTTATAATTGTTGCCGATGTCGACGAGATTCCTCGCCCGGCCGCGCTGCTCGTC CTGCGCAGCTGTATCTTTCCGCGCCGCCTGACGCTTTCGTCGCGATTTTACTACTACTCGTATCAATTCCGACAC ATGGGCGCCGACTGGCCACATCCGCAGGCCACGATTTGGCAGGGCAGCGACAAGACGATTCGGCCAACCAAGCTG CGTGCTTCGGATGGCGGGTCAACCATGGGCCGCATTCTCGAGTCGGGAACGCTGCAAAACGCTGGCTGGCACTGC AGCAGCTGCTTTGCCACGATTGGCGACTTTCTCAACAAGATGGCGTCCTTTTCCCACATGTGGATGAATGAGCCC AAGTATCGCGACGTGCACCGCATTGCCGCGGCCGTGCGCCAAGGCCGAGATGTCTGGGGCCGCAGACAAGACGTC TTTGAGCGCATCGACAACAATGAGGATGTCCCGCCGCCGCTGCTGACAGAGTCGGGCCGCAGGCGCTTTGGCTAC ATGTTGAGCCGCGATGGCGAGAGCGCTGGCTTCTCAGACTATCCGTAG |
| Transcript | >OphauB2|6058 ATGGTCTTGAGGCCATTTGCGGCCATTGTCCTCTTTGTGGCCTTGGCCTGGCTCGCCTTCAATTTCGGCCGCGGC CTGGGCCACTTGTCGACGCCAACGCCTCATGGAATATCCGACATTGACCTTGCGCTGCCTCTGGACCGTCTTGTT TTGTCTCCTCGACCTGCACACGATGCTGCGGCTGCGGCGCCATCCAATTCTGAAGCCAGTCAAGCCAGCTACTAT GCTTCGGAAGCGACTCGAGACTTTTGCGCCGCACACGGCTACCAAGTATTTGTACCGCCATCGCCGCCGAGTCGT CGCAAAGTCTTTGATCTCTTCATGGCCAACTCTGAGCTGGATCTTATTGAGATTCGATTAGCCACTCTCTACAAC CACGTCGACTACTTTGTCATTGTCGAATCATTGCGTACCTTTCAGGGCCGGCCCAAGCCCTTGGTTGTGCGCGAC AACTGGCAGCGCTTCAGCAAGTTCCACGACAAAATCATCTACCATGTGCTCGAGTTCCCAGCCGGCTTTGCTCCG CGTCTCACATGGGACTACGAGGACCTGCAGCGCGACGCCTCGCTCGAGCAAGTGCTGCCTCGACTAACGGGCTCC CAAGCACCAGTCGAGGGCGATGTTATAATTGTTGCCGATGTCGACGAGATTCCTCGCCCGGCCGCGCTGCTCGTC CTGCGCAGCTGTATCTTTCCGCGCCGCCTGACGCTTTCGTCGCGATTTTACTACTACTCGTATCAATTCCGACAC ATGGGCGCCGACTGGCCACATCCGCAGGCCACGATTTGGCAGGGCAGCGACAAGACGATTCGGCCAACCAAGCTG CGTGCTTCGGATGGCGGGTCAACCATGGGCCGCATTCTCGAGTCGGGAACGCTGCAAAACGCTGGCTGGCACTGC AGCAGCTGCTTTGCCACGATTGGCGACTTTCTCAACAAGATGGCGTCCTTTTCCCACATGTGGATGAATGAGCCC AAGTATCGCGACGTGCACCGCATTGCCGCGGCCGTGCGCCAAGGCCGAGATGTCTGGGGCCGCAGACAAGACGTC TTTGAGCGCATCGACAACAATGAGGATGTCCCGCCGCCGCTGCTGACAGAGTCGGGCCGCAGGCGCTTTGGCTAC ATGTTGAGCCGCGATGGCGAGAGCGCTGGCTTCTCAGACTATCCGTAG |
| Gene | >OphauB2|6058 ATGGTCTTGAGGCCATTTGCGGCCATTGTCCTCTTTGTGGCCTTGGCCTGGCTCGCCTTCAATTTCGGCCGCGGC CTGGGCCACTTGTCGACGCCAACGCCTCATGGAATATCCGACATTGACCTTGCGCTGCCTCTGGACCGTCTTGTT TTGTCTCCTCGACCTGCACACGATGCTGCGGCTGCGGCGCCATCCAATTCTGAAGCCAGTCAAGCCAGCTACTAT GCTTCGGAAGCGACTCGAGACTTTTGCGCCGCACACGGCTACCAAGTATTTGTACCGCCATCGCCGCCGAGTCGT CGCAAAGTCTTTGATCTCTTCATGGCCAACTCTGAGCTGGATCTTATTGAGATTCGATTAGCCACTCTCTACAAC CACGTCGACTACTTTGTCATTGTCGAATCATTGCGTACCTTTCAGGGCCGGCCCAAGCCCTTGGTTGTGCGCGAC AACTGGCAGCGCTTCAGCAAGTTCCACGACAAAATCATCTACCATGTGCTCGAGTTCCCAGCCGGCTTTGCTCCG CGTCTCACATGGGACTACGAGGACCTGCAGCGCGACGCCTCGCTCGAGCAAGTGCTGCCTCGACTAACGGGCTCC CAAGCACCAGTCGAGGGCGATGTTATAATTGTTGCCGATGTCGACGAGATTCCTCGCCCGGCCGCGCTGCTCGTC CTGCGCAGCTGTATCTTTCCGCGCCGCCTGACGCTTTCGTCGCGATTTTACTACTACTCGTATCAATTCCGACAC ATGGGCGCCGACTGGCCACATCCGCAGGCCACGATTTGGCAGGGCAGCGACAAGACGATTCGGCCAACCAAGCTG CGTGCTTCGGATGGCGGGTCAACCATGGGCCGCATTCTCGAGTCGGGAACGCTGCAAAACGCTGGCTGGCACTGC AGCAGCTGCTTTGCCACGATTGGCGACTTTCTCAACAAGATGGCGTCCTTTTCCCACATGTGGATGAATGAGCCC AAGTATCGCGACGTGCACCGCATTGCCGCGGCCGTGCGCCAAGGCCGAGATGTCTGGGGCCGCAGACAAGACGTC TTTGAGCGCATCGACAACAATGAGGATGTCCCGCCGCCGCTGCTGACAGAGTCGGGCCGCAGGCGCTTTGGCTAC ATGTTGAGCCGCGATGGCGAGAGCGCTGGCTTCTCAGACTATCCGTAG |