Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|5949
Gene name
LocationContig_5:253313..254725
Strand+
Gene length (bp)1412
Transcript length (bp)1359
Coding sequence length (bp)1359
Protein length (aa) 453

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10332 DUF2418 Protein of unknown function (DUF2418) 2.4E-34 164 267

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P87236|MU154_SCHPO Meiotically up-regulated gene 154 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug154 PE=1 SV=1 1 300 8.0E-22

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 34 0.5

Transmembrane Domains

Domain # Start End Length
1 41 60 19
2 80 102 22
3 176 198 22
4 208 230 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|5949
MPRLVRRRPLHKRILALLNPVDYLLLLSEDIEAREWDSKQVGSQLGLLLNFVFLVGRANLKRSTIYRSDDIFGDS
EETTWFAFILYPLLCILAAFSVTNAIYTFARKRQYRLFEANIEVQPSTPSARRVKVQSPPFSSSPLRYIADLMTP
ESAESRAHPDRDQDVWQIAVWDPPPVALQLVCFFSPLHVLVYLLFLPVAPLDARPSVTVFNALVIEVLLSAQLLL
LCSQFSQQAKDTAIIQKEVMHEYDTKFVHPLIYPTVRDVGTQKSQHQPVMAREFVELGTPTTLIRRTLVSRGTSH
VGESRDMMPTAKGSSSTMNPHMSTPTGASLRSSALRNSLPAPHTPRAAQATDGAVPPTQSHDFGGYMGVYTHNKS
PLKKATSLSSFIDAEVASPRNSREMAAWEQRRRELPSSPTKKPDPRQVLGAGVNSSPHPFANMGKHRPQYERYPS
RR*
Coding >OphauB2|5949
ATGCCTCGATTAGTGCGGCGTAGACCGCTTCATAAGCGCATCTTGGCTTTGCTCAACCCCGTGGACTATCTGCTC
CTGCTCTCGGAAGACATAGAGGCCAGAGAATGGGACTCGAAGCAAGTTGGCTCGCAGCTTGGCCTTTTGCTCAAC
TTTGTTTTCCTTGTTGGCCGCGCCAATCTCAAGCGAAGCACCATCTATCGATCCGACGATATTTTTGGCGACAGT
GAAGAAACAACATGGTTTGCCTTTATTCTCTACCCTCTCCTTTGCATCTTGGCGGCCTTTTCGGTAACAAATGCC
ATTTACACATTTGCGCGGAAAAGGCAATATCGATTGTTCGAGGCCAACATAGAGGTGCAGCCGTCGACACCATCA
GCGCGCCGCGTCAAGGTGCAGTCGCCGCCTTTTTCGTCATCGCCGCTCCGCTACATTGCCGATCTAATGACACCC
GAATCGGCTGAATCGCGGGCACATCCAGATAGAGACCAGGACGTGTGGCAGATAGCAGTATGGGATCCGCCTCCG
GTGGCGCTACAGCTGGTGTGCTTCTTTAGCCCGCTACATGTCCTTGTCTACCTGCTCTTCCTGCCAGTCGCGCCG
CTCGATGCACGGCCCAGCGTGACGGTTTTCAACGCGTTGGTGATAGAGGTGTTGCTGTCAGCTCAGTTGCTCCTT
TTGTGCTCGCAATTCTCGCAGCAGGCCAAGGATACTGCCATAATACAGAAAGAGGTGATGCACGAATACGACACC
AAGTTTGTTCATCCTCTCATCTATCCCACGGTCCGAGACGTGGGCACGCAAAAATCGCAGCACCAGCCGGTAATG
GCGCGCGAGTTCGTCGAGCTGGGAACGCCAACAACTTTGATTCGACGCACCCTTGTGTCCCGTGGAACTTCACAC
GTTGGCGAGTCTCGTGACATGATGCCTACTGCCAAGGGCAGCAGCAGTACCATGAACCCTCACATGTCGACGCCC
ACTGGCGCCAGTCTACGCAGCTCGGCTTTACGCAACAGTTTGCCCGCACCACACACTCCAAGGGCCGCGCAGGCC
ACTGATGGGGCTGTGCCGCCGACGCAGAGTCATGATTTTGGGGGTTACATGGGCGTCTATACGCACAACAAGTCT
CCGCTCAAAAAGGCAACCAGCTTGAGCAGCTTTATTGATGCCGAGGTAGCCTCGCCGAGGAACTCGAGAGAAATG
GCAGCTTGGGAGCAGCGGCGGCGAGAGCTGCCAAGCAGTCCGACCAAGAAGCCGGACCCCAGGCAGGTGCTTGGC
GCTGGTGTCAACAGCTCGCCACACCCATTCGCCAACATGGGCAAGCACCGGCCGCAATACGAAAGATATCCTTCG
CGACGGTAG
Transcript >OphauB2|5949
ATGCCTCGATTAGTGCGGCGTAGACCGCTTCATAAGCGCATCTTGGCTTTGCTCAACCCCGTGGACTATCTGCTC
CTGCTCTCGGAAGACATAGAGGCCAGAGAATGGGACTCGAAGCAAGTTGGCTCGCAGCTTGGCCTTTTGCTCAAC
TTTGTTTTCCTTGTTGGCCGCGCCAATCTCAAGCGAAGCACCATCTATCGATCCGACGATATTTTTGGCGACAGT
GAAGAAACAACATGGTTTGCCTTTATTCTCTACCCTCTCCTTTGCATCTTGGCGGCCTTTTCGGTAACAAATGCC
ATTTACACATTTGCGCGGAAAAGGCAATATCGATTGTTCGAGGCCAACATAGAGGTGCAGCCGTCGACACCATCA
GCGCGCCGCGTCAAGGTGCAGTCGCCGCCTTTTTCGTCATCGCCGCTCCGCTACATTGCCGATCTAATGACACCC
GAATCGGCTGAATCGCGGGCACATCCAGATAGAGACCAGGACGTGTGGCAGATAGCAGTATGGGATCCGCCTCCG
GTGGCGCTACAGCTGGTGTGCTTCTTTAGCCCGCTACATGTCCTTGTCTACCTGCTCTTCCTGCCAGTCGCGCCG
CTCGATGCACGGCCCAGCGTGACGGTTTTCAACGCGTTGGTGATAGAGGTGTTGCTGTCAGCTCAGTTGCTCCTT
TTGTGCTCGCAATTCTCGCAGCAGGCCAAGGATACTGCCATAATACAGAAAGAGGTGATGCACGAATACGACACC
AAGTTTGTTCATCCTCTCATCTATCCCACGGTCCGAGACGTGGGCACGCAAAAATCGCAGCACCAGCCGGTAATG
GCGCGCGAGTTCGTCGAGCTGGGAACGCCAACAACTTTGATTCGACGCACCCTTGTGTCCCGTGGAACTTCACAC
GTTGGCGAGTCTCGTGACATGATGCCTACTGCCAAGGGCAGCAGCAGTACCATGAACCCTCACATGTCGACGCCC
ACTGGCGCCAGTCTACGCAGCTCGGCTTTACGCAACAGTTTGCCCGCACCACACACTCCAAGGGCCGCGCAGGCC
ACTGATGGGGCTGTGCCGCCGACGCAGAGTCATGATTTTGGGGGTTACATGGGCGTCTATACGCACAACAAGTCT
CCGCTCAAAAAGGCAACCAGCTTGAGCAGCTTTATTGATGCCGAGGTAGCCTCGCCGAGGAACTCGAGAGAAATG
GCAGCTTGGGAGCAGCGGCGGCGAGAGCTGCCAAGCAGTCCGACCAAGAAGCCGGACCCCAGGCAGGTGCTTGGC
GCTGGTGTCAACAGCTCGCCACACCCATTCGCCAACATGGGCAAGCACCGGCCGCAATACGAAAGATATCCTTCG
CGACGGTAG
Gene >OphauB2|5949
ATGCCTCGATTAGTGCGGCGTAGACCGCTTCATAAGCGCATCTTGGCTTTGCTCAACCCCGTGGACTATCTGCTC
CTGCTCTCGGAAGACATAGAGGCCAGAGAATGGGACTCGAAGCAAGTTGGCTCGCAGCTTGGCCTTTTGCTCAAC
TTTGTTTTCCTTGTTGGCCGCGCCAATCTCAAGCGAAGCACCATCTATCGATCCGACGATATTTTTGGCGACAGT
GAAGAAACAACATGGTTTGCCTTTATTGTGAGTAGTAGGCGTTTCACCTGGAGAGCTCCGGCCAGCTGATGAAGC
TACAGCTCTACCCTCTCCTTTGCATCTTGGCGGCCTTTTCGGTAACAAATGCCATTTACACATTTGCGCGGAAAA
GGCAATATCGATTGTTCGAGGCCAACATAGAGGTGCAGCCGTCGACACCATCAGCGCGCCGCGTCAAGGTGCAGT
CGCCGCCTTTTTCGTCATCGCCGCTCCGCTACATTGCCGATCTAATGACACCCGAATCGGCTGAATCGCGGGCAC
ATCCAGATAGAGACCAGGACGTGTGGCAGATAGCAGTATGGGATCCGCCTCCGGTGGCGCTACAGCTGGTGTGCT
TCTTTAGCCCGCTACATGTCCTTGTCTACCTGCTCTTCCTGCCAGTCGCGCCGCTCGATGCACGGCCCAGCGTGA
CGGTTTTCAACGCGTTGGTGATAGAGGTGTTGCTGTCAGCTCAGTTGCTCCTTTTGTGCTCGCAATTCTCGCAGC
AGGCCAAGGATACTGCCATAATACAGAAAGAGGTGATGCACGAATACGACACCAAGTTTGTTCATCCTCTCATCT
ATCCCACGGTCCGAGACGTGGGCACGCAAAAATCGCAGCACCAGCCGGTAATGGCGCGCGAGTTCGTCGAGCTGG
GAACGCCAACAACTTTGATTCGACGCACCCTTGTGTCCCGTGGAACTTCACACGTTGGCGAGTCTCGTGACATGA
TGCCTACTGCCAAGGGCAGCAGCAGTACCATGAACCCTCACATGTCGACGCCCACTGGCGCCAGTCTACGCAGCT
CGGCTTTACGCAACAGTTTGCCCGCACCACACACTCCAAGGGCCGCGCAGGCCACTGATGGGGCTGTGCCGCCGA
CGCAGAGTCATGATTTTGGGGGTTACATGGGCGTCTATACGCACAACAAGTCTCCGCTCAAAAAGGCAACCAGCT
TGAGCAGCTTTATTGATGCCGAGGTAGCCTCGCCGAGGAACTCGAGAGAAATGGCAGCTTGGGAGCAGCGGCGGC
GAGAGCTGCCAAGCAGTCCGACCAAGAAGCCGGACCCCAGGCAGGTGCTTGGCGCTGGTGTCAACAGCTCGCCAC
ACCCATTCGCCAACATGGGCAAGCACCGGCCGCAATACGAAAGATATCCTTCGCGACGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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