Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|5934
Gene name
LocationContig_5:202611..205087
Strand-
Gene length (bp)2476
Transcript length (bp)2064
Coding sequence length (bp)2064
Protein length (aa) 688

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.5E-05 318 379
PF01480 PWI PWI domain 2.6E-07 12 76

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9USP9|YHP4_SCHPO Uncharacterized RNA-binding protein C902.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC902.04 PE=1 SV=1 312 648 2.0E-34
sp|Q9USP9|YHP4_SCHPO Uncharacterized RNA-binding protein C902.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC902.04 PE=1 SV=1 1 81 7.0E-15
sp|Q5T8P6|RBM26_HUMAN RNA-binding protein 26 OS=Homo sapiens GN=RBM26 PE=1 SV=3 12 96 3.0E-10
sp|Q6NZN0|RBM26_MOUSE RNA-binding protein 26 OS=Mus musculus GN=Rbm26 PE=1 SV=2 12 96 3.0E-10
sp|Q9P2N5|RBM27_HUMAN RNA-binding protein 27 OS=Homo sapiens GN=RBM27 PE=1 SV=2 12 92 8.0E-10
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9USP9|YHP4_SCHPO Uncharacterized RNA-binding protein C902.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC902.04 PE=1 SV=1 312 648 2.0E-34
sp|Q9USP9|YHP4_SCHPO Uncharacterized RNA-binding protein C902.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC902.04 PE=1 SV=1 1 81 7.0E-15
sp|Q5T8P6|RBM26_HUMAN RNA-binding protein 26 OS=Homo sapiens GN=RBM26 PE=1 SV=3 12 96 3.0E-10
sp|Q6NZN0|RBM26_MOUSE RNA-binding protein 26 OS=Mus musculus GN=Rbm26 PE=1 SV=2 12 96 3.0E-10
sp|Q9P2N5|RBM27_HUMAN RNA-binding protein 27 OS=Homo sapiens GN=RBM27 PE=1 SV=2 12 92 8.0E-10
sp|Q5SFM8|RBM27_MOUSE RNA-binding protein 27 OS=Mus musculus GN=Rbm27 PE=1 SV=3 12 92 9.0E-10
sp|Q2T9I5|RBM26_XENLA RNA-binding protein 26 OS=Xenopus laevis GN=rbm26 PE=2 SV=2 12 82 1.0E-09
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0006397 mRNA processing Yes
GO:0090304 nucleic acid metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0008150 biological_process No
GO:0005488 binding No
GO:0003674 molecular_function No
GO:0006396 RNA processing No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0071704 organic substance metabolic process No
GO:0044237 cellular metabolic process No
GO:0008152 metabolic process No
GO:0009987 cellular process No
GO:0044238 primary metabolic process No
GO:0003676 nucleic acid binding No
GO:0046483 heterocycle metabolic process No
GO:0016071 mRNA metabolic process No
GO:0016070 RNA metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 27 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|5934
MVLFPEEHAGLLKEWIVGRIENTSDADSDVLAEYVIALLRHDGDEPTIRALCEQEIPDFLDEDPKAFLDDVFEAI
KNKAYLPAQRPPPESAPSHQLPPTLAQPGAVVTKKRAFDDQADGPGPVQQGGPQPPRSNKQARRGGRRPVDDVAN
LHAGRAAINLPLPPQPPPGMPPFDPSNPMDTIMQLQAMGIPFPAFPTFPQPSFDARTPRNQARKRGRCRDYDTKG
YCSRGSTCMYDHGQESIYVPPTLPQTEEYDPHNAAMGITGALNQSPFAFAFNPDLNRGRGRKSRASQRGGRKGGA
RAPFSADGPVLDRSKSTIVVENIPEESFSDQQVRGFFSQFGSITDVNLQPYKHLAVVKFDSWAAANDAYRSPKVI
FDNRFVKVFWYKDESDAQTVPGTPQKGTSGVDSSAPWTQEDGGADEFRKKQEEAQKQHEEREAKKVELERQRQLL
EQQQQELVAKHQAEKERLKAKLTNKGQDDSTASSDTDFLRAQLAALEQEAMRLGIDPNAADDGSGHRGGSRGRGG
YRGRSGRGRGRGTLRGHEARHAAYAQYSIDNRPRKVALSGADFTPAAMDEKLRHFLLNLGDFESVETGPVVTHVT
FPDRKTAEKFYYSLHGKQLPGVEAKLEISWANAAPLSKRSSDEGDDDAQLGRDDDDVGRAQGQEQPQRHVDMDYE
AGDDEGWADGIQ*
Coding >OphauB2|5934
ATGGTGCTGTTTCCAGAAGAGCACGCGGGCCTGCTCAAGGAATGGATAGTGGGCAGGATTGAAAACACGTCAGAT
GCCGACTCAGATGTGCTGGCCGAGTACGTGATTGCCCTGCTGCGACACGATGGCGACGAGCCGACAATTCGGGCT
CTCTGCGAACAAGAGATTCCAGATTTTCTCGACGAAGACCCCAAGGCGTTTCTCGACGATGTCTTTGAGGCAATC
AAGAACAAGGCCTATCTCCCGGCACAGCGACCGCCGCCAGAGAGCGCTCCGTCGCATCAGCTTCCCCCCACACTG
GCACAGCCTGGTGCCGTCGTGACCAAGAAGCGAGCCTTTGACGACCAAGCCGACGGCCCAGGCCCGGTGCAGCAA
GGCGGCCCTCAGCCTCCTCGATCAAACAAACAAGCGCGACGCGGTGGCCGACGGCCCGTGGATGATGTTGCCAAT
CTTCATGCTGGCCGCGCTGCTATAAATCTTCCCTTGCCTCCCCAGCCTCCGCCTGGCATGCCGCCATTTGATCCT
AGCAATCCCATGGACACCATTATGCAGCTGCAAGCCATGGGGATTCCATTTCCCGCTTTTCCAACTTTTCCTCAG
CCGAGCTTTGACGCGCGCACTCCCAGAAATCAGGCAAGAAAGCGAGGACGTTGCCGCGACTATGATACCAAGGGA
TATTGTTCTCGGGGCAGCACCTGCATGTATGACCACGGACAAGAGTCCATCTACGTGCCTCCTACTCTACCGCAA
ACTGAAGAATATGATCCTCACAACGCGGCCATGGGTATAACTGGAGCCCTAAACCAATCTCCCTTTGCCTTTGCC
TTCAATCCCGACCTAAATCGTGGACGAGGTCGGAAAAGTCGAGCTTCTCAGCGCGGCGGACGCAAAGGAGGTGCG
CGTGCTCCTTTTTCAGCGGATGGCCCAGTATTGGATCGCTCCAAAAGCACAATCGTCGTTGAGAATATTCCCGAG
GAAAGCTTTAGCGACCAACAAGTGCGCGGCTTCTTCTCCCAATTTGGCAGCATCACCGACGTCAATCTACAGCCC
TACAAGCATCTGGCGGTTGTCAAGTTTGACAGCTGGGCTGCGGCAAACGACGCCTATCGCTCGCCCAAGGTCATT
TTTGATAACCGGTTTGTCAAGGTGTTTTGGTACAAGGATGAATCAGATGCACAGACTGTGCCCGGCACGCCTCAA
AAGGGAACCAGTGGGGTGGATTCATCTGCTCCTTGGACTCAAGAGGATGGCGGAGCAGACGAGTTTCGAAAAAAG
CAGGAAGAAGCCCAGAAGCAGCACGAAGAGCGGGAAGCCAAAAAGGTGGAGCTGGAGCGACAGCGACAGCTCCTG
GAGCAACAGCAGCAAGAGCTCGTGGCAAAACACCAGGCGGAAAAGGAGCGATTAAAGGCCAAGTTGACCAACAAG
GGCCAAGACGACAGTACAGCCTCGTCGGACACCGACTTTTTGCGCGCACAACTGGCCGCTCTGGAGCAAGAGGCG
ATGCGGCTAGGCATTGATCCCAACGCTGCGGATGATGGATCCGGCCATCGTGGAGGCTCCAGAGGGCGGGGTGGC
TACCGAGGCAGAAGCGGGCGAGGGCGAGGCCGCGGCACCCTGCGAGGCCACGAGGCACGGCATGCTGCCTATGCG
CAGTATTCGATTGACAACCGGCCGCGCAAAGTTGCTCTCAGCGGAGCAGACTTTACTCCCGCAGCCATGGACGAG
AAGCTGCGCCACTTCCTCTTGAATCTGGGCGACTTTGAATCCGTCGAGACGGGCCCTGTGGTTACGCACGTGACA
TTTCCAGACCGCAAAACGGCTGAAAAGTTTTACTATAGTCTCCACGGCAAGCAACTCCCCGGCGTCGAGGCCAAG
CTCGAAATATCGTGGGCCAATGCGGCGCCGCTGTCGAAGCGGTCCAGCGACGAGGGCGACGACGATGCTCAACTG
GGCCGCGACGACGACGACGTGGGCCGGGCTCAGGGCCAAGAGCAGCCCCAGCGCCATGTTGACATGGATTACGAG
GCTGGTGATGACGAAGGCTGGGCAGACGGCATACAGTAA
Transcript >OphauB2|5934
ATGGTGCTGTTTCCAGAAGAGCACGCGGGCCTGCTCAAGGAATGGATAGTGGGCAGGATTGAAAACACGTCAGAT
GCCGACTCAGATGTGCTGGCCGAGTACGTGATTGCCCTGCTGCGACACGATGGCGACGAGCCGACAATTCGGGCT
CTCTGCGAACAAGAGATTCCAGATTTTCTCGACGAAGACCCCAAGGCGTTTCTCGACGATGTCTTTGAGGCAATC
AAGAACAAGGCCTATCTCCCGGCACAGCGACCGCCGCCAGAGAGCGCTCCGTCGCATCAGCTTCCCCCCACACTG
GCACAGCCTGGTGCCGTCGTGACCAAGAAGCGAGCCTTTGACGACCAAGCCGACGGCCCAGGCCCGGTGCAGCAA
GGCGGCCCTCAGCCTCCTCGATCAAACAAACAAGCGCGACGCGGTGGCCGACGGCCCGTGGATGATGTTGCCAAT
CTTCATGCTGGCCGCGCTGCTATAAATCTTCCCTTGCCTCCCCAGCCTCCGCCTGGCATGCCGCCATTTGATCCT
AGCAATCCCATGGACACCATTATGCAGCTGCAAGCCATGGGGATTCCATTTCCCGCTTTTCCAACTTTTCCTCAG
CCGAGCTTTGACGCGCGCACTCCCAGAAATCAGGCAAGAAAGCGAGGACGTTGCCGCGACTATGATACCAAGGGA
TATTGTTCTCGGGGCAGCACCTGCATGTATGACCACGGACAAGAGTCCATCTACGTGCCTCCTACTCTACCGCAA
ACTGAAGAATATGATCCTCACAACGCGGCCATGGGTATAACTGGAGCCCTAAACCAATCTCCCTTTGCCTTTGCC
TTCAATCCCGACCTAAATCGTGGACGAGGTCGGAAAAGTCGAGCTTCTCAGCGCGGCGGACGCAAAGGAGGTGCG
CGTGCTCCTTTTTCAGCGGATGGCCCAGTATTGGATCGCTCCAAAAGCACAATCGTCGTTGAGAATATTCCCGAG
GAAAGCTTTAGCGACCAACAAGTGCGCGGCTTCTTCTCCCAATTTGGCAGCATCACCGACGTCAATCTACAGCCC
TACAAGCATCTGGCGGTTGTCAAGTTTGACAGCTGGGCTGCGGCAAACGACGCCTATCGCTCGCCCAAGGTCATT
TTTGATAACCGGTTTGTCAAGGTGTTTTGGTACAAGGATGAATCAGATGCACAGACTGTGCCCGGCACGCCTCAA
AAGGGAACCAGTGGGGTGGATTCATCTGCTCCTTGGACTCAAGAGGATGGCGGAGCAGACGAGTTTCGAAAAAAG
CAGGAAGAAGCCCAGAAGCAGCACGAAGAGCGGGAAGCCAAAAAGGTGGAGCTGGAGCGACAGCGACAGCTCCTG
GAGCAACAGCAGCAAGAGCTCGTGGCAAAACACCAGGCGGAAAAGGAGCGATTAAAGGCCAAGTTGACCAACAAG
GGCCAAGACGACAGTACAGCCTCGTCGGACACCGACTTTTTGCGCGCACAACTGGCCGCTCTGGAGCAAGAGGCG
ATGCGGCTAGGCATTGATCCCAACGCTGCGGATGATGGATCCGGCCATCGTGGAGGCTCCAGAGGGCGGGGTGGC
TACCGAGGCAGAAGCGGGCGAGGGCGAGGCCGCGGCACCCTGCGAGGCCACGAGGCACGGCATGCTGCCTATGCG
CAGTATTCGATTGACAACCGGCCGCGCAAAGTTGCTCTCAGCGGAGCAGACTTTACTCCCGCAGCCATGGACGAG
AAGCTGCGCCACTTCCTCTTGAATCTGGGCGACTTTGAATCCGTCGAGACGGGCCCTGTGGTTACGCACGTGACA
TTTCCAGACCGCAAAACGGCTGAAAAGTTTTACTATAGTCTCCACGGCAAGCAACTCCCCGGCGTCGAGGCCAAG
CTCGAAATATCGTGGGCCAATGCGGCGCCGCTGTCGAAGCGGTCCAGCGACGAGGGCGACGACGATGCTCAACTG
GGCCGCGACGACGACGACGTGGGCCGGGCTCAGGGCCAAGAGCAGCCCCAGCGCCATGTTGACATGGATTACGAG
GCTGGTGATGACGAAGGCTGGGCAGACGGCATACAGTAA
Gene >OphauB2|5934
ATGGTGCTGTTTCCAGAAGAGCACGCGGGCCTGCTCAAGGAATGGATAGTGGGCAGGATTGAAAACACGTGCGTA
TCGAGACGCGGCGCGACGCGGCTTGCAGCCCACGAGGCCAGGAAGCTGACGAGAAGAACAACAGGTCAGATGCCG
ACTCAGATGTGCTGGCCGAGTACGTGATTGCCCTGCTGCGACACGATGGCGACGAGCCGACAATTCGGGCTCTCT
GCGAACAAGAGATTCCAGATTTTCTCGACGAAGGTACTTTTGTCCCTGTCAAGTCGGAGCCCGAGGCGACTCCAG
CACAAGGTCTGGCAGAAACTAAATGCGGCGACAGACCCCAAGGCGTTTCTCGACGATGTCTTTGAGGCAATCAAG
AACAAGGCCTATCTCCCGGCACAGCGACCGCCGCCAGAGAGCGCTCCGTCGCATCAGCTTCCCCCCACACTGGCA
CAGCCTGGTGCCGTCGTGACCAAGAAGCGAGCCTTTGACGACCAAGCCGACGGCCCAGGCCCGGTGCAGCAAGGC
GGCCCTCAGCCTCCTCGATCAAACAAACAAGCGCGACGCGGTGGCCGACGGCCCGTGGATGATGTTGCCAATCTT
CATGCTGGCCGCGCTGCTATAAATCTTCCCTTGCCTCCCCAGCCTCCGCCTGGCATGCCGCCATTTGATCCTAGC
AATCCCATGGACACCATTATGCAGCTGCAAGCCATGGGGATTCCATTTCCCGCTTTTCCAACTTTTCCTCAGCCG
AGCTTTGACGCGCGCACTCCCAGAAATCAGGCAAGAAAGCGAGGACGTTGCCGCGACTATGATACCAAGGGATAT
TGTTCTCGGGGCAGCACCTGCATGTATGACCACGGACAAGAGTCCATCTACGTGCCTCCTACTCTACCGCAAACT
GAAGGTCAGTTTACCACTCTCTCAACCGCGACTTGCATGTGCTGCCTGCACAATGATGAAGACCAAATGCGCGAG
CCGCTCGGCCATGACGGCTACAAACGATAACTTCTGATTGCAATGACTTGTTCAGACTCCTTTTTCCTCCATCAT
GACTTTGCTGGCTGCACAAGACTCAAGACTAACTAGATTCTAGAATATGATCCTCACAACGCGGCCATGGGTATA
ACTGGAGCCCTAAACCAATCTCCCTTTGCCTTTGCCTTCAATCCCGACCTAAATCGTGGACGAGGTCGGAAAAGT
CGAGCTTCTCAGCGCGGCGGACGCAAAGGAGGTGCGCGTGCTCCTTTTTCAGCGGATGGCCCAGTATTGGATCGC
TCCAAAAGCACAATCGTCGTTGAGAATATTCCCGAGGAAAGCTTTAGCGACCAACAAGTGCGCGGCTTCTTCTCC
CAATTTGGCAGCATCACCGACGTCAATCTACAGCCCTACAAGCATCTGGCGGTTGTCAAGTTTGACAGCTGGGCT
GCGGCAAACGACGCCTATCGCTCGCCCAAGGTCATTTTTGATAACCGGTTTGTCAAGGTGTTTTGGTACAAGGAT
GAATCAGATGCACAGACTGTGCCCGGCACGCCTCAAAAGGGAACCAGTGGGGTGGATTCATCTGCTCCTTGGACT
CAAGAGGATGGCGGAGCAGACGAGTTTCGAAAAAAGCAGGAAGAAGCCCAGAAGCAGCACGAAGAGCGGGAAGCC
AAAAAGGTGGAGCTGGAGCGACAGCGACAGCTCCTGGAGCAACAGCAGCAAGAGCTCGTGGCAAAACACCAGGCG
GAAAAGGAGCGATTAAAGGCCAAGTTGACCAACAAGGGCCAAGACGACAGTACAGCCTCGTCGGACACCGACTTT
TTGCGCGCACAACTGGCCGCTCTGGAGCAAGAGGCGATGCGGCTAGGCATTGATCCCAACGCTGCGGATGATGGA
TCCGGCCATCGTGGAGGCTCCAGAGGGCGGGGTGGCTACCGAGGCAGAAGCGGGCGAGGGCGAGGCCGCGGCACC
CTGCGAGGCCACGAGGCACGGCATGCTGCCTATGCGCAGTATTCGATTGACAACCGGCCGCGCAAAGTTGCTCTC
AGCGGAGCAGACTTTACTCCCGCAGCCATGGACGAGAAGCTGCGCCACTTCCTCTTGGTAAGTTTGACAAGCCCC
TTGGACCTGATGTGAAGAGCAGGCCCCCAAGCTAATTCACGAGGCTTGCCTGTCCTAGAATCTGGGCGACTTTGA
ATCCGTCGAGACGGGCCCTGTGGTTACGCACGTGACATTTCCAGACCGCAAAACGGCTGAAAAGTTTTACTATAG
TCTCCACGGCAAGCAACTCCCCGGCGTCGAGGCCAAGCTCGAAATATCGTGGGCCAATGCGGCGCCGCTGTCGAA
GCGGTCCAGCGACGAGGGCGACGACGATGCTCAACTGGGCCGCGACGACGACGACGTGGGCCGGGCTCAGGGCCA
AGAGCAGCCCCAGCGCCATGTTGACATGGATTACGAGGCTGGTGATGACGAAGGCTGGGCAGACGGCATACAGTA
A

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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