© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|5918 |
| Gene name | |
| Location | Contig_5:175369..177857 |
| Strand | - |
| Gene length (bp) | 2488 |
| Transcript length (bp) | 2310 |
| Coding sequence length (bp) | 2310 |
| Protein length (aa) | 770 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10405 | BHD_3 | Rad4 beta-hairpin domain 3 | 8.4E-26 | 519 | 589 |
| PF10403 | BHD_1 | Rad4 beta-hairpin domain 1 | 1.4E-20 | 389 | 446 |
| PF03835 | Rad4 | Rad4 transglutaminase-like domain | 9.1E-14 | 237 | 377 |
| PF10404 | BHD_2 | Rad4 beta-hairpin domain 2 | 1.9E-14 | 450 | 512 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87235|RHP42_SCHPO | DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp42 PE=3 SV=1 | 76 | 634 | 5.0E-80 |
| sp|Q10445|RHP41_SCHPO | DNA repair protein rhp41 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp41 PE=3 SV=1 | 88 | 634 | 5.0E-45 |
| sp|Q24595|XPC_DROME | DNA repair protein complementing XP-C cells homolog OS=Drosophila melanogaster GN=Xpc PE=1 SV=2 | 349 | 634 | 9.0E-35 |
| sp|Q01831|XPC_HUMAN | DNA repair protein complementing XP-C cells OS=Homo sapiens GN=XPC PE=1 SV=4 | 394 | 689 | 2.0E-27 |
| sp|P51612|XPC_MOUSE | DNA repair protein complementing XP-C cells homolog OS=Mus musculus GN=Xpc PE=1 SV=2 | 384 | 634 | 9.0E-27 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87235|RHP42_SCHPO | DNA repair protein rhp42 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp42 PE=3 SV=1 | 76 | 634 | 5.0E-80 |
| sp|Q10445|RHP41_SCHPO | DNA repair protein rhp41 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp41 PE=3 SV=1 | 88 | 634 | 5.0E-45 |
| sp|Q24595|XPC_DROME | DNA repair protein complementing XP-C cells homolog OS=Drosophila melanogaster GN=Xpc PE=1 SV=2 | 349 | 634 | 9.0E-35 |
| sp|Q01831|XPC_HUMAN | DNA repair protein complementing XP-C cells OS=Homo sapiens GN=XPC PE=1 SV=4 | 394 | 689 | 2.0E-27 |
| sp|P51612|XPC_MOUSE | DNA repair protein complementing XP-C cells homolog OS=Mus musculus GN=Xpc PE=1 SV=2 | 384 | 634 | 9.0E-27 |
| sp|P14736|RAD4_YEAST | DNA repair protein RAD4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD4 PE=1 SV=3 | 240 | 675 | 2.0E-26 |
| sp|Q8W489|RAD4_ARATH | DNA repair protein RAD4 OS=Arabidopsis thaliana GN=RAD4 PE=1 SV=1 | 396 | 640 | 8.0E-20 |
| sp|Q06665|RAD34_YEAST | DNA repair protein RAD34 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD34 PE=1 SV=1 | 399 | 636 | 5.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003677 | DNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| Orthofinder run ID | 4 |
| Orthogroup | 3560 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|5918 MISHLTPTLWEEVDRWRRNSGLELPPSSPKPLNRARTRASHKIPGRKGHNKADSDREGRDWDKSAKKLEPGHVDM SHGDPLFRLMQYLVPWWKQRFRITAPGLRKRGYMPMERLDRLIKAHKTEFDDAQRFGERIPNIEAFRKHAQNCQG SRDVGSQLFTALLRGLGLEARLVSNLQCLGFGWNKFEDAEPEEMGKDGLFGAKENRDRHKSSKPSYKKATKPMKE ETARKTRTRNKTRSFNDMEMDLSPKKGQTSTRRFDLDLEYPHYWTEVLSPVTNKYLPVESTVKGVVATNRDLVES LAPRAKDLTIRYLKKQMFPGRTKGARMPMERIPIYNHNGKVKRYEQIDWFKSVMAGYIRGTKKHPVTEADELEDS TDLMPAKPEKKEVKEGQETLQYYKQSKEFVLERHLKREEALKPEASPVKIFKNKTKGGKVEDEDVYLRTDVLQVK SAETWHKQGRAPLSGEKPLKRVPYRAATLNRRREILEAEAATGEKVLQGLYSHAQTDWIIPPPIKNGVIPKNGYG NIDLFAEHMCPKGAVHVPYRGAVRVCKRLQIDYAEAVVDFEFGHRMAVPVIRGVVIAEEYYDQLIVELEKDEAER ARKEDEKRRKTVLGRWRKFIMGLRIVERIRQDYGDIDEDVLVLGHEKKSDAAPESDADMGGGFLPEGYEEEEEPH VTSSFFPAGDSDDENDGNGDGGLIMEVENDGHAPEVADSNVTQRALKETGKKSVKGTKARGESSSTRMRTRSQRK LARIYDGEEERGSACNEDE* |
| Coding | >OphauB2|5918 ATGATATCACACCTAACACCAACACTGTGGGAAGAGGTTGACCGTTGGCGGCGCAATTCGGGACTCGAGCTGCCG CCCTCTTCGCCAAAGCCACTAAACAGAGCCCGAACTAGAGCAAGCCACAAAATTCCAGGTCGAAAGGGGCACAAC AAGGCCGATTCCGACAGAGAGGGTCGCGACTGGGACAAGTCCGCCAAGAAGCTCGAACCGGGTCATGTTGATATG AGCCACGGAGATCCCTTGTTCAGGCTCATGCAATATCTAGTGCCGTGGTGGAAGCAGCGCTTTCGAATAACCGCC CCTGGGCTGCGCAAACGAGGCTACATGCCCATGGAACGCCTCGACAGACTCATCAAGGCCCATAAGACCGAGTTT GATGATGCTCAAAGATTTGGCGAACGTATTCCCAATATTGAAGCATTCCGCAAACACGCCCAAAACTGCCAAGGC AGCCGCGATGTTGGGTCACAGCTTTTCACGGCGCTTCTCCGGGGACTTGGCCTCGAGGCGCGGCTGGTAAGTAAT TTGCAGTGCTTGGGATTTGGCTGGAACAAGTTTGAAGATGCAGAACCTGAAGAGATGGGTAAAGATGGACTTTTT GGAGCAAAAGAAAACCGAGACAGGCACAAGTCAAGCAAGCCTAGCTACAAGAAGGCTACCAAGCCTATGAAAGAA GAAACGGCGCGCAAAACCCGCACTCGGAACAAGACCAGATCATTCAACGACATGGAGATGGATCTTAGTCCTAAG AAAGGACAAACTTCGACGAGGAGGTTCGATCTAGATCTCGAGTATCCTCACTACTGGACTGAAGTACTTTCTCCG GTCACAAACAAGTACTTGCCCGTTGAATCGACAGTCAAGGGCGTGGTTGCGACGAATCGCGACTTGGTGGAATCG CTGGCGCCCCGTGCGAAGGACTTGACCATCAGATATCTCAAAAAGCAAATGTTCCCTGGACGAACCAAAGGCGCA CGAATGCCTATGGAGAGAATTCCCATATATAATCACAACGGGAAAGTTAAGCGCTACGAGCAGATTGACTGGTTC AAATCAGTCATGGCGGGATATATTCGTGGCACGAAAAAACACCCCGTGACCGAAGCAGACGAGCTGGAAGACTCA ACTGATCTCATGCCGGCGAAGCCAGAGAAGAAAGAGGTCAAGGAAGGACAGGAAACTCTACAATACTACAAGCAG TCCAAGGAATTCGTCCTAGAGAGACATTTGAAGCGTGAAGAGGCACTAAAACCTGAAGCTTCTCCCGTCAAGATT TTTAAAAACAAGACTAAAGGTGGCAAGGTGGAAGACGAAGATGTCTATCTTCGCACAGATGTACTCCAAGTCAAG AGTGCTGAAACGTGGCATAAACAAGGAAGAGCACCGCTATCTGGAGAAAAGCCCCTCAAGCGCGTCCCGTACCGT GCCGCTACACTTAACAGGCGGAGAGAGATTCTGGAGGCGGAGGCGGCGACGGGAGAGAAAGTGCTTCAAGGCCTC TATAGCCATGCGCAAACGGACTGGATTATTCCACCGCCTATCAAAAACGGTGTGATTCCCAAGAACGGATACGGA AATATCGATTTATTTGCGGAGCACATGTGTCCAAAAGGCGCAGTCCATGTACCATATCGGGGGGCCGTGCGCGTA TGCAAGCGGTTGCAGATTGATTACGCCGAAGCAGTTGTGGATTTTGAATTTGGGCACCGAATGGCGGTACCAGTC ATCCGAGGCGTCGTAATTGCCGAGGAATACTACGACCAGCTCATAGTTGAGCTTGAGAAGGACGAAGCGGAGAGG GCGAGAAAGGAGGACGAGAAGCGGCGCAAGACGGTTCTTGGCCGTTGGCGCAAGTTTATCATGGGGCTTCGCATC GTGGAAAGAATTCGCCAAGATTACGGCGATATCGATGAAGATGTGCTTGTACTCGGACATGAAAAAAAAAGCGAT GCAGCGCCAGAGTCTGATGCCGACATGGGCGGAGGTTTCTTGCCTGAAGGGTACGAGGAGGAAGAAGAGCCACAT GTTACATCGAGCTTCTTTCCCGCTGGTGATAGCGACGACGAAAACGATGGAAATGGCGATGGAGGACTCATAATG GAGGTGGAGAATGACGGACACGCACCCGAGGTAGCCGATTCAAACGTGACACAAAGAGCTCTGAAGGAGACTGGG AAGAAGAGTGTCAAGGGGACAAAAGCCAGAGGAGAGTCTAGCTCAACGAGAATGCGTACTCGGAGTCAGCGCAAA CTCGCCAGGATATATGATGGAGAAGAAGAAAGGGGGAGCGCCTGCAATGAAGACGAATAA |
| Transcript | >OphauB2|5918 ATGATATCACACCTAACACCAACACTGTGGGAAGAGGTTGACCGTTGGCGGCGCAATTCGGGACTCGAGCTGCCG CCCTCTTCGCCAAAGCCACTAAACAGAGCCCGAACTAGAGCAAGCCACAAAATTCCAGGTCGAAAGGGGCACAAC AAGGCCGATTCCGACAGAGAGGGTCGCGACTGGGACAAGTCCGCCAAGAAGCTCGAACCGGGTCATGTTGATATG AGCCACGGAGATCCCTTGTTCAGGCTCATGCAATATCTAGTGCCGTGGTGGAAGCAGCGCTTTCGAATAACCGCC CCTGGGCTGCGCAAACGAGGCTACATGCCCATGGAACGCCTCGACAGACTCATCAAGGCCCATAAGACCGAGTTT GATGATGCTCAAAGATTTGGCGAACGTATTCCCAATATTGAAGCATTCCGCAAACACGCCCAAAACTGCCAAGGC AGCCGCGATGTTGGGTCACAGCTTTTCACGGCGCTTCTCCGGGGACTTGGCCTCGAGGCGCGGCTGGTAAGTAAT TTGCAGTGCTTGGGATTTGGCTGGAACAAGTTTGAAGATGCAGAACCTGAAGAGATGGGTAAAGATGGACTTTTT GGAGCAAAAGAAAACCGAGACAGGCACAAGTCAAGCAAGCCTAGCTACAAGAAGGCTACCAAGCCTATGAAAGAA GAAACGGCGCGCAAAACCCGCACTCGGAACAAGACCAGATCATTCAACGACATGGAGATGGATCTTAGTCCTAAG AAAGGACAAACTTCGACGAGGAGGTTCGATCTAGATCTCGAGTATCCTCACTACTGGACTGAAGTACTTTCTCCG GTCACAAACAAGTACTTGCCCGTTGAATCGACAGTCAAGGGCGTGGTTGCGACGAATCGCGACTTGGTGGAATCG CTGGCGCCCCGTGCGAAGGACTTGACCATCAGATATCTCAAAAAGCAAATGTTCCCTGGACGAACCAAAGGCGCA CGAATGCCTATGGAGAGAATTCCCATATATAATCACAACGGGAAAGTTAAGCGCTACGAGCAGATTGACTGGTTC AAATCAGTCATGGCGGGATATATTCGTGGCACGAAAAAACACCCCGTGACCGAAGCAGACGAGCTGGAAGACTCA ACTGATCTCATGCCGGCGAAGCCAGAGAAGAAAGAGGTCAAGGAAGGACAGGAAACTCTACAATACTACAAGCAG TCCAAGGAATTCGTCCTAGAGAGACATTTGAAGCGTGAAGAGGCACTAAAACCTGAAGCTTCTCCCGTCAAGATT TTTAAAAACAAGACTAAAGGTGGCAAGGTGGAAGACGAAGATGTCTATCTTCGCACAGATGTACTCCAAGTCAAG AGTGCTGAAACGTGGCATAAACAAGGAAGAGCACCGCTATCTGGAGAAAAGCCCCTCAAGCGCGTCCCGTACCGT GCCGCTACACTTAACAGGCGGAGAGAGATTCTGGAGGCGGAGGCGGCGACGGGAGAGAAAGTGCTTCAAGGCCTC TATAGCCATGCGCAAACGGACTGGATTATTCCACCGCCTATCAAAAACGGTGTGATTCCCAAGAACGGATACGGA AATATCGATTTATTTGCGGAGCACATGTGTCCAAAAGGCGCAGTCCATGTACCATATCGGGGGGCCGTGCGCGTA TGCAAGCGGTTGCAGATTGATTACGCCGAAGCAGTTGTGGATTTTGAATTTGGGCACCGAATGGCGGTACCAGTC ATCCGAGGCGTCGTAATTGCCGAGGAATACTACGACCAGCTCATAGTTGAGCTTGAGAAGGACGAAGCGGAGAGG GCGAGAAAGGAGGACGAGAAGCGGCGCAAGACGGTTCTTGGCCGTTGGCGCAAGTTTATCATGGGGCTTCGCATC GTGGAAAGAATTCGCCAAGATTACGGCGATATCGATGAAGATGTGCTTGTACTCGGACATGAAAAAAAAAGCGAT GCAGCGCCAGAGTCTGATGCCGACATGGGCGGAGGTTTCTTGCCTGAAGGGTACGAGGAGGAAGAAGAGCCACAT GTTACATCGAGCTTCTTTCCCGCTGGTGATAGCGACGACGAAAACGATGGAAATGGCGATGGAGGACTCATAATG GAGGTGGAGAATGACGGACACGCACCCGAGGTAGCCGATTCAAACGTGACACAAAGAGCTCTGAAGGAGACTGGG AAGAAGAGTGTCAAGGGGACAAAAGCCAGAGGAGAGTCTAGCTCAACGAGAATGCGTACTCGGAGTCAGCGCAAA CTCGCCAGGATATATGATGGAGAAGAAGAAAGGGGGAGCGCCTGCAATGAAGACGAATAA |
| Gene | >OphauB2|5918 ATGATATCACACCTAACACCAACACTGTGGGAAGAGGTTGACCGTTGGCGGCGCAATTCGGGACTCGAGCTGCCG CCCTCTTCGCCAAAGCCACTAAACAGAGCCCGAACTAGAGCAAGCCACAAAATTCCAGGTCGAAAGGGGCACAAC AAGGCCGATTCCGACAGAGAGGGTCGCGACTGGGACAAGTCCGCCAAGAAGCTCGAACCGGGTCATGTTGATATG AGCCACGGAGATCCCTTGTTCAGGCTCATGCAATATCTAGTGCCGTGGTGGAAGCAGCGCTTTCGAATAACCGCC CCTGGGCTGCGCAAACGAGGCTACATGCCCATGGAACGCCTCGACAGACTCATCAAGGCCCATAAGACCGAGTTT GATGATGCTCAAAGATTTGGCGAACGTATTCCCAATATTGAAGCATTCCGCAAACACGCCCAAAACTGCCAAGGC AGCCGCGATGTTGGGTCACAGCTTTTCACGGCGCTTCTCCGGGGACTTGGCCTCGAGGCGCGGCTGGTAAGTAAT TTGCAGTGCTTGGGATTTGGCTGGAACAAGTTTGAAGATGCAGAACCTGAAGAGATGGGTAAAGATGGACTTTTT GGAGCAAAAGAAAACCGAGACAGGCACAAGTCAAGCAAGCCTAGCTACAAGAAGGCTACCAAGCCTATGAAAGAA GAAACGGCGCGCAAAACCCGCACTCGGAACAAGACCAGATCATTCAACGACAGTCAGCAAAACCTGCAACCTGAC TTTGCAGATACTGATGATGAATCAATAGTGGAGATGGATCTTAGTCCTAAGAAAGGACAAACTTCGACGAGGAGG TTCGATCTAGATCTCGAGTATCCTCACTACTGGACTGAAGTACTTTCTCCGGTCACAAACAAGTACTTGCCCGTT GAATCGACAGTCAAGGGCGTGGTTGCGACGAATCGCGACTTGGTGGAATCGCTGGCGCCCCGTGGTTTGAAGGCG GATAAAGCAAGACAGACCTTGGCCTACGTAGTTGGGCACTCTCCAGACGGCACAGCGAAGGACTTGACCATCAGA TATCTCAAAAAGCAAATGTTCCCTGGACGAACCAAAGGCGCACGAATGCCTATGGAGAGAATTCCCATATATAAT CACAACGGGAAAGTTAAGCGCTACGAGCAGATTGACTGGTTCAAATCAGTCATGGCGGGATATATTCGTGGCACG AAAAAACACCCCGTGACCGAAGCAGACGAGCTGGAAGACTCAACTGATCTCATGCCGGCGAAGCCAGAGAAGAAA GAGGTCAAGGAAGGACAGGAAACTCTACAATACTACAAGCAGTCCAAGGAATTCGTCCTAGAGAGACATTTGAAG CGTGAAGAGGCACTAAAACCTGAAGCTTCTCCCGTCAAGATTTTTAAAAACAAGACTAAAGGTGGCAAGGTGGAA GACGAAGATGTCTATCTTCGCACAGATGTACTCCAAGTCAAGAGTGCTGAAACGTGGCATAAACAAGGAAGAGCA CCGCTATCTGGAGAAAAGCCCCTCAAGCGCGTCCCGTACCGTGCCGCTACACTTAACAGGCGGAGAGAGATTCTG GAGGCGGAGGCGGCGACGGGAGAGAAAGTGCTTCAAGGCCTCTATAGCCATGCGCAAACGGACTGGATTATTCCA CCGCCTATCAAAAACGGTGTGATTCCCAAGAACGGATACGGGTATGTTGCAGCAAGCCCGAAGCGACTGGTACAT GTAGCATGCTGACGGCCGAGGTCACAGAAATATCGATTTATTTGCGGAGCACATGTGTCCAAAAGGCGCAGTCCA TGTACCATATCGGGGGGCCGTGCGCGTATGCAAGCGGTTGCAGATTGATTACGCCGAAGCAGTTGTGGATTTTGA ATTTGGGCACCGAATGGCGGTACCAGTCATCCGAGGCGTCGTAATTGCCGAGGAATACTACGACCAGCTCATAGT TGAGCTTGAGAAGGACGAAGCGGAGAGGGCGAGAAAGGAGGACGAGAAGCGGCGCAAGACGGTTCTTGGCCGTTG GCGCAAGTTTATCATGGGGCTTCGCATCGTGGAAAGAATTCGCCAAGATTACGGCGATATCGATGAAGATGTGCT TGTACTCGGACATGAAAAAAAAAGCGATGCAGCGCCAGAGTCTGATGCCGACATGGGCGGAGGTTTCTTGCCTGA AGGGTACGAGGAGGAAGAAGAGCCACATGTTACATCGAGCTTCTTTCCCGCTGGTGATAGCGACGACGAAAACGA TGGAAATGGCGATGGAGGACTCATAATGGAGGTGGAGAATGACGGACACGCACCCGAGGTAGCCGATTCAAACGT GACACAAAGAGCTCTGAAGGAGACTGGGAAGAAGAGTGTCAAGGGGACAAAAGCCAGAGGAGAGTCTAGCTCAAC GAGAATGCGTACTCGGAGTCAGCGCAAACTCGCCAGGATATATGATGGAGAAGAAGAAAGGGGGAGCGCCTGCAA TGAAGACGAATAA |