Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauB2\|5914
Gene name
Location	Contig_5:161340..162326
Strand	+
Gene length (bp)	986
Transcript length (bp)	831
Coding sequence length (bp)	831
Protein length (aa)	277

PFAM Domains

(None)

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q0E7J8\|REV7_SCHPO	DNA polymerase zeta processivity subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rev7 PE=3 SV=1	24	275	3.0E-14

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 61	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	22	44	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauB2\|5914 MDADTDADMDADMDAATTQVHPTSASTLLSSFSSFLIVAIHLLLRHRNLYPAATFLLARAYNLPVYQSRHAGVCT WVRDAVASAMDLVRSGRARSIAFVVHKASFPGLSRQSPPPHPSRSPTSSCDPPIHKSLASAAIVERWIFDIHTFP FDALKLAETHERRSGRFFEREPRLPDQVNWPNVQQALRAALRRLSDAAETLEPPTNQDDCTFTLAVEMRQHSEAP VDHPQLWIPSEPHLQPSNPSSASALSPDASTTPIRAVRAGPLFFECYVEQA*
Coding	>OphauB2\|5914 ATGGACGCCGACACCGACGCCGACATGGACGCCGACATGGACGCCGCCACGACACAAGTCCATCCCACCTCGGCC TCGACCCTCCTCTCCTCGTTTTCCTCTTTTCTCATTGTCGCCATTCATTTACTCCTCCGCCACCGTAATCTCTAC CCTGCTGCTACTTTTCTCCTCGCTCGCGCCTACAACCTCCCCGTCTACCAGTCGCGCCATGCCGGCGTCTGCACC TGGGTCCGCGATGCCGTTGCCTCTGCCATGGATCTAGTCCGCTCTGGTCGTGCTCGCTCCATTGCCTTTGTCGTG CACAAGGCATCTTTTCCTGGCCTGTCGCGCCAATCACCCCCTCCGCACCCTAGTCGCTCCCCGACTAGCTCCTGC GACCCTCCAATCCACAAGAGCCTCGCTTCCGCCGCCATTGTTGAACGCTGGATCTTTGACATTCACACCTTTCCC TTTGACGCCCTCAAGCTCGCAGAGACGCATGAACGTCGCTCTGGTAGATTTTTTGAGCGCGAGCCACGTCTCCCC GATCAAGTCAATTGGCCCAATGTTCAGCAGGCGCTGCGAGCTGCCTTGCGTCGCCTCTCAGATGCTGCTGAGACA CTTGAGCCTCCGACTAATCAAGACGACTGCACTTTTACCTTGGCCGTTGAGATGCGCCAACATTCCGAGGCGCCG GTAGACCATCCACAGCTCTGGATCCCATCCGAGCCACACCTCCAACCATCAAACCCTTCTAGCGCCTCTGCATTG AGCCCAGATGCTTCAACGACACCCATTCGCGCTGTTCGGGCAGGGCCCCTCTTCTTTGAATGCTACGTTGAGCAG GCTTAA
Transcript	>OphauB2\|5914 ATGGACGCCGACACCGACGCCGACATGGACGCCGACATGGACGCCGCCACGACACAAGTCCATCCCACCTCGGCC TCGACCCTCCTCTCCTCGTTTTCCTCTTTTCTCATTGTCGCCATTCATTTACTCCTCCGCCACCGTAATCTCTAC CCTGCTGCTACTTTTCTCCTCGCTCGCGCCTACAACCTCCCCGTCTACCAGTCGCGCCATGCCGGCGTCTGCACC TGGGTCCGCGATGCCGTTGCCTCTGCCATGGATCTAGTCCGCTCTGGTCGTGCTCGCTCCATTGCCTTTGTCGTG CACAAGGCATCTTTTCCTGGCCTGTCGCGCCAATCACCCCCTCCGCACCCTAGTCGCTCCCCGACTAGCTCCTGC GACCCTCCAATCCACAAGAGCCTCGCTTCCGCCGCCATTGTTGAACGCTGGATCTTTGACATTCACACCTTTCCC TTTGACGCCCTCAAGCTCGCAGAGACGCATGAACGTCGCTCTGGTAGATTTTTTGAGCGCGAGCCACGTCTCCCC GATCAAGTCAATTGGCCCAATGTTCAGCAGGCGCTGCGAGCTGCCTTGCGTCGCCTCTCAGATGCTGCTGAGACA CTTGAGCCTCCGACTAATCAAGACGACTGCACTTTTACCTTGGCCGTTGAGATGCGCCAACATTCCGAGGCGCCG GTAGACCATCCACAGCTCTGGATCCCATCCGAGCCACACCTCCAACCATCAAACCCTTCTAGCGCCTCTGCATTG AGCCCAGATGCTTCAACGACACCCATTCGCGCTGTTCGGGCAGGGCCCCTCTTCTTTGAATGCTACGTTGAGCAG GCTTAA
Gene	>OphauB2\|5914 ATGGACGCCGACACCGACGCCGACATGGACGCCGACATGGACGCCGCCACGACACAAGTCCATCCCACCTCGGCC TCGACCCTCCTCTCCTCGTTTTCCTCTTTTCTCATTGTCGCCATTCATTTACTCCTCCGCCACCGTAATCTCTAC CCTGCTGCTACTTTTCTCCTCGCTCGCGCCTACAACCTCCCCGTCTACCAGTCGCGCCATGCCGGCGTCTGCACC TGGGTCCGCGATGCCGTTGCCTCTGCCATGGATCTAGTCCGCTCTGGTCGTGCTCGCTCCATTGCCTTTGTCGTG CACAAGGCATCTTTTCCTGGCCTGTCGCGCCAATCACCCCCTCCGCACCCTAGTCGCTCCCCGACTGTCAGTTTT TCTTCCTTGTTTTTTCCCTTCTTTATTCGTCTCTCTTGCACCTTTCCTTAAATCAACTAATAACCCCAACTCCTC CCACAGAGCTCCTGCGACCCTCCAATCCACAAGAGCCTCGCTTCCGCCGCCATTGTTGAACGCTGGATCTTTGAC ATTCACACCTTTCCCTTTGACGCCCTCAAGCTCGCAGAGACGCATGAACGTCGCTCTGGTAGATTTTTTGAGCGC GAGCCACGTCTCCCCGATCAAGTCAATTGGCCCAATGTTCAGCAGGCGCTGCGAGCTGCCTTGCGTCGCCTCTCA GATGCTGCTGAGACACTTGAGCCTCCGACTAATCAAGACGACTGCACTTTTACCTTGGCCGTTGAGATGCGCCAA CATTCCGAGGCGCCGGTAGACGTACGTTTTTTTTTTCCCGCCATTTGGAGCACACGACAACTTGCTTGCTAATTA CCTCTTTCTAGCATCCACAGCTCTGGATCCCATCCGAGCCACACCTCCAACCATCAAACCCTTCTAGCGCCTCTG CATTGAGCCCAGATGCTTCAACGACACCCATTCGCGCTGTTCGGGCAGGGCCCCTCTTCTTTGAATGCTACGTTG AGCAGGCTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail