© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|5866 |
| Gene name | |
| Location | Contig_5:32141..33841 |
| Strand | + |
| Gene length (bp) | 1700 |
| Transcript length (bp) | 1638 |
| Coding sequence length (bp) | 1638 |
| Protein length (aa) | 546 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01053 | Cys_Met_Meta_PP | Cys/Met metabolism PLP-dependent enzyme | 2.2E-19 | 208 | 533 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74314|MET7_SCHPO | Probable cystathionine gamma-synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15D4.09c PE=3 SV=1 | 208 | 530 | 8.0E-63 |
| sp|Q12198|METW_YEAST | Putative cystathionine gamma-synthase YLL058W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLL058W PE=1 SV=1 | 9 | 534 | 5.0E-62 |
| sp|P38675|MET7_NEUCR | Cystathionine gamma-synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=met-7 PE=3 SV=3 | 208 | 539 | 3.0E-56 |
| sp|P47164|MET7_YEAST | Cystathionine gamma-synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STR2 PE=1 SV=1 | 203 | 537 | 1.0E-43 |
| sp|Q04533|METX_YEAST | Putative cystathionine gamma-synthase YML082W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML082W PE=1 SV=1 | 208 | 534 | 5.0E-40 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74314|MET7_SCHPO | Probable cystathionine gamma-synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15D4.09c PE=3 SV=1 | 208 | 530 | 8.0E-63 |
| sp|Q12198|METW_YEAST | Putative cystathionine gamma-synthase YLL058W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLL058W PE=1 SV=1 | 9 | 534 | 5.0E-62 |
| sp|P38675|MET7_NEUCR | Cystathionine gamma-synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=met-7 PE=3 SV=3 | 208 | 539 | 3.0E-56 |
| sp|P47164|MET7_YEAST | Cystathionine gamma-synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STR2 PE=1 SV=1 | 203 | 537 | 1.0E-43 |
| sp|Q04533|METX_YEAST | Putative cystathionine gamma-synthase YML082W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML082W PE=1 SV=1 | 208 | 534 | 5.0E-40 |
| sp|P0A4K2|METC_LACLA | Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1 | 210 | 534 | 1.0E-10 |
| sp|A2RM21|METC_LACLM | Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1 | 210 | 534 | 1.0E-10 |
| sp|Q04533|METX_YEAST | Putative cystathionine gamma-synthase YML082W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML082W PE=1 SV=1 | 1 | 170 | 1.0E-09 |
| sp|P0C2T9|METC_LACLC | Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1 | 210 | 534 | 1.0E-09 |
| sp|Q83A83|METC_COXBU | Cystathionine beta-lyase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=metC PE=1 SV=1 | 282 | 534 | 7.0E-09 |
| sp|Q1M0P5|METB_HELPX | Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1 | 164 | 533 | 6.0E-08 |
| sp|P47164|MET7_YEAST | Cystathionine gamma-synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STR2 PE=1 SV=1 | 5 | 152 | 8.0E-08 |
| sp|P56069|METB_HELPY | Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=1 SV=1 | 210 | 533 | 1.0E-07 |
| sp|P31373|CYS3_YEAST | Cystathionine gamma-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYS3 PE=1 SV=2 | 186 | 537 | 2.0E-07 |
| sp|O05394|MCCB_BACSU | Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1 | 210 | 530 | 4.0E-07 |
| sp|Q9ZMW7|METB_HELPJ | Cystathionine gamma-synthase OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=metB PE=3 SV=1 | 210 | 530 | 6.0E-07 |
| sp|P55216|CGL2_CAEEL | Putative cystathionine gamma-lyase 2 OS=Caenorhabditis elegans GN=cth-2 PE=3 SV=1 | 260 | 523 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0019346 | transsulfuration | Yes |
| GO:0030170 | pyridoxal phosphate binding | Yes |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0019842 | vitamin binding | No |
| GO:0006790 | sulfur compound metabolic process | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0000096 | sulfur amino acid metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:1901605 | alpha-amino acid metabolic process | No |
| GO:0006534 | cysteine metabolic process | No |
| GO:0043167 | ion binding | No |
| GO:0006520 | cellular amino acid metabolic process | No |
| GO:0050667 | homocysteine metabolic process | No |
| GO:0009069 | serine family amino acid metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0036094 | small molecule binding | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0070279 | vitamin B6 binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009092 | homoserine metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0043168 | anion binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 32 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|5866 MSAPITTPFGHAIPPAPRHSVTVHMPGWAAAERFAYDVGSLVASFKNAYPRMKPHPDITSLSQAVLGRLGTADRD CYLFSSLQSARECVEYSTSSARDNGTDKQPVALDQISIRCFTAKDLFYAVIFPLPQSATVAGFWSSPGAGLSSRF AEANLACLECLTQVAVPDSETPRPRFDGAVHHLLRERIISYLERAPCSLAQPSPTTGDVYLFQSGMAAIYKPHSY MLSLYHGTTVLFGMAFTNTVTLFGELGPGLKFFPRGIDEDLSDLEAFLQDERVHGRKVQAIWAEFPANPSLITPN LVRLRSLADEYDIVLAIDDTIGSWANIDITSKVDILVTSLTKSFNGYADVIAGSAILNPSSAKYRDLKPLFDRHY VPELYADDVETIERNSRDYLTRAAILNANASALAQYFAQCAKDPSNAVVRALYPSVNASGKYYTQVMRSETTHFK PGYGSLLSVEFCDLATTRAFYEELNVHKGPHQGAPLTLAVPYNVCVYGKRLDWAIEHGYKPTQIRIAVGLEDTNT LLEDFRIAVVAANQAKGQAE* |
| Coding | >OphauB2|5866 ATGTCGGCTCCCATCACGACTCCCTTTGGCCATGCCATACCGCCAGCGCCCCGCCATTCAGTAACGGTGCACATG CCTGGATGGGCAGCTGCTGAGCGGTTCGCTTACGATGTTGGCTCCCTTGTTGCATCTTTCAAAAATGCCTACCCT CGAATGAAGCCGCACCCAGACATAACCAGCCTCAGCCAAGCTGTCCTTGGACGACTAGGGACAGCTGACCGTGAT TGCTATCTCTTCTCGTCTCTGCAGTCTGCCAGAGAATGCGTCGAGTACTCTACGTCGAGCGCACGAGACAACGGC ACCGATAAGCAGCCAGTGGCGTTGGACCAAATCAGTATTCGTTGTTTTACTGCCAAGGACCTTTTCTATGCCGTC ATCTTTCCCCTGCCCCAGAGCGCCACTGTTGCCGGCTTCTGGAGCAGCCCAGGCGCGGGCTTATCGTCTCGATTT GCAGAGGCCAACCTCGCCTGTCTAGAATGTCTGACTCAAGTGGCAGTGCCCGACTCTGAGACGCCCAGGCCAAGA TTTGACGGTGCCGTGCATCACCTGCTACGGGAGAGAATTATCTCCTATCTTGAGCGCGCCCCGTGCAGCCTCGCG CAACCGAGTCCAACGACAGGCGACGTTTACCTCTTCCAGTCAGGCATGGCCGCCATCTATAAGCCGCACTCGTAC ATGCTCAGTCTCTACCACGGAACAACTGTCCTCTTTGGCATGGCATTCACAAATACCGTTACCTTGTTTGGAGAA CTAGGTCCTGGTTTGAAATTCTTTCCCCGCGGCATAGATGAGGACCTGTCGGATTTAGAGGCTTTTCTCCAAGAC GAACGCGTTCACGGACGCAAAGTCCAGGCGATTTGGGCCGAATTTCCTGCCAATCCCAGTCTCATTACTCCAAAC CTCGTCCGGCTCCGCTCGCTGGCAGACGAATACGACATAGTACTTGCCATTGACGACACCATAGGAAGCTGGGCC AACATTGACATCACCAGCAAGGTTGATATATTGGTCACTTCACTGACCAAGTCTTTCAATGGCTATGCAGATGTC ATTGCTGGGAGCGCCATTCTCAACCCCTCGTCTGCCAAGTATCGCGATTTGAAGCCGCTCTTTGATCGACACTAT GTCCCGGAGCTGTACGCCGACGACGTTGAGACTATTGAGCGAAACAGCCGCGATTATCTCACTCGCGCTGCGATA CTCAATGCCAATGCCAGTGCCCTTGCGCAGTACTTTGCACAATGTGCAAAGGATCCCAGCAATGCAGTTGTCAGA GCGCTCTATCCCTCAGTTAATGCCTCTGGCAAGTATTACACCCAAGTCATGCGCTCTGAAACAACACACTTCAAG CCCGGCTACGGCAGCCTCTTGAGCGTCGAGTTTTGCGACTTGGCCACGACGCGTGCCTTTTATGAAGAGCTCAAT GTGCATAAAGGCCCCCACCAAGGAGCTCCACTCACCTTGGCCGTTCCGTATAACGTTTGCGTCTATGGGAAGCGC CTTGATTGGGCAATAGAGCATGGCTATAAGCCGACGCAGATACGCATTGCCGTGGGCCTGGAGGATACGAATACT CTCCTCGAGGACTTTAGAATTGCAGTAGTGGCGGCCAACCAGGCAAAGGGACAAGCAGAGTAA |
| Transcript | >OphauB2|5866 ATGTCGGCTCCCATCACGACTCCCTTTGGCCATGCCATACCGCCAGCGCCCCGCCATTCAGTAACGGTGCACATG CCTGGATGGGCAGCTGCTGAGCGGTTCGCTTACGATGTTGGCTCCCTTGTTGCATCTTTCAAAAATGCCTACCCT CGAATGAAGCCGCACCCAGACATAACCAGCCTCAGCCAAGCTGTCCTTGGACGACTAGGGACAGCTGACCGTGAT TGCTATCTCTTCTCGTCTCTGCAGTCTGCCAGAGAATGCGTCGAGTACTCTACGTCGAGCGCACGAGACAACGGC ACCGATAAGCAGCCAGTGGCGTTGGACCAAATCAGTATTCGTTGTTTTACTGCCAAGGACCTTTTCTATGCCGTC ATCTTTCCCCTGCCCCAGAGCGCCACTGTTGCCGGCTTCTGGAGCAGCCCAGGCGCGGGCTTATCGTCTCGATTT GCAGAGGCCAACCTCGCCTGTCTAGAATGTCTGACTCAAGTGGCAGTGCCCGACTCTGAGACGCCCAGGCCAAGA TTTGACGGTGCCGTGCATCACCTGCTACGGGAGAGAATTATCTCCTATCTTGAGCGCGCCCCGTGCAGCCTCGCG CAACCGAGTCCAACGACAGGCGACGTTTACCTCTTCCAGTCAGGCATGGCCGCCATCTATAAGCCGCACTCGTAC ATGCTCAGTCTCTACCACGGAACAACTGTCCTCTTTGGCATGGCATTCACAAATACCGTTACCTTGTTTGGAGAA CTAGGTCCTGGTTTGAAATTCTTTCCCCGCGGCATAGATGAGGACCTGTCGGATTTAGAGGCTTTTCTCCAAGAC GAACGCGTTCACGGACGCAAAGTCCAGGCGATTTGGGCCGAATTTCCTGCCAATCCCAGTCTCATTACTCCAAAC CTCGTCCGGCTCCGCTCGCTGGCAGACGAATACGACATAGTACTTGCCATTGACGACACCATAGGAAGCTGGGCC AACATTGACATCACCAGCAAGGTTGATATATTGGTCACTTCACTGACCAAGTCTTTCAATGGCTATGCAGATGTC ATTGCTGGGAGCGCCATTCTCAACCCCTCGTCTGCCAAGTATCGCGATTTGAAGCCGCTCTTTGATCGACACTAT GTCCCGGAGCTGTACGCCGACGACGTTGAGACTATTGAGCGAAACAGCCGCGATTATCTCACTCGCGCTGCGATA CTCAATGCCAATGCCAGTGCCCTTGCGCAGTACTTTGCACAATGTGCAAAGGATCCCAGCAATGCAGTTGTCAGA GCGCTCTATCCCTCAGTTAATGCCTCTGGCAAGTATTACACCCAAGTCATGCGCTCTGAAACAACACACTTCAAG CCCGGCTACGGCAGCCTCTTGAGCGTCGAGTTTTGCGACTTGGCCACGACGCGTGCCTTTTATGAAGAGCTCAAT GTGCATAAAGGCCCCCACCAAGGAGCTCCACTCACCTTGGCCGTTCCGTATAACGTTTGCGTCTATGGGAAGCGC CTTGATTGGGCAATAGAGCATGGCTATAAGCCGACGCAGATACGCATTGCCGTGGGCCTGGAGGATACGAATACT CTCCTCGAGGACTTTAGAATTGCAGTAGTGGCGGCCAACCAGGCAAAGGGACAAGCAGAGTAA |
| Gene | >OphauB2|5866 ATGTCGGCTCCCATCACGACTCCCTTTGGCCATGCCATACCGCCAGCGCCCCGCCATTCAGTAACGGTGCACATG CCTGGATGGGCAGCTGCTGAGCGGTTCGCTTACGATGTTGGCTCCCTTGTTGCATCTTTCAAAAATGCCTACCCT CGAATGAAGCCGCACCCAGACATAACCAGCGTGACTATACCTCCCCCACCCGTGACTTTTGCTCGCCTCGCCTCA TCTGACACTCCGTGCAGCTCAGCCAAGCTGTCCTTGGACGACTAGGGACAGCTGACCGTGATTGCTATCTCTTCT CGTCTCTGCAGTCTGCCAGAGAATGCGTCGAGTACTCTACGTCGAGCGCACGAGACAACGGCACCGATAAGCAGC CAGTGGCGTTGGACCAAATCAGTATTCGTTGTTTTACTGCCAAGGACCTTTTCTATGCCGTCATCTTTCCCCTGC CCCAGAGCGCCACTGTTGCCGGCTTCTGGAGCAGCCCAGGCGCGGGCTTATCGTCTCGATTTGCAGAGGCCAACC TCGCCTGTCTAGAATGTCTGACTCAAGTGGCAGTGCCCGACTCTGAGACGCCCAGGCCAAGATTTGACGGTGCCG TGCATCACCTGCTACGGGAGAGAATTATCTCCTATCTTGAGCGCGCCCCGTGCAGCCTCGCGCAACCGAGTCCAA CGACAGGCGACGTTTACCTCTTCCAGTCAGGCATGGCCGCCATCTATAAGCCGCACTCGTACATGCTCAGTCTCT ACCACGGAACAACTGTCCTCTTTGGCATGGCATTCACAAATACCGTTACCTTGTTTGGAGAACTAGGTCCTGGTT TGAAATTCTTTCCCCGCGGCATAGATGAGGACCTGTCGGATTTAGAGGCTTTTCTCCAAGACGAACGCGTTCACG GACGCAAAGTCCAGGCGATTTGGGCCGAATTTCCTGCCAATCCCAGTCTCATTACTCCAAACCTCGTCCGGCTCC GCTCGCTGGCAGACGAATACGACATAGTACTTGCCATTGACGACACCATAGGAAGCTGGGCCAACATTGACATCA CCAGCAAGGTTGATATATTGGTCACTTCACTGACCAAGTCTTTCAATGGCTATGCAGATGTCATTGCTGGGAGCG CCATTCTCAACCCCTCGTCTGCCAAGTATCGCGATTTGAAGCCGCTCTTTGATCGACACTATGTCCCGGAGCTGT ACGCCGACGACGTTGAGACTATTGAGCGAAACAGCCGCGATTATCTCACTCGCGCTGCGATACTCAATGCCAATG CCAGTGCCCTTGCGCAGTACTTTGCACAATGTGCAAAGGATCCCAGCAATGCAGTTGTCAGAGCGCTCTATCCCT CAGTTAATGCCTCTGGCAAGTATTACACCCAAGTCATGCGCTCTGAAACAACACACTTCAAGCCCGGCTACGGCA GCCTCTTGAGCGTCGAGTTTTGCGACTTGGCCACGACGCGTGCCTTTTATGAAGAGCTCAATGTGCATAAAGGCC CCCACCAAGGAGCTCCACTCACCTTGGCCGTTCCGTATAACGTTTGCGTCTATGGGAAGCGCCTTGATTGGGCAA TAGAGCATGGCTATAAGCCGACGCAGATACGCATTGCCGTGGGCCTGGAGGATACGAATACTCTCCTCGAGGACT TTAGAATTGCAGTAGTGGCGGCCAACCAGGCAAAGGGACAAGCAGAGTAA |