Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauB2\|5841
Gene name
Location	Contig_49:84509..85551
Strand	-
Gene length (bp)	1042
Transcript length (bp)	888
Coding sequence length (bp)	888
Protein length (aa)	296

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04193	PQ-loop	PQ loop repeat	1.0E-11	161	218

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q03687\|YMP0_YEAST	Uncharacterized membrane protein YMR010W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR010W PE=1 SV=1	12	239	4.0E-29
sp\|Q8N2U9\|PQLC1_HUMAN	PQ-loop repeat-containing protein 1 OS=Homo sapiens GN=PQLC1 PE=1 SV=1	18	260	2.0E-26
sp\|Q5M880\|PQLC1_RAT	PQ-loop repeat-containing protein 1 OS=Rattus norvegicus GN=Pqlc1 PE=1 SV=2	4	258	2.0E-24
sp\|Q80XM9\|PQLC1_MOUSE	PQ-loop repeat-containing protein 1 OS=Mus musculus GN=Pqlc1 PE=1 SV=1	4	258	8.0E-24
sp\|Q0VCC1\|PQLC1_BOVIN	PQ-loop repeat-containing protein 1 OS=Bos taurus GN=PQLC1 PE=2 SV=1	18	243	4.0E-23

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q03687\|YMP0_YEAST	Uncharacterized membrane protein YMR010W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR010W PE=1 SV=1	12	239	4.0E-29
sp\|Q8N2U9\|PQLC1_HUMAN	PQ-loop repeat-containing protein 1 OS=Homo sapiens GN=PQLC1 PE=1 SV=1	18	260	2.0E-26
sp\|Q5M880\|PQLC1_RAT	PQ-loop repeat-containing protein 1 OS=Rattus norvegicus GN=Pqlc1 PE=1 SV=2	4	258	2.0E-24
sp\|Q80XM9\|PQLC1_MOUSE	PQ-loop repeat-containing protein 1 OS=Mus musculus GN=Pqlc1 PE=1 SV=1	4	258	8.0E-24
sp\|Q0VCC1\|PQLC1_BOVIN	PQ-loop repeat-containing protein 1 OS=Bos taurus GN=PQLC1 PE=2 SV=1	18	243	4.0E-23
sp\|Q6NRS2\|PQLC1_XENLA	PQ-loop repeat-containing protein 1 OS=Xenopus laevis GN=pqlc1 PE=2 SV=1	1	243	3.0E-22

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 19	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	4	26	22
2	38	60	22
3	70	89	19
4	132	151	19
5	156	178	22
6	191	213	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauB2\|5841 MSGGWLGACAGFIAPVFIVLSPILSYGDQALSMRRNKSSAGFSLDIPLIMLVASLFRIFYWPGARFDASLLAQSL IMVAMQLLLLKIALDHRPPPSSKGGEAAVPFAGVQRSSLFTAQRPYNFWQWRSPKPYWHFLLYLASGLIICQLVL APMSPVYSAYSIAIGYIGLSVEATLPIPQILANSQSRSCKGFRLSVLVAWLGGDAMKIFWFFTTTTEIPLAFKIC GIFQAACDCLLGAQYFLYGQGETTDDHAVKEHPLGDVQWTSACRPQTTRAHSRSTSQSRRMTQLSESSVD*
Coding	>OphauB2\|5841 ATGAGCGGCGGCTGGCTCGGCGCCTGTGCGGGCTTCATTGCTCCCGTCTTTATTGTCCTGTCTCCCATCCTGTCC TATGGCGACCAGGCGCTGTCGATGCGGCGCAACAAGTCGAGTGCAGGCTTCTCGCTCGACATTCCGCTAATCATG CTCGTTGCCTCGCTCTTTAGAATCTTTTACTGGCCCGGTGCTCGCTTCGATGCAAGTCTGCTGGCCCAGTCGCTC ATCATGGTGGCGATGCAGCTGCTGCTGCTCAAGATTGCTCTCGACCATCGTCCGCCGCCCTCGTCCAAGGGAGGC GAAGCTGCTGTGCCCTTTGCCGGTGTCCAGAGAAGCAGTCTGTTTACGGCGCAGCGGCCATATAACTTTTGGCAG TGGAGGTCGCCCAAGCCATATTGGCACTTTTTGCTCTATCTCGCGAGCGGCCTCATCATCTGCCAGCTCGTCTTG GCGCCCATGTCCCCCGTCTACTCGGCCTATTCAATAGCCATTGGCTACATTGGCCTCTCGGTCGAGGCAACGCTT CCCATTCCGCAGATTCTCGCCAACTCGCAGTCGCGCTCCTGTAAAGGCTTCCGTCTATCAGTCTTGGTGGCCTGG CTGGGCGGAGATGCCATGAAGATTTTCTGGTTCTTCACCACCACTACCGAGATTCCCCTGGCCTTTAAGATTTGC GGCATCTTCCAAGCCGCATGCGATTGCCTTCTTGGCGCCCAGTACTTCCTCTACGGCCAAGGCGAGACCACCGAC GACCACGCCGTCAAGGAGCACCCCCTGGGCGATGTCCAGTGGACCAGTGCCTGCCGCCCGCAGACGACACGCGCC CACAGCCGCAGCACGTCGCAGTCGCGGCGCATGACGCAGCTCAGCGAGTCTTCAGTTGACTAG
Transcript	>OphauB2\|5841 ATGAGCGGCGGCTGGCTCGGCGCCTGTGCGGGCTTCATTGCTCCCGTCTTTATTGTCCTGTCTCCCATCCTGTCC TATGGCGACCAGGCGCTGTCGATGCGGCGCAACAAGTCGAGTGCAGGCTTCTCGCTCGACATTCCGCTAATCATG CTCGTTGCCTCGCTCTTTAGAATCTTTTACTGGCCCGGTGCTCGCTTCGATGCAAGTCTGCTGGCCCAGTCGCTC ATCATGGTGGCGATGCAGCTGCTGCTGCTCAAGATTGCTCTCGACCATCGTCCGCCGCCCTCGTCCAAGGGAGGC GAAGCTGCTGTGCCCTTTGCCGGTGTCCAGAGAAGCAGTCTGTTTACGGCGCAGCGGCCATATAACTTTTGGCAG TGGAGGTCGCCCAAGCCATATTGGCACTTTTTGCTCTATCTCGCGAGCGGCCTCATCATCTGCCAGCTCGTCTTG GCGCCCATGTCCCCCGTCTACTCGGCCTATTCAATAGCCATTGGCTACATTGGCCTCTCGGTCGAGGCAACGCTT CCCATTCCGCAGATTCTCGCCAACTCGCAGTCGCGCTCCTGTAAAGGCTTCCGTCTATCAGTCTTGGTGGCCTGG CTGGGCGGAGATGCCATGAAGATTTTCTGGTTCTTCACCACCACTACCGAGATTCCCCTGGCCTTTAAGATTTGC GGCATCTTCCAAGCCGCATGCGATTGCCTTCTTGGCGCCCAGTACTTCCTCTACGGCCAAGGCGAGACCACCGAC GACCACGCCGTCAAGGAGCACCCCCTGGGCGATGTCCAGTGGACCAGTGCCTGCCGCCCGCAGACGACACGCGCC CACAGCCGCAGCACGTCGCAGTCGCGGCGCATGACGCAGCTCAGCGAGTCTTCAGTTGACTAG
Gene	>OphauB2\|5841 ATGAGCGGCGGCTGGCTCGGCGCCTGTGCGGGCTTCATTGCTCCCGTCTTTATTGTCCTGTCTCCCATCCTGTCC TATGGCGACCAGGCGCTGTCGATGCGGCGCAACAAGTCGAGTGCAGGCTTCTCGCTCGACATTCCGCTAATCATG CTCGTTGCCTCGCTCTTTAGGTACGCAGCTGCACGAGGGGCGCACGCAGCTTGCCCGCCATGGCTGACTGTTGTG TGGACGCGCTAGAATCTTTTACTGGCCCGGTGCTCGCTTCGATGCAAGTCTGCTGGCCCAGTCGCTCATCATGGT GGCGATGCAGCTGCTGCTGCTCAAGATTGCTCTCGACCATCGTCCGCCGCCCTCGTCCAAGGGAGGCGAAGCTGC TGTGCCCTTTGCCGGTGTCCAGAGAAGCAGTCTGTTTACGGCGCAGCGGCCATATAACTTTTGGCAGTGGAGGTC GCCCAAGCCGTCAGTCTTGTCTTGCCCGGCTTGTGCTCGCCTCGAAGCTCTCTACTGACGCTTTGCGGGCCATGT CGTCAAGCACAAGCTGTACAGATATTGGCACTTTTTGCTCTATCTCGCGAGCGGCCTCATCATCTGCCAGCTCGT CTTGGCGCCCATGTCCCCCGTCTACTCGGCCTATTCAATAGCCATTGGCTACATTGGCCTCTCGGTCGAGGCAAC GCTTCCCATTCCGCAGATTCTCGCCAACTCGCAGTCGCGCTCCTGTAAAGGCTTCCGTCTATCAGTCTTGGTGGC CTGGCTGGGCGGAGATGCCATGAAGATTTTCTGGTTCTTCACCACCACTACCGAGATTCCCCTGGCCTTTAAGAT TTGCGGCATCTTCCAAGCCGCATGCGATTGCCTTCTTGGCGCCCAGTACTTCCTCTACGGCCAAGGCGAGACCAC CGACGACCACGCCGTCAAGGAGCACCCCCTGGGCGATGTCCAGTGGACCAGTGCCTGCCGCCCGCAGACGACACG CGCCCACAGCCGCAGCACGTCGCAGTCGCGGCGCATGACGCAGCTCAGCGAGTCTTCAGTTGACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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