© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|5801 |
| Gene name | |
| Location | Contig_48:113608..114603 |
| Strand | - |
| Gene length (bp) | 995 |
| Transcript length (bp) | 858 |
| Coding sequence length (bp) | 858 |
| Protein length (aa) | 286 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02900 | LigB | Catalytic LigB subunit of aromatic ring-opening dioxygenase | 2.1E-34 | 8 | 264 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7XA48|DODA_PORGR | 4,5-DOPA dioxygenase extradiol OS=Portulaca grandiflora GN=DODA PE=1 SV=1 | 44 | 257 | 1.0E-32 |
| sp|Q70FG7|DODA_BETVU | 4,5-DOPA dioxygenase extradiol OS=Beta vulgaris GN=DODA PE=1 SV=1 | 9 | 276 | 2.0E-32 |
| sp|Q949R4|DIOXL_ARATH | Extradiol ring-cleavage dioxygenase OS=Arabidopsis thaliana GN=LIGB PE=2 SV=1 | 9 | 255 | 5.0E-31 |
| sp|I3PFJ3|DOD1U_BETVU | 4,5-DOPA dioxygenase extradiol 1 OS=Beta vulgaris GN=DODA1 PE=2 SV=1 | 46 | 263 | 3.0E-28 |
| sp|I3PFJ9|DOD1W_BETVU | 4,5-DOPA dioxygenase extradiol 1 OS=Beta vulgaris GN=DODA1 PE=2 SV=1 | 46 | 263 | 3.0E-28 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7XA48|DODA_PORGR | 4,5-DOPA dioxygenase extradiol OS=Portulaca grandiflora GN=DODA PE=1 SV=1 | 44 | 257 | 1.0E-32 |
| sp|Q70FG7|DODA_BETVU | 4,5-DOPA dioxygenase extradiol OS=Beta vulgaris GN=DODA PE=1 SV=1 | 9 | 276 | 2.0E-32 |
| sp|Q949R4|DIOXL_ARATH | Extradiol ring-cleavage dioxygenase OS=Arabidopsis thaliana GN=LIGB PE=2 SV=1 | 9 | 255 | 5.0E-31 |
| sp|I3PFJ3|DOD1U_BETVU | 4,5-DOPA dioxygenase extradiol 1 OS=Beta vulgaris GN=DODA1 PE=2 SV=1 | 46 | 263 | 3.0E-28 |
| sp|I3PFJ9|DOD1W_BETVU | 4,5-DOPA dioxygenase extradiol 1 OS=Beta vulgaris GN=DODA1 PE=2 SV=1 | 46 | 263 | 3.0E-28 |
| sp|B6F0W8|DODA_MIRJA | 4,5-DOPA dioxygenase extradiol OS=Mirabilis jalapa GN=DOD PE=1 SV=1 | 46 | 255 | 2.0E-24 |
| sp|P24197|YGID_ECOLI | 4,5-DOPA dioxygenase extradiol OS=Escherichia coli (strain K12) GN=ygiD PE=1 SV=3 | 5 | 259 | 1.0E-23 |
| sp|O74741|DIOXL_SCHPO | 4,5-DOPA dioxygenase extradiol-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1709.16c PE=3 SV=2 | 45 | 259 | 4.0E-23 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008198 | ferrous iron binding | Yes |
| GO:0006725 | cellular aromatic compound metabolic process | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0046872 | metal ion binding | No |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0008152 | metabolic process | No |
| GO:0005488 | binding | No |
| GO:0008150 | biological_process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0005506 | iron ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0043169 | cation binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|5801 MPTAPVVALSHGGGPLPILGDPSHKSIIYSLKHRIPRILNLGTPLQPQAIILVTAHWQTATPHVSSSAQHELLYD YSNFPPESYSLKYPAPGSPAIAQKVVDAFTAAGVKDPRLDPDRPWDHGVFVPLTLIHPQAQIPIVQVSVLQGEDV AEHMRMGEALRSLREQNIAVIGSGFASLHNLQTMRDLRQVSHEERAKFKAQSDEWNDALTNAVKAEKKDRRHHLE KWRKMPHADKMHPPNGGEHFMPLLVCAGAADDGEEMRSYKDEYLGMDILTYYWGGAHHGD* |
| Coding | >OphauB2|5801 ATGCCTACTGCACCAGTTGTTGCGCTTTCGCATGGTGGAGGCCCCCTCCCCATCCTCGGCGACCCAAGCCACAAA TCAATCATCTACTCTCTCAAGCACCGCATCCCTCGCATCCTCAACCTCGGCACCCCCCTCCAGCCCCAAGCCATC ATCCTCGTCACCGCCCACTGGCAAACCGCAACCCCCCACGTCTCTTCATCTGCCCAGCACGAGCTCCTCTACGAC TACTCCAACTTCCCCCCCGAGTCCTACTCCCTCAAGTATCCCGCTCCCGGCTCCCCCGCCATTGCCCAAAAAGTC GTCGACGCCTTTACCGCCGCCGGCGTAAAGGATCCCCGTCTTGACCCCGACCGCCCCTGGGACCACGGCGTCTTT GTCCCGCTTACCCTTATCCACCCACAGGCCCAGATCCCAATCGTCCAGGTCTCGGTCCTTCAGGGCGAAGACGTG GCTGAGCACATGCGCATGGGCGAGGCCCTGCGTTCCCTTCGCGAGCAAAATATTGCAGTCATTGGCTCGGGCTTT GCCTCGCTGCATAACCTGCAAACTATGCGCGACTTGCGCCAAGTCAGCCATGAGGAGCGCGCAAAGTTCAAGGCT CAGTCGGATGAGTGGAACGATGCCCTCACTAATGCCGTCAAGGCGGAGAAGAAGGACCGCAGACACCACTTGGAA AAGTGGAGAAAGATGCCCCATGCTGATAAAATGCATCCCCCAAATGGCGGCGAACACTTTATGCCCCTCTTGGTC TGTGCTGGAGCTGCTGACGACGGCGAGGAGATGAGGTCCTACAAGGATGAGTATCTCGGCATGGACATTCTGACT TATTACTGGGGAGGCGCCCACCACGGAGACTAG |
| Transcript | >OphauB2|5801 ATGCCTACTGCACCAGTTGTTGCGCTTTCGCATGGTGGAGGCCCCCTCCCCATCCTCGGCGACCCAAGCCACAAA TCAATCATCTACTCTCTCAAGCACCGCATCCCTCGCATCCTCAACCTCGGCACCCCCCTCCAGCCCCAAGCCATC ATCCTCGTCACCGCCCACTGGCAAACCGCAACCCCCCACGTCTCTTCATCTGCCCAGCACGAGCTCCTCTACGAC TACTCCAACTTCCCCCCCGAGTCCTACTCCCTCAAGTATCCCGCTCCCGGCTCCCCCGCCATTGCCCAAAAAGTC GTCGACGCCTTTACCGCCGCCGGCGTAAAGGATCCCCGTCTTGACCCCGACCGCCCCTGGGACCACGGCGTCTTT GTCCCGCTTACCCTTATCCACCCACAGGCCCAGATCCCAATCGTCCAGGTCTCGGTCCTTCAGGGCGAAGACGTG GCTGAGCACATGCGCATGGGCGAGGCCCTGCGTTCCCTTCGCGAGCAAAATATTGCAGTCATTGGCTCGGGCTTT GCCTCGCTGCATAACCTGCAAACTATGCGCGACTTGCGCCAAGTCAGCCATGAGGAGCGCGCAAAGTTCAAGGCT CAGTCGGATGAGTGGAACGATGCCCTCACTAATGCCGTCAAGGCGGAGAAGAAGGACCGCAGACACCACTTGGAA AAGTGGAGAAAGATGCCCCATGCTGATAAAATGCATCCCCCAAATGGCGGCGAACACTTTATGCCCCTCTTGGTC TGTGCTGGAGCTGCTGACGACGGCGAGGAGATGAGGTCCTACAAGGATGAGTATCTCGGCATGGACATTCTGACT TATTACTGGGGAGGCGCCCACCACGGAGACTAG |
| Gene | >OphauB2|5801 ATGCCTACTGCACCAGTTGTTGCGCTTTCGCATGGTGGAGGTGAGTCTATTACTGCTTCAACCTCGTCTGCCCGA GCATGTGCCCACCCCAACCGTGATATTCTTTCATCAACGATAAACCAACACTCTTCATCACACCCCAAAACAAAA CCTCACTAACCCATTCCCCCCATCTAGGCCCCCTCCCCATCCTCGGCGACCCAAGCCACAAATCAATCATCTACT CTCTCAAGCACCGCATCCCTCGCATCCTCAACCTCGGCACCCCCCTCCAGCCCCAAGCCATCATCCTCGTCACCG CCCACTGGCAAACCGCAACCCCCCACGTCTCTTCATCTGCCCAGCACGAGCTCCTCTACGACTACTCCAACTTCC CCCCCGAGTCCTACTCCCTCAAGTATCCCGCTCCCGGCTCCCCCGCCATTGCCCAAAAAGTCGTCGACGCCTTTA CCGCCGCCGGCGTAAAGGATCCCCGTCTTGACCCCGACCGCCCCTGGGACCACGGCGTCTTTGTCCCGCTTACCC TTATCCACCCACAGGCCCAGATCCCAATCGTCCAGGTCTCGGTCCTTCAGGGCGAAGACGTGGCTGAGCACATGC GCATGGGCGAGGCCCTGCGTTCCCTTCGCGAGCAAAATATTGCAGTCATTGGCTCGGGCTTTGCCTCGCTGCATA ACCTGCAAACTATGCGCGACTTGCGCCAAGTCAGCCATGAGGAGCGCGCAAAGTTCAAGGCTCAGTCGGATGAGT GGAACGATGCCCTCACTAATGCCGTCAAGGCGGAGAAGAAGGACCGCAGACACCACTTGGAAAAGTGGAGAAAGA TGCCCCATGCTGATAAAATGCATCCCCCAAATGGCGGCGAACACTTTATGCCCCTCTTGGTCTGTGCTGGAGCTG CTGACGACGGCGAGGAGATGAGGTCCTACAAGGATGAGTATCTCGGCATGGACATTCTGACTTATTACTGGGGAG GCGCCCACCACGGAGACTAG |