© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauB2|5726 |
| Gene name | |
| Location | Contig_47:29546..31188 |
| Strand | + |
| Gene length (bp) | 1642 |
| Transcript length (bp) | 1581 |
| Coding sequence length (bp) | 1581 |
| Protein length (aa) | 527 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05653 | Mg_trans_NIPA | Magnesium transporter NIPA | 2.2E-16 | 15 | 308 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8RWF4|NIPA8_ARATH | Probable magnesium transporter NIPA8 OS=Arabidopsis thaliana GN=At3g26670 PE=2 SV=1 | 11 | 305 | 1.0E-12 |
| sp|B3LFA3|NIPA2_ARATH | Probable magnesium transporter NIPA2 OS=Arabidopsis thaliana GN=At4g13800 PE=2 SV=1 | 59 | 308 | 5.0E-09 |
| sp|Q9LIR9|NIPA1_ARATH | Probable magnesium transporter NIPA1 OS=Arabidopsis thaliana GN=At3g23870 PE=2 SV=1 | 54 | 308 | 2.0E-08 |
| sp|Q9LNK7|NIPA3_ARATH | Probable magnesium transporter NIPA3 OS=Arabidopsis thaliana GN=At1g34470 PE=2 SV=1 | 55 | 366 | 4.0E-06 |
| sp|Q5RD30|NPAL3_PONAB | NIPA-like protein 3 OS=Pongo abelii GN=NIPAL3 PE=2 SV=1 | 15 | 354 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0015693 | magnesium ion transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0015095 | magnesium ion transmembrane transporter activity | Yes |
| GO:0006811 | ion transport | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0006812 | cation transport | No |
| GO:0008150 | biological_process | No |
| GO:0003674 | molecular_function | No |
| GO:0030001 | metal ion transport | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006810 | transport | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 59 | 81 | 22 |
| 3 | 86 | 105 | 19 |
| 4 | 112 | 134 | 22 |
| 5 | 152 | 174 | 22 |
| 6 | 231 | 248 | 17 |
| 7 | 258 | 280 | 22 |
| 8 | 285 | 307 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|5726 MSSLGGLSPGGSIALGIVVGLMSTSVQSLGLTLQRKSHMLEDEKGPHDVRRPPYLRRRWQLGMAMFIVANLLGST VQISTLPLPVLSTLQAAGLVFNSICATLILSEPFTRWSLCGTVLVTTGAVLIGIFGAIPSPAHNLDQLLHLMARK PFIIWMILQAIFVIATAVITDLVNKTSSISHNSRFRLVRGILYGVISGDLSAHALLFAKSAVELIIKTIGGNNQF SRWQSWAIVLGLVALALSQLYYLHRGLKLVSTSVLYPLVFCVYNIIAILDGLIYFDQTSLISVLQACLIALGTVI LLSGVLALSWRLSAEQHSPGVGQSTLAPGLGLVEDTEGEEESLVGSESAVEDEDMPAYQTFLPTDGETTPLTSNR KKGFRWAERAEIWGELEDEEEDDAPTSRRRSSTVPSHSETTALLQPASCRADDPGPSATESTLRKPSRRRRRSTG FPGLVARRGRRRDSAASGTFRNMLSLGWLVGRSSRSSLGGASSTDLTDASSRSYIRHDHGNDYSIDSRHDANHSA V* |
| Coding | >OphauB2|5726 ATGTCTTCCTTGGGCGGCCTGTCTCCTGGCGGCAGCATAGCTCTGGGCATTGTTGTGGGGTTGATGTCTACCAGT GTCCAGAGTCTGGGCCTGACACTGCAACGCAAGTCGCACATGCTCGAAGACGAAAAGGGACCTCACGATGTGCGT CGGCCGCCCTACCTGCGACGAAGGTGGCAGCTCGGAATGGCCATGTTCATAGTGGCAAACCTGCTGGGAAGCACC GTGCAGATCTCTACCTTGCCGCTTCCAGTTCTCTCGACTCTCCAAGCTGCCGGTCTAGTCTTCAACTCCATCTGC GCCACCCTGATACTCAGCGAGCCCTTTACGCGATGGTCTCTATGCGGTACCGTGCTCGTCACGACTGGTGCCGTG CTTATTGGCATCTTTGGCGCGATTCCCTCCCCGGCGCACAACTTGGACCAACTTCTGCACCTCATGGCGCGCAAA CCCTTCATCATTTGGATGATTCTCCAGGCCATCTTTGTCATTGCCACCGCCGTCATTACCGATCTTGTCAACAAA ACGTCGAGCATCTCACATAATTCGCGCTTTCGACTGGTGCGAGGCATCCTCTATGGTGTCATCAGCGGCGATCTC TCTGCCCATGCCTTGCTATTTGCCAAATCAGCCGTTGAGCTCATTATCAAAACAATTGGCGGCAACAATCAGTTT TCTCGATGGCAGTCTTGGGCCATTGTTCTAGGCCTTGTGGCGCTGGCACTCAGCCAGCTCTACTACCTGCACCGA GGTCTGAAATTAGTCTCGACCTCGGTTCTCTATCCCCTTGTGTTCTGTGTCTACAATATCATTGCCATCCTCGAC GGATTGATATACTTTGATCAGACGAGCCTTATTTCTGTTTTGCAGGCTTGTCTCATCGCCCTAGGAACGGTCATT CTCTTATCAGGTGTCTTGGCTCTCTCGTGGAGGCTGAGCGCTGAGCAGCATAGTCCAGGAGTCGGTCAGTCCACG CTTGCCCCGGGTCTGGGCCTCGTCGAGGACACCGAGGGCGAGGAAGAATCACTTGTAGGGTCCGAGTCTGCAGTC GAGGATGAGGATATGCCCGCCTATCAGACCTTTCTGCCGACAGATGGCGAAACGACACCATTGACGTCGAATCGC AAAAAAGGCTTCCGTTGGGCCGAGCGTGCCGAAATATGGGGTGAGTTGGAGGACGAGGAAGAAGATGATGCTCCT ACTTCACGGCGCCGGTCTAGCACCGTGCCTAGTCATTCAGAGACGACTGCTCTACTGCAGCCCGCGTCATGTCGG GCAGACGACCCTGGTCCTAGTGCAACCGAGTCGACACTGCGCAAGCCTTCCCGCCGGCGGAGAAGGAGCACCGGA TTTCCCGGTCTCGTCGCGCGCCGAGGCCGGAGGCGAGATTCAGCCGCGTCGGGCACCTTTCGCAATATGCTGTCC CTTGGTTGGCTTGTCGGTCGATCCAGCCGCTCCTCGCTGGGCGGCGCGTCGTCGACTGATTTAACAGATGCTTCT TCTAGGTCATACATACGGCATGACCATGGCAACGATTATTCTATAGACAGCCGCCATGATGCAAATCACTCGGCT GTTTGA |
| Transcript | >OphauB2|5726 ATGTCTTCCTTGGGCGGCCTGTCTCCTGGCGGCAGCATAGCTCTGGGCATTGTTGTGGGGTTGATGTCTACCAGT GTCCAGAGTCTGGGCCTGACACTGCAACGCAAGTCGCACATGCTCGAAGACGAAAAGGGACCTCACGATGTGCGT CGGCCGCCCTACCTGCGACGAAGGTGGCAGCTCGGAATGGCCATGTTCATAGTGGCAAACCTGCTGGGAAGCACC GTGCAGATCTCTACCTTGCCGCTTCCAGTTCTCTCGACTCTCCAAGCTGCCGGTCTAGTCTTCAACTCCATCTGC GCCACCCTGATACTCAGCGAGCCCTTTACGCGATGGTCTCTATGCGGTACCGTGCTCGTCACGACTGGTGCCGTG CTTATTGGCATCTTTGGCGCGATTCCCTCCCCGGCGCACAACTTGGACCAACTTCTGCACCTCATGGCGCGCAAA CCCTTCATCATTTGGATGATTCTCCAGGCCATCTTTGTCATTGCCACCGCCGTCATTACCGATCTTGTCAACAAA ACGTCGAGCATCTCACATAATTCGCGCTTTCGACTGGTGCGAGGCATCCTCTATGGTGTCATCAGCGGCGATCTC TCTGCCCATGCCTTGCTATTTGCCAAATCAGCCGTTGAGCTCATTATCAAAACAATTGGCGGCAACAATCAGTTT TCTCGATGGCAGTCTTGGGCCATTGTTCTAGGCCTTGTGGCGCTGGCACTCAGCCAGCTCTACTACCTGCACCGA GGTCTGAAATTAGTCTCGACCTCGGTTCTCTATCCCCTTGTGTTCTGTGTCTACAATATCATTGCCATCCTCGAC GGATTGATATACTTTGATCAGACGAGCCTTATTTCTGTTTTGCAGGCTTGTCTCATCGCCCTAGGAACGGTCATT CTCTTATCAGGTGTCTTGGCTCTCTCGTGGAGGCTGAGCGCTGAGCAGCATAGTCCAGGAGTCGGTCAGTCCACG CTTGCCCCGGGTCTGGGCCTCGTCGAGGACACCGAGGGCGAGGAAGAATCACTTGTAGGGTCCGAGTCTGCAGTC GAGGATGAGGATATGCCCGCCTATCAGACCTTTCTGCCGACAGATGGCGAAACGACACCATTGACGTCGAATCGC AAAAAAGGCTTCCGTTGGGCCGAGCGTGCCGAAATATGGGGTGAGTTGGAGGACGAGGAAGAAGATGATGCTCCT ACTTCACGGCGCCGGTCTAGCACCGTGCCTAGTCATTCAGAGACGACTGCTCTACTGCAGCCCGCGTCATGTCGG GCAGACGACCCTGGTCCTAGTGCAACCGAGTCGACACTGCGCAAGCCTTCCCGCCGGCGGAGAAGGAGCACCGGA TTTCCCGGTCTCGTCGCGCGCCGAGGCCGGAGGCGAGATTCAGCCGCGTCGGGCACCTTTCGCAATATGCTGTCC CTTGGTTGGCTTGTCGGTCGATCCAGCCGCTCCTCGCTGGGCGGCGCGTCGTCGACTGATTTAACAGATGCTTCT TCTAGGTCATACATACGGCATGACCATGGCAACGATTATTCTATAGACAGCCGCCATGATGCAAATCACTCGGCT GTTTGA |
| Gene | >OphauB2|5726 ATGTCTTCCTTGGGCGGCCTGTCTCCTGGCGGCAGCATAGCTGTACGAGTGCCCTTTATTCCTTGCTCTGCTTAC TGCTCCTTGCTGACACGTCGTGCCGCAGCTGGGCATTGTTGTGGGGTTGATGTCTACCAGTGTCCAGAGTCTGGG CCTGACACTGCAACGCAAGTCGCACATGCTCGAAGACGAAAAGGGACCTCACGATGTGCGTCGGCCGCCCTACCT GCGACGAAGGTGGCAGCTCGGAATGGCCATGTTCATAGTGGCAAACCTGCTGGGAAGCACCGTGCAGATCTCTAC CTTGCCGCTTCCAGTTCTCTCGACTCTCCAAGCTGCCGGTCTAGTCTTCAACTCCATCTGCGCCACCCTGATACT CAGCGAGCCCTTTACGCGATGGTCTCTATGCGGTACCGTGCTCGTCACGACTGGTGCCGTGCTTATTGGCATCTT TGGCGCGATTCCCTCCCCGGCGCACAACTTGGACCAACTTCTGCACCTCATGGCGCGCAAACCCTTCATCATTTG GATGATTCTCCAGGCCATCTTTGTCATTGCCACCGCCGTCATTACCGATCTTGTCAACAAAACGTCGAGCATCTC ACATAATTCGCGCTTTCGACTGGTGCGAGGCATCCTCTATGGTGTCATCAGCGGCGATCTCTCTGCCCATGCCTT GCTATTTGCCAAATCAGCCGTTGAGCTCATTATCAAAACAATTGGCGGCAACAATCAGTTTTCTCGATGGCAGTC TTGGGCCATTGTTCTAGGCCTTGTGGCGCTGGCACTCAGCCAGCTCTACTACCTGCACCGAGGTCTGAAATTAGT CTCGACCTCGGTTCTCTATCCCCTTGTGTTCTGTGTCTACAATATCATTGCCATCCTCGACGGATTGATATACTT TGATCAGACGAGCCTTATTTCTGTTTTGCAGGCTTGTCTCATCGCCCTAGGAACGGTCATTCTCTTATCAGGTGT CTTGGCTCTCTCGTGGAGGCTGAGCGCTGAGCAGCATAGTCCAGGAGTCGGTCAGTCCACGCTTGCCCCGGGTCT GGGCCTCGTCGAGGACACCGAGGGCGAGGAAGAATCACTTGTAGGGTCCGAGTCTGCAGTCGAGGATGAGGATAT GCCCGCCTATCAGACCTTTCTGCCGACAGATGGCGAAACGACACCATTGACGTCGAATCGCAAAAAAGGCTTCCG TTGGGCCGAGCGTGCCGAAATATGGGGTGAGTTGGAGGACGAGGAAGAAGATGATGCTCCTACTTCACGGCGCCG GTCTAGCACCGTGCCTAGTCATTCAGAGACGACTGCTCTACTGCAGCCCGCGTCATGTCGGGCAGACGACCCTGG TCCTAGTGCAACCGAGTCGACACTGCGCAAGCCTTCCCGCCGGCGGAGAAGGAGCACCGGATTTCCCGGTCTCGT CGCGCGCCGAGGCCGGAGGCGAGATTCAGCCGCGTCGGGCACCTTTCGCAATATGCTGTCCCTTGGTTGGCTTGT CGGTCGATCCAGCCGCTCCTCGCTGGGCGGCGCGTCGTCGACTGATTTAACAGATGCTTCTTCTAGGTCATACAT ACGGCATGACCATGGCAACGATTATTCTATAGACAGCCGCCATGATGCAAATCACTCGGCTGTTTGA |