© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|5712 |
| Gene name | |
| Location | Contig_461:131..2200 |
| Strand | + |
| Gene length (bp) | 2069 |
| Transcript length (bp) | 2001 |
| Coding sequence length (bp) | 2001 |
| Protein length (aa) | 667 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02854 | MIF4G | MIF4G domain | 8.5E-15 | 182 | 376 |
| PF02847 | MA3 | MA3 domain | 1.1E-09 | 498 | 618 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13971|SGD1_SCHPO | Suppressor of glycerol defect protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sgd1 PE=3 SV=1 | 178 | 651 | 3.0E-69 |
| sp|Q06132|SGD1_YEAST | Suppressor of glycerol defect protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGD1 PE=1 SV=1 | 2 | 647 | 6.0E-57 |
| sp|Q3UFM5|NOM1_MOUSE | Nucleolar MIF4G domain-containing protein 1 OS=Mus musculus GN=Nom1 PE=1 SV=2 | 173 | 661 | 2.0E-37 |
| sp|Q5C9Z4|NOM1_HUMAN | Nucleolar MIF4G domain-containing protein 1 OS=Homo sapiens GN=NOM1 PE=1 SV=1 | 179 | 664 | 3.0E-36 |
| sp|Q9W020|NOM1_DROME | Nucleolar MIF4G domain-containing protein 1 homolog OS=Drosophila melanogaster GN=CG9004 PE=2 SV=1 | 131 | 661 | 5.0E-30 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|5712 MRNQLAKDEADIAYYKKKLGIKTGRRCSSTAFKEDGLDTLVVEEEEDICHNLPIKNNKKRKQDYDEWLSAKRSKT STHWKYWDSVYRKRNQGEAANSSQYGQDSETPKSVLYGEERALYVKENDEFFADFDAYAEDRDSPLPEGRGNPFA VPLIDVSTASHVVSHRNDVSASHQGNELKLKRQIQGQINRLTDSNILSIVQVVDAIYQQNPRGHVTELLTDAVLA QICKSDNIPDQFFVLTGGFCAAIYKVIGPSFGSHLLRRVVKDFATQYQRASETNQAHMQKASCNIMSLLTQLYTF GIVSCRIIFDYMQRLLQQLSEINVELLLRVCRMSGSLLRRDDRERFRHISDDLARAISYANKSDASSRTKFMMET IQKLSTGKQKIKQVESFGVSEHIVRMRKHLGELKSQSRRLDGLAPMGIGLGDIEGAKEHGKWWLAGASVPNSRGQ VAMARDMVATRQIRDSLSGEDEEDMNLVLPDFYNKARTQGLTTKAQIAIFTALMTANSHEEGYSQYQNLRLKKDE QLEIAHVLVQCVGSEAQYNEYYALVAKQACAKNKRIKFAFQDRVWKLLRSLGEPLFGEEMDEDERRNNEGMKDER RIKHVARFYASLVGNGILSIRILKPLELHEVNKETATFVECFLVSLLRASKRITTSYSRITLVYKN* |
| Coding | >OphauB2|5712 ATGCGCAATCAACTAGCAAAGGACGAGGCCGACATTGCCTACTATAAGAAAAAGCTTGGTATTAAGACGGGGCGC AGGTGTTCGTCTACGGCCTTTAAAGAAGATGGCTTAGATACTCTGGTTGTCGAAGAAGAGGAAGACATCTGCCAC AACTTACCAATAAAAAACAACAAGAAGCGCAAACAGGATTACGACGAATGGCTATCTGCGAAAAGGAGTAAAACG TCAACCCACTGGAAATATTGGGATTCGGTTTATCGTAAAAGGAATCAAGGCGAAGCAGCTAATAGTTCACAATAT GGCCAGGATTCGGAGACGCCAAAGTCGGTATTATATGGCGAAGAGAGAGCCTTATATGTGAAAGAAAACGATGAA TTCTTTGCGGATTTTGATGCGTACGCTGAAGACAGAGACTCTCCACTACCTGAGGGTCGAGGAAATCCCTTTGCG GTCCCTTTGATTGACGTGTCGACTGCTAGTCACGTCGTGTCGCATCGGAATGACGTTTCTGCGTCGCACCAGGGA AACGAACTTAAGCTAAAGCGGCAGATTCAAGGCCAAATCAACCGTCTTACCGACAGCAATATTCTATCCATTGTT CAAGTCGTCGACGCTATATACCAACAAAACCCGCGTGGCCATGTCACTGAGCTCTTGACAGACGCGGTTTTGGCA CAAATCTGCAAGTCAGACAATATCCCTGACCAATTTTTTGTTCTTACAGGGGGCTTTTGCGCTGCAATATACAAG GTTATTGGGCCTAGCTTTGGATCCCATCTATTGCGCAGGGTCGTCAAAGATTTCGCGACTCAATACCAAAGGGCG AGTGAAACGAATCAGGCCCACATGCAGAAGGCGTCGTGCAATATCATGTCTTTACTTACACAGCTTTACACGTTT GGAATTGTGAGCTGTAGGATCATTTTCGATTACATGCAACGGCTACTGCAGCAACTTTCTGAGATTAATGTCGAG CTATTGTTGCGTGTCTGCCGAATGTCTGGCAGTCTTTTACGACGAGATGATAGGGAGAGATTCCGGCATATCTCA GACGACCTAGCCAGAGCCATATCATATGCCAACAAATCCGACGCATCTAGCCGGACAAAGTTCATGATGGAGACA ATTCAAAAACTCAGTACTGGCAAACAGAAGATCAAGCAGGTTGAATCTTTTGGCGTGTCAGAGCATATTGTTCGC ATGAGAAAACACCTTGGCGAGCTCAAGTCTCAATCCAGAAGGCTTGACGGACTCGCGCCAATGGGTATTGGACTC GGCGACATCGAAGGTGCTAAAGAGCATGGTAAATGGTGGCTTGCAGGAGCAAGTGTGCCAAACTCCCGTGGACAG GTTGCCATGGCTAGAGACATGGTGGCAACAAGGCAAATTCGCGACAGTCTAAGCGGTGAAGATGAAGAAGACATG AATTTGGTCCTGCCCGACTTCTACAACAAGGCACGAACCCAGGGGCTAACAACAAAGGCCCAAATTGCTATCTTT ACGGCGCTCATGACTGCCAATAGCCATGAGGAAGGCTACAGCCAATATCAGAACCTCAGGCTTAAAAAAGATGAA CAACTGGAAATTGCACATGTGCTTGTCCAGTGTGTGGGTAGCGAGGCACAGTATAACGAGTACTATGCCTTGGTG GCGAAGCAGGCGTGCGCAAAAAATAAAAGGATCAAATTCGCCTTCCAAGACCGAGTCTGGAAACTACTTCGCAGC CTTGGAGAGCCATTATTTGGCGAAGAAATGGACGAGGACGAAAGACGAAACAATGAGGGGATGAAAGATGAGCGG CGGATAAAGCACGTGGCCCGCTTCTATGCGTCCCTGGTAGGCAATGGCATACTAAGCATTCGCATTCTCAAGCCT CTCGAGCTACACGAGGTGAATAAGGAGACGGCAACCTTTGTTGAATGCTTCCTCGTCAGCCTCCTTCGAGCCAGC AAAAGAATTACCACTTCTTATAGCAGGATTACATTGGTTTATAAGAACTAG |
| Transcript | >OphauB2|5712 ATGCGCAATCAACTAGCAAAGGACGAGGCCGACATTGCCTACTATAAGAAAAAGCTTGGTATTAAGACGGGGCGC AGGTGTTCGTCTACGGCCTTTAAAGAAGATGGCTTAGATACTCTGGTTGTCGAAGAAGAGGAAGACATCTGCCAC AACTTACCAATAAAAAACAACAAGAAGCGCAAACAGGATTACGACGAATGGCTATCTGCGAAAAGGAGTAAAACG TCAACCCACTGGAAATATTGGGATTCGGTTTATCGTAAAAGGAATCAAGGCGAAGCAGCTAATAGTTCACAATAT GGCCAGGATTCGGAGACGCCAAAGTCGGTATTATATGGCGAAGAGAGAGCCTTATATGTGAAAGAAAACGATGAA TTCTTTGCGGATTTTGATGCGTACGCTGAAGACAGAGACTCTCCACTACCTGAGGGTCGAGGAAATCCCTTTGCG GTCCCTTTGATTGACGTGTCGACTGCTAGTCACGTCGTGTCGCATCGGAATGACGTTTCTGCGTCGCACCAGGGA AACGAACTTAAGCTAAAGCGGCAGATTCAAGGCCAAATCAACCGTCTTACCGACAGCAATATTCTATCCATTGTT CAAGTCGTCGACGCTATATACCAACAAAACCCGCGTGGCCATGTCACTGAGCTCTTGACAGACGCGGTTTTGGCA CAAATCTGCAAGTCAGACAATATCCCTGACCAATTTTTTGTTCTTACAGGGGGCTTTTGCGCTGCAATATACAAG GTTATTGGGCCTAGCTTTGGATCCCATCTATTGCGCAGGGTCGTCAAAGATTTCGCGACTCAATACCAAAGGGCG AGTGAAACGAATCAGGCCCACATGCAGAAGGCGTCGTGCAATATCATGTCTTTACTTACACAGCTTTACACGTTT GGAATTGTGAGCTGTAGGATCATTTTCGATTACATGCAACGGCTACTGCAGCAACTTTCTGAGATTAATGTCGAG CTATTGTTGCGTGTCTGCCGAATGTCTGGCAGTCTTTTACGACGAGATGATAGGGAGAGATTCCGGCATATCTCA GACGACCTAGCCAGAGCCATATCATATGCCAACAAATCCGACGCATCTAGCCGGACAAAGTTCATGATGGAGACA ATTCAAAAACTCAGTACTGGCAAACAGAAGATCAAGCAGGTTGAATCTTTTGGCGTGTCAGAGCATATTGTTCGC ATGAGAAAACACCTTGGCGAGCTCAAGTCTCAATCCAGAAGGCTTGACGGACTCGCGCCAATGGGTATTGGACTC GGCGACATCGAAGGTGCTAAAGAGCATGGTAAATGGTGGCTTGCAGGAGCAAGTGTGCCAAACTCCCGTGGACAG GTTGCCATGGCTAGAGACATGGTGGCAACAAGGCAAATTCGCGACAGTCTAAGCGGTGAAGATGAAGAAGACATG AATTTGGTCCTGCCCGACTTCTACAACAAGGCACGAACCCAGGGGCTAACAACAAAGGCCCAAATTGCTATCTTT ACGGCGCTCATGACTGCCAATAGCCATGAGGAAGGCTACAGCCAATATCAGAACCTCAGGCTTAAAAAAGATGAA CAACTGGAAATTGCACATGTGCTTGTCCAGTGTGTGGGTAGCGAGGCACAGTATAACGAGTACTATGCCTTGGTG GCGAAGCAGGCGTGCGCAAAAAATAAAAGGATCAAATTCGCCTTCCAAGACCGAGTCTGGAAACTACTTCGCAGC CTTGGAGAGCCATTATTTGGCGAAGAAATGGACGAGGACGAAAGACGAAACAATGAGGGGATGAAAGATGAGCGG CGGATAAAGCACGTGGCCCGCTTCTATGCGTCCCTGGTAGGCAATGGCATACTAAGCATTCGCATTCTCAAGCCT CTCGAGCTACACGAGGTGAATAAGGAGACGGCAACCTTTGTTGAATGCTTCCTCGTCAGCCTCCTTCGAGCCAGC AAAAGAATTACCACTTCTTATAGCAGGATTACATTGGTTTATAAGAACTAG |
| Gene | >OphauB2|5712 ATGCGCAATCAACTAGCAAAGGACGAGGCCGACATTGCCTACTATAAGAAAAAGCTTGGTATTAAGACGGGGCGC AGGTGTTCGTCTACGGCCTTTAAAGAAGATGGCTTAGATACTCTGGTTGTCGAAGAAGAGGAAGACATCTGCCAC AACTTACCAATAAAAAACAACAAGAAGCGCAAACAGGATTACGACGAATGGCTATCTGCGAAAAGGAGTAAAACG TCAACCCACTGGAAATATTGGGATTCGGTTTATCGTAAAAGGAATCAAGGCGAAGCAGCTAATAGTTCACAATAT GGCCAGGATTCGGAGACGCCAAAGTCGGTATTATATGGCGAAGAGAGAGCCTTATATGTGAAAGAAAACGATGAA TTCTTTGCGGATTTTGATGCGTACGCTGAAGACAGAGACTCTCCACTACCTGAGGGTCGAGGAAATCCCTTTGCG GTCCCTTTGATTGACGTGTCGACTGCTAGTCACGTCGTGTCGCATCGGAATGACGTTTCTGCGTCGCACCAGGGA AACGAACTTAAGCTAAAGCGGCAGATTCAAGGCCAAATCAACCGTCTTACCGACAGCAATATTCTATCCATTGTT CAAGTCGTCGACGCTATATACCAACAAAACCCGCGTGGCCATGTCACTGAGCTCTTGACAGACGCGGTTTTGGCA CAAATCTGCAAGTCAGACAATATCCCTGACCAATTTTTTGTTCTTACAGGGGGCTTTTGCGCTGCAATATACAAG GTTATTGGGCCTAGCTTTGGATCCCATCTATTGCGCAGGGTCGTCAAAGATTTCGCGACTCAATACCAAAGGGCG AGTGAAACGAATCAGGCCCACATGCAGAAGGCGTCGTGCAATATCATGTCTTTACTTACACAGCTTTACACGTTT GGAATTGTGAGCTGTAGGATCATTTTCGATTACATGCAACGGCTACTGCAGCAACTTTCTGAGATTAATGTCGAG CTATTGTTGCGTGTCTGCCGAATGTCTGGCAGTCTTTTACGACGAGATGATAGGGAGAGATTCCGGCATATCTCA GACGACCTAGCCAGAGCCATATCATATGCCAACAAATCCGACGCATCTAGCCGGACAAAGTTCATGATGGAGACA ATTCAAAAACTCAGTACTGGCAAACAGAAGATCAAGCAGGTTGAATCTTTTGGCGTGTCAGAGCATATTGTTCGC ATGAGAAAACACCTTGGCGAGCTCAAGTCTCAATCCAGAAGGCTTGACGGACTCGCGCCAATGGGTATTGGACTC GGCGACATCGAAGGTGCTAAAGAGCATGGTAAATGGTGGCTTGCAGGAGCAAGTGTGCCAAACTCCCGTGGACAG GTTGCCATGGCTAGAGACATGGTGGCAACAAGGCAAATTCGCGACAGTCTAAGCGGTGAAGATGAAGAAGACATG AATTTGGTCCTGCCCGACTTCTACAACAAGGCACGAACCCAGGGGCTAACAACAAAGGCCCAAATTGCTATCTTT ACGGCGCTCATGACTGCCAATAGCCATGAGGAAGGCTACAGCCAATATCAGAACCTCAGGCTTAAAAAAGATGAA CAACTGGAAATTGCACATGTGCTTGTCCAGTGTGTGGGTAGCGAGGCACAGTATAACGAGTACTATGCCTTGGTG GCGAAGCAGGCGTGCGCAAAAAATAAAAGGATCAAATTCGCCTTCCAAGACCGAGTCTGGAAACTACTTCGCAGC CTTGGAGAGCCATTATTTGGCGAAGAAATGGACGAGGACGAAAGACGAAACAATGAGGGGATGAAAGATGAGCGG CGGATAAAGCACGTGGCCCGCTTCTATGCGTCCCTGGTAGGCAATGGCATACTAAGCATTCGCATTCTCAAGCCT CTCGAGCTACACGAGGTGAATAAGGAGACGGCAACCTTTGTTGAATGCTTCCTCGTCAGCCTCCTTCGAGTATGT AGGGTCAAGGCCAAACACCAAGATAACGAGGGCACAGCGATAATTCTTTCTAATATTTTTAGGCCAGCAAAAGAA TTACCACTTCTTATAGCAGGATTACATTGGTTTATAAGAACTAG |