Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|5684
Gene name
LocationContig_46:46231..46990
Strand-
Gene length (bp)759
Transcript length (bp)576
Coding sequence length (bp)576
Protein length (aa) 192

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03248 Rer1 Rer1 family 8.6E-79 18 186

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q498C8|RER1_RAT Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=1 SV=1 20 186 2.0E-66
sp|Q9CQU3|RER1_MOUSE Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1 20 186 2.0E-66
sp|A5PJ65|RER1_BOVIN Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2 20 186 6.0E-66
sp|Q5ZHM5|RER1_CHICK Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1 20 186 1.0E-65
sp|Q5R5U4|RER1_PONAB Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1 20 186 2.0E-65
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q498C8|RER1_RAT Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=1 SV=1 20 186 2.0E-66
sp|Q9CQU3|RER1_MOUSE Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1 20 186 2.0E-66
sp|A5PJ65|RER1_BOVIN Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2 20 186 6.0E-66
sp|Q5ZHM5|RER1_CHICK Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1 20 186 1.0E-65
sp|Q5R5U4|RER1_PONAB Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1 20 186 2.0E-65
sp|O15258|RER1_HUMAN Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1 20 186 2.0E-65
sp|O48670|RER1A_ARATH Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=1 SV=1 1 186 2.0E-65
sp|Q10358|RER1_SCHPO Protein rer1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rer1 PE=3 SV=1 24 186 8.0E-64
sp|Q9ZWI7|RER1C_ARATH Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1 11 189 9.0E-63
sp|O48671|RER1B_ARATH Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=1 SV=2 1 186 2.0E-62
sp|P79003|RER1_SACPS Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1 2 186 1.0E-60
sp|P25560|RER1_YEAST Protein RER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RER1 PE=1 SV=2 1 191 5.0E-59
sp|Q54D10|RER1_DICDI Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1 15 190 2.0E-56
sp|P52879|RER1_CAEEL Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=3 SV=1 25 183 3.0E-52
sp|Q9ZPV7|RER1D_ARATH Protein RER1D OS=Arabidopsis thaliana GN=At2g18240 PE=2 SV=2 21 183 4.0E-50
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GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 36 58 22
2 60 82 22
3 142 164 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|5684
MDMPEPDQTTPFSAFTAQTSKISRKYQALLDQSTPYVLYRWVGTGVALVLFFLRILLVQGWYIVAYALGIYLLNL
FLAFLQPKFDPSNEAIDNEMEDGAVGTLPTQQDDEFKPFIRRLPEFKFWYWATRAICISIFCTFFELFNIPVFWP
VLVMYWMILFVLTMRKQIQHMIKYRYVPFSFGKKSYVKSNH*
Coding >OphauB2|5684
ATGGATATGCCCGAGCCCGATCAGACGACTCCCTTTTCCGCATTTACTGCGCAAACGTCCAAGATATCGCGAAAG
TATCAAGCGCTCCTCGACCAATCGACCCCATATGTCCTATACCGCTGGGTAGGCACAGGCGTGGCGCTGGTGCTC
TTCTTCCTACGCATTTTACTTGTCCAGGGCTGGTATATTGTGGCGTATGCTCTGGGCATCTATCTGCTCAACCTC
TTTCTCGCCTTTCTGCAGCCCAAGTTTGACCCGTCAAACGAAGCCATTGACAATGAAATGGAAGATGGCGCTGTG
GGCACTCTCCCGACGCAGCAGGACGACGAGTTTAAGCCCTTTATCCGCCGTCTTCCCGAGTTCAAGTTTTGGTAC
TGGGCCACACGAGCCATTTGCATCTCTATATTCTGCACCTTTTTCGAGCTCTTCAACATTCCCGTATTTTGGCCG
GTGCTTGTCATGTACTGGATGATTCTCTTTGTCCTGACGATGCGCAAGCAAATCCAGCACATGATCAAGTACCGC
TACGTTCCCTTTTCCTTTGGCAAGAAGAGCTATGTCAAGAGCAACCACTAG
Transcript >OphauB2|5684
ATGGATATGCCCGAGCCCGATCAGACGACTCCCTTTTCCGCATTTACTGCGCAAACGTCCAAGATATCGCGAAAG
TATCAAGCGCTCCTCGACCAATCGACCCCATATGTCCTATACCGCTGGGTAGGCACAGGCGTGGCGCTGGTGCTC
TTCTTCCTACGCATTTTACTTGTCCAGGGCTGGTATATTGTGGCGTATGCTCTGGGCATCTATCTGCTCAACCTC
TTTCTCGCCTTTCTGCAGCCCAAGTTTGACCCGTCAAACGAAGCCATTGACAATGAAATGGAAGATGGCGCTGTG
GGCACTCTCCCGACGCAGCAGGACGACGAGTTTAAGCCCTTTATCCGCCGTCTTCCCGAGTTCAAGTTTTGGTAC
TGGGCCACACGAGCCATTTGCATCTCTATATTCTGCACCTTTTTCGAGCTCTTCAACATTCCCGTATTTTGGCCG
GTGCTTGTCATGTACTGGATGATTCTCTTTGTCCTGACGATGCGCAAGCAAATCCAGCACATGATCAAGTACCGC
TACGTTCCCTTTTCCTTTGGCAAGAAGAGCTATGTCAAGAGCAACCACTAG
Gene >OphauB2|5684
ATGGATATGCCCGAGCCCGATCAGACGACTCCCTTTTCCGCATTTACTGCGCAAACGTCCAAGATATCGCGAGTA
TGATGGAGCGGCGCTCTTGGGGAATGGAGTCTTATTGTGGAGCTGACAGAAGCCATGCAGAAGTATCAAGCGCTC
CTCGACCAATCGACCCCATATGTCCTATACCGCTGGGTAGGCACAGGCGTGGCGCTGGTGCTCTTCTTCCTACGC
ATTTTACTTGTCCAGGGCTGGTATATTGGCAAGTCTTGCATCTCCTTGTACAATGCTAGCGGGCCACGGGGTAAC
AGGGCTAACATGAGGGCATGTACCAGTGGCGTATGCTCTGGGCATCTATCTGCTCAACCTCTTTCTCGCCTTTCT
GCAGCCCAAGTTTGACCCGTCAAACGAAGCCATTGACAATGAAATGGAAGATGGCGCTGTGGGCACTCTCCCGAC
GCAGCAGGACGACGAGTTTAAGCCCTTTATCCGCCGTCTTCCCGAGTTCAAGTTTTGGTACTGGGCCACACGAGC
CATTTGCATCTCTATATTCTGCACCTTTTTCGAGCTCTTCAACATTCCCGTATTTTGGCCGGTGCTTGTCATGTA
CTGGATGATTCTCTTTGTCCTGACGAGTAGGTTGCCGTGCTCTGCAAGGCGGTTACACAGCTAACTGGTGCAGTG
CGCAAGCAAATCCAGCACATGATCAAGTACCGCTACGTTCCCTTTTCCTTTGGCAAGAAGAGCTATGTCAAGAGC
AACCACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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