© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|5606 |
| Gene name | |
| Location | Contig_45:4541..5636 |
| Strand | - |
| Gene length (bp) | 1095 |
| Transcript length (bp) | 849 |
| Coding sequence length (bp) | 849 |
| Protein length (aa) | 283 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03661 | TMEM33_Pom33 | Transmembrane protein 33/Nucleoporin POM33 | 2.8E-34 | 18 | 256 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|G0S6T0|POM33_CHATD | Nucleoporin POM33 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=POM33 PE=3 SV=1 | 3 | 282 | 2.0E-102 |
| sp|Q12164|POM33_YEAST | Pore membrane protein of 33 kDa OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POM33 PE=1 SV=1 | 3 | 264 | 6.0E-39 |
| sp|Q9Y7Z5|TTS1_SCHPO | Tetra-spanning protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tts1 PE=1 SV=1 | 1 | 262 | 2.0E-31 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 22 | 44 | 22 |
| 2 | 57 | 74 | 17 |
| 3 | 103 | 125 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|5606 MAPPPNASLGLQERLLALAKTLQFAWFVGHLTLITSTIIYAFSWIRMNYYSRSGQTSYRTAFLAAAVTYGIVVFK TQRARAKTNTKLPGGVFGLFADENIQYLVMALVWLFFPQYALALLPYFVYSVFHVATYTRTNLIPIFQPAPAADG SAATQPKPYSGLADTLGNFVKRHYESSMAVVSALEMALWFRVLLSAICLQRRSWILLALYTAFLRARYSQSTHVQ NSVAQLNTRMESLVNAQGTPPVAKQVWEAVKGGLKQFHDGTDFGKFVHKDGAVKKSS* |
| Coding | >OphauB2|5606 ATGGCGCCTCCACCGAATGCTAGTCTTGGGCTGCAGGAGCGGCTGCTTGCGTTGGCCAAGACGCTTCAGTTCGCG TGGTTTGTTGGGCACCTGACGCTCATCACGTCGACGATAATATATGCCTTTTCATGGATCCGCATGAATTATTAT AGTCGCTCGGGCCAGACGTCGTACCGTACGGCTTTTCTCGCTGCTGCCGTGACGTATGGCATCGTTGTCTTCAAG ACGCAACGCGCACGAGCAAAGACGAATACCAAGCTGCCTGGCGGTGTCTTTGGGCTTTTTGCCGATGAAAATATT CAGTATCTGGTCATGGCCTTGGTGTGGCTCTTTTTCCCGCAGTATGCGCTCGCTCTGCTGCCCTATTTTGTCTAC TCCGTCTTCCACGTGGCAACATATACGCGCACCAACCTCATACCCATTTTTCAGCCAGCGCCCGCCGCCGACGGC AGTGCGGCCACACAGCCCAAGCCCTATAGCGGGCTGGCGGATACGCTTGGCAACTTTGTCAAGAGGCACTACGAG TCGTCCATGGCTGTAGTGTCTGCACTGGAAATGGCTCTGTGGTTCCGCGTGCTGCTGTCGGCCATTTGCTTGCAG CGCCGGTCGTGGATCTTGCTTGCTCTGTACACGGCCTTTTTGCGCGCCAGGTATTCCCAGAGCACGCATGTGCAA AACTCGGTGGCGCAGCTTAATACGAGGATGGAGTCGCTGGTCAATGCCCAAGGCACGCCGCCCGTTGCCAAGCAA GTCTGGGAAGCAGTCAAGGGCGGATTGAAGCAGTTTCACGATGGCACTGATTTTGGCAAGTTTGTGCACAAGGAT GGAGCTGTCAAGAAGTCTTCGTGA |
| Transcript | >OphauB2|5606 ATGGCGCCTCCACCGAATGCTAGTCTTGGGCTGCAGGAGCGGCTGCTTGCGTTGGCCAAGACGCTTCAGTTCGCG TGGTTTGTTGGGCACCTGACGCTCATCACGTCGACGATAATATATGCCTTTTCATGGATCCGCATGAATTATTAT AGTCGCTCGGGCCAGACGTCGTACCGTACGGCTTTTCTCGCTGCTGCCGTGACGTATGGCATCGTTGTCTTCAAG ACGCAACGCGCACGAGCAAAGACGAATACCAAGCTGCCTGGCGGTGTCTTTGGGCTTTTTGCCGATGAAAATATT CAGTATCTGGTCATGGCCTTGGTGTGGCTCTTTTTCCCGCAGTATGCGCTCGCTCTGCTGCCCTATTTTGTCTAC TCCGTCTTCCACGTGGCAACATATACGCGCACCAACCTCATACCCATTTTTCAGCCAGCGCCCGCCGCCGACGGC AGTGCGGCCACACAGCCCAAGCCCTATAGCGGGCTGGCGGATACGCTTGGCAACTTTGTCAAGAGGCACTACGAG TCGTCCATGGCTGTAGTGTCTGCACTGGAAATGGCTCTGTGGTTCCGCGTGCTGCTGTCGGCCATTTGCTTGCAG CGCCGGTCGTGGATCTTGCTTGCTCTGTACACGGCCTTTTTGCGCGCCAGGTATTCCCAGAGCACGCATGTGCAA AACTCGGTGGCGCAGCTTAATACGAGGATGGAGTCGCTGGTCAATGCCCAAGGCACGCCGCCCGTTGCCAAGCAA GTCTGGGAAGCAGTCAAGGGCGGATTGAAGCAGTTTCACGATGGCACTGATTTTGGCAAGTTTGTGCACAAGGAT GGAGCTGTCAAGAAGTCTTCGTGA |
| Gene | >OphauB2|5606 ATGGCGCCTCCACCGAATGCTAGTCTTGGGCTGCAGGAGCGGCTGCTTGCGTTGGCCAAGACGCTTCAGTGTAAG CAGAGTTGTGTGCCTGACGGAAGCTTGCAGGCTGTGCATGGAGTTTTTTTGGGGAGCATGCGTGCTAATTATTTT GTCTGGGGGTGAATAGTCGCGTGGTTTGTTGGGTACGTGGACGCTTTTTTTTCTCTGGCCTCGAGTCGCAAGGAC GCCGAGGAGAGATGGTGCTAACGGCAAAGCTTCAACACAGGCACCTGACGCTCATCACGTCGACGATAATATATG CCTTTTCATGGATCCGCATGAATTATTATAGTCGCTCGGGCCAGACGTCGTACCGTACGGCTTTTCTCGCTGCTG CCGTGACGTATGGCATCGTTGTCTTCAAGACGCAACGCGCACGAGCAAAGACGAATACCAAGCTGCCTGGCGGTG TCTTTGGGCTTTTTGCCGATGAAAATATTCAGTATCTGGGTACGTGGGCACATGGCTTGGATGACGGGTTTGGGG CTTTTCTAACAAGTGGTATGCTGCATTATAGTCATGGCCTTGGTGTGGCTCTTTTTCCCGCAGTATGCGCTCGCT CTGCTGCCCTATTTTGTCTACTCCGTCTTCCACGTGGCAACATATACGCGCACCAACCTCATACCCATTTTTCAG CCAGCGCCCGCCGCCGACGGCAGTGCGGCCACACAGCCCAAGCCCTATAGCGGGCTGGCGGATACGCTTGGCAAC TTTGTCAAGAGGCACTACGAGTCGTCCATGGCTGTAGTGTCTGCACTGGAAATGGCTCTGTGGTTCCGCGTGCTG CTGTCGGCCATTTGCTTGCAGCGCCGGTCGTGGATCTTGCTTGCTCTGTACACGGCCTTTTTGCGCGCCAGGTAT TCCCAGAGCACGCATGTGCAAAACTCGGTGGCGCAGCTTAATACGAGGATGGAGTCGCTGGTCAATGCCCAAGGC ACGCCGCCCGTTGCCAAGCAAGTCTGGGAAGCAGTCAAGGGCGGATTGAAGCAGTTTCACGATGGCACTGATTTT GGCAAGTTTGTGCACAAGGATGGAGCTGTCAAGAAGTCTTCGTGA |