© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|5584 |
| Gene name | |
| Location | Contig_44:88353..90013 |
| Strand | - |
| Gene length (bp) | 1660 |
| Transcript length (bp) | 1461 |
| Coding sequence length (bp) | 1461 |
| Protein length (aa) | 487 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03372 | Exo_endo_phos | Endonuclease/Exonuclease/phosphatase family | 4.9E-16 | 14 | 309 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74369|CSS1_SCHPO | Inositol phosphosphingolipids phospholipase C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=css1 PE=1 SV=2 | 10 | 453 | 7.0E-75 |
| sp|P40015|ISC1_YEAST | Inositol phosphosphingolipids phospholipase C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISC1 PE=1 SV=1 | 11 | 455 | 1.0E-60 |
| sp|Q9ET64|NSMA_RAT | Sphingomyelin phosphodiesterase 2 OS=Rattus norvegicus GN=Smpd2 PE=1 SV=1 | 4 | 195 | 2.0E-30 |
| sp|O60906|NSMA_HUMAN | Sphingomyelin phosphodiesterase 2 OS=Homo sapiens GN=SMPD2 PE=1 SV=2 | 4 | 210 | 5.0E-30 |
| sp|O70572|NSMA_MOUSE | Sphingomyelin phosphodiesterase 2 OS=Mus musculus GN=Smpd2 PE=1 SV=1 | 10 | 210 | 2.0E-29 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74369|CSS1_SCHPO | Inositol phosphosphingolipids phospholipase C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=css1 PE=1 SV=2 | 10 | 453 | 7.0E-75 |
| sp|P40015|ISC1_YEAST | Inositol phosphosphingolipids phospholipase C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISC1 PE=1 SV=1 | 11 | 455 | 1.0E-60 |
| sp|Q9ET64|NSMA_RAT | Sphingomyelin phosphodiesterase 2 OS=Rattus norvegicus GN=Smpd2 PE=1 SV=1 | 4 | 195 | 2.0E-30 |
| sp|O60906|NSMA_HUMAN | Sphingomyelin phosphodiesterase 2 OS=Homo sapiens GN=SMPD2 PE=1 SV=2 | 4 | 210 | 5.0E-30 |
| sp|O70572|NSMA_MOUSE | Sphingomyelin phosphodiesterase 2 OS=Mus musculus GN=Smpd2 PE=1 SV=1 | 10 | 210 | 2.0E-29 |
| sp|Q9VZS6|NSMA_DROME | Putative neutral sphingomyelinase OS=Drosophila melanogaster GN=CG12034 PE=2 SV=2 | 17 | 343 | 6.0E-28 |
| sp|O45870|NSMA_CAEEL | Putative neutral sphingomyelinase OS=Caenorhabditis elegans GN=T27F6.6 PE=3 SV=2 | 10 | 214 | 2.0E-25 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 387 | 406 | 19 |
| 2 | 411 | 433 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|5584 MADKDGLPSQVRLLTLNCWGLLYISTLREARLQEIGRRLGQLEPAPDVVCLQECWVESDFAAIREATRTVLPHGK LFRAGVWGAGLGILSRWAVEEAEMHEYRLNGRPTAFWRGDWYVGKGVAWATLRLGPGAGEVMHVLNTHTHAPYEK DAQDSYACHRAAQLWHMAKLLRRAAAQPSFLVVALGDFNMLPLSLPHRILTHRAPVCDAWRIAQPDSSLGPVAHG PEAARGRPVPSAAYNLAVNGATSDGLYNTWRWTRNRQNKLRRGLPCPVDAEALDRRGKRLDYIFFCPRSASPAHG WVVDTVHVALTERHPQLHVSLSDHFAVAATLKLHAPAAKSPTALDVQLAQSLASTAHHGLPRSDLDQLMALIRDY TARELRQRRLRALHFYASLVVWAGCLVAVWFSPRNFVAFILCLVASLVLASGIVDGLLALLFFSSELRCLGEFEH EVRSAAAAAADSRAPDVPEQQSTGNDGDRDSSQSPS* |
| Coding | >OphauB2|5584 ATGGCGGACAAGGACGGGCTGCCAAGCCAAGTGCGGCTGCTGACGCTCAACTGCTGGGGCCTCTTATACATTTCG ACGCTGCGCGAGGCGCGACTGCAAGAGATTGGACGGCGGCTGGGCCAGCTGGAGCCGGCGCCCGACGTGGTTTGT CTGCAGGAATGCTGGGTGGAGAGCGACTTTGCGGCGATTCGGGAGGCGACGCGGACAGTGCTGCCGCACGGCAAG CTGTTTCGGGCGGGCGTGTGGGGCGCCGGGCTGGGTATTTTGAGCCGGTGGGCGGTGGAGGAGGCGGAGATGCAT GAGTATCGGCTCAATGGGCGGCCGACGGCGTTTTGGAGGGGGGATTGGTATGTGGGCAAAGGGGTGGCGTGGGCG ACGCTGAGGTTGGGGCCGGGGGCGGGCGAGGTGATGCACGTGTTGAATACGCATACACATGCCCCCTACGAAAAA GACGCCCAAGACTCATACGCATGCCACCGCGCCGCCCAGCTCTGGCACATGGCCAAGCTGCTGCGTCGCGCCGCC GCCCAGCCCAGCTTCCTCGTGGTGGCGCTGGGCGACTTCAACATGCTGCCCCTCTCCCTCCCGCACCGCATCCTG ACGCACCGCGCGCCCGTCTGCGACGCCTGGCGCATTGCACAGCCCGACAGCTCGCTGGGCCCCGTGGCACATGGC CCCGAGGCGGCGCGCGGGCGTCCCGTGCCGTCGGCTGCCTACAACTTGGCCGTCAATGGCGCCACTAGTGATGGC CTGTACAATACTTGGCGCTGGACTAGGAATCGCCAGAACAAGCTCCGTCGCGGCCTGCCCTGTCCTGTTGATGCC GAGGCCCTGGACCGTCGCGGCAAGCGTCTCGACTACATCTTTTTTTGCCCGCGCTCTGCCTCGCCCGCCCACGGC TGGGTCGTTGATACGGTCCACGTGGCTCTCACGGAGCGCCATCCCCAGCTACACGTTTCCCTCTCGGATCACTTT GCCGTGGCTGCTACGCTCAAGCTCCATGCCCCAGCCGCCAAGTCGCCCACCGCTCTCGACGTCCAGCTCGCCCAG TCGCTCGCCTCCACGGCCCACCATGGCCTCCCGCGCAGCGACCTCGACCAGCTCATGGCCCTGATTCGCGACTAC ACGGCCCGCGAGCTTCGCCAGCGTCGTCTGCGCGCCCTGCACTTTTACGCCTCGCTCGTCGTTTGGGCCGGCTGC CTCGTTGCCGTTTGGTTTAGCCCCCGCAACTTTGTCGCTTTTATCCTCTGTCTTGTGGCCAGCCTCGTCCTCGCC TCGGGCATCGTCGACGGCCTGCTTGCCCTGCTCTTCTTTTCGTCGGAGCTGCGCTGCCTCGGCGAGTTTGAGCAC GAGGTGCGCTCTGCTGCTGCTGCTGCTGCTGACAGTCGGGCGCCTGATGTCCCCGAGCAGCAGTCTACTGGCAAC GACGGGGACAGAGATTCCTCCCAGTCACCCTCTTGA |
| Transcript | >OphauB2|5584 ATGGCGGACAAGGACGGGCTGCCAAGCCAAGTGCGGCTGCTGACGCTCAACTGCTGGGGCCTCTTATACATTTCG ACGCTGCGCGAGGCGCGACTGCAAGAGATTGGACGGCGGCTGGGCCAGCTGGAGCCGGCGCCCGACGTGGTTTGT CTGCAGGAATGCTGGGTGGAGAGCGACTTTGCGGCGATTCGGGAGGCGACGCGGACAGTGCTGCCGCACGGCAAG CTGTTTCGGGCGGGCGTGTGGGGCGCCGGGCTGGGTATTTTGAGCCGGTGGGCGGTGGAGGAGGCGGAGATGCAT GAGTATCGGCTCAATGGGCGGCCGACGGCGTTTTGGAGGGGGGATTGGTATGTGGGCAAAGGGGTGGCGTGGGCG ACGCTGAGGTTGGGGCCGGGGGCGGGCGAGGTGATGCACGTGTTGAATACGCATACACATGCCCCCTACGAAAAA GACGCCCAAGACTCATACGCATGCCACCGCGCCGCCCAGCTCTGGCACATGGCCAAGCTGCTGCGTCGCGCCGCC GCCCAGCCCAGCTTCCTCGTGGTGGCGCTGGGCGACTTCAACATGCTGCCCCTCTCCCTCCCGCACCGCATCCTG ACGCACCGCGCGCCCGTCTGCGACGCCTGGCGCATTGCACAGCCCGACAGCTCGCTGGGCCCCGTGGCACATGGC CCCGAGGCGGCGCGCGGGCGTCCCGTGCCGTCGGCTGCCTACAACTTGGCCGTCAATGGCGCCACTAGTGATGGC CTGTACAATACTTGGCGCTGGACTAGGAATCGCCAGAACAAGCTCCGTCGCGGCCTGCCCTGTCCTGTTGATGCC GAGGCCCTGGACCGTCGCGGCAAGCGTCTCGACTACATCTTTTTTTGCCCGCGCTCTGCCTCGCCCGCCCACGGC TGGGTCGTTGATACGGTCCACGTGGCTCTCACGGAGCGCCATCCCCAGCTACACGTTTCCCTCTCGGATCACTTT GCCGTGGCTGCTACGCTCAAGCTCCATGCCCCAGCCGCCAAGTCGCCCACCGCTCTCGACGTCCAGCTCGCCCAG TCGCTCGCCTCCACGGCCCACCATGGCCTCCCGCGCAGCGACCTCGACCAGCTCATGGCCCTGATTCGCGACTAC ACGGCCCGCGAGCTTCGCCAGCGTCGTCTGCGCGCCCTGCACTTTTACGCCTCGCTCGTCGTTTGGGCCGGCTGC CTCGTTGCCGTTTGGTTTAGCCCCCGCAACTTTGTCGCTTTTATCCTCTGTCTTGTGGCCAGCCTCGTCCTCGCC TCGGGCATCGTCGACGGCCTGCTTGCCCTGCTCTTCTTTTCGTCGGAGCTGCGCTGCCTCGGCGAGTTTGAGCAC GAGGTGCGCTCTGCTGCTGCTGCTGCTGCTGACAGTCGGGCGCCTGATGTCCCCGAGCAGCAGTCTACTGGCAAC GACGGGGACAGAGATTCCTCCCAGTCACCCTCTTGA |
| Gene | >OphauB2|5584 ATGGCGGACAAGGACGGGCTGCCAAGCCAAGTGCGGCTGCTGACGCTCAACTGCTGGGGCCTCTTATACATTTCG ACGCTGCGCGAGGCGCGACTGCAAGAGATTGGACGGCGGCTGGGCCAGCTGGAGCCGGCGCCCGACGTGGTTTGT CTGCAGGAATGCTGGGTGGAGAGCGACTTTGCGGCGATTCGGGAGGCGACGCGGACAGTGCTGCCGCACGGCAAG CTGTTTCGGGCGGGCGTGTGGGGCGCCGGGCTGGGTATTTTGAGCCGGTGGGCGGTGGAGGAGGCGGAGATGCAT GAGTATCGGCTCAATGGGCGGCCGACGGCGTTTTGGAGGGGGGATTGGTATGTGGGCAAAGGGGTGGCGTGGGCG ACGCTGAGGTTGGGGCCGGGGGCGGGCGAGGTGATGCACGTGTTGAATACGCATGTGAGTTTTTTTTCCCCATTT CTTTTCTCTATAAATTGTTTTGGTGGTGGTTACGATGGCTGTGGTTGTGGTGATGGCGGTTGTGGCGATGGTGGT GATGGTGATGGTGGTGATGGTGGTGATGGTGTTTATGGTGTTTATGGTGGTGAATGCGTCTATGGTGTTTTGTGG CGACGACGGCCCAACTGACAGCTACAAGACACATGCCCCCTACGAAAAAGACGCCCAAGACTCATACGCATGCCA CCGCGCCGCCCAGCTCTGGCACATGGCCAAGCTGCTGCGTCGCGCCGCCGCCCAGCCCAGCTTCCTCGTGGTGGC GCTGGGCGACTTCAACATGCTGCCCCTCTCCCTCCCGCACCGCATCCTGACGCACCGCGCGCCCGTCTGCGACGC CTGGCGCATTGCACAGCCCGACAGCTCGCTGGGCCCCGTGGCACATGGCCCCGAGGCGGCGCGCGGGCGTCCCGT GCCGTCGGCTGCCTACAACTTGGCCGTCAATGGCGCCACTAGTGATGGCCTGTACAATACTTGGCGCTGGACTAG GAATCGCCAGAACAAGCTCCGTCGCGGCCTGCCCTGTCCTGTTGATGCCGAGGCCCTGGACCGTCGCGGCAAGCG TCTCGACTACATCTTTTTTTGCCCGCGCTCTGCCTCGCCCGCCCACGGCTGGGTCGTTGATACGGTCCACGTGGC TCTCACGGAGCGCCATCCCCAGCTACACGTTTCCCTCTCGGATCACTTTGCCGTGGCTGCTACGCTCAAGCTCCA TGCCCCAGCCGCCAAGTCGCCCACCGCTCTCGACGTCCAGCTCGCCCAGTCGCTCGCCTCCACGGCCCACCATGG CCTCCCGCGCAGCGACCTCGACCAGCTCATGGCCCTGATTCGCGACTACACGGCCCGCGAGCTTCGCCAGCGTCG TCTGCGCGCCCTGCACTTTTACGCCTCGCTCGTCGTTTGGGCCGGCTGCCTCGTTGCCGTTTGGTTTAGCCCCCG CAACTTTGTCGCTTTTATCCTCTGTCTTGTGGCCAGCCTCGTCCTCGCCTCGGGCATCGTCGACGGCCTGCTTGC CCTGCTCTTCTTTTCGTCGGAGCTGCGCTGCCTCGGCGAGTTTGAGCACGAGGTGCGCTCTGCTGCTGCTGCTGC TGCTGACAGTCGGGCGCCTGATGTCCCCGAGCAGCAGTCTACTGGCAACGACGGGGACAGAGATTCCTCCCAGTC ACCCTCTTGA |