Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|5535
Gene name
LocationContig_43:112993..113441
Strand+
Gene length (bp)448
Transcript length (bp)297
Coding sequence length (bp)297
Protein length (aa) 99

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01679 Pmp3 Proteolipid membrane potential modulator 2.4E-19 8 52

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q4WYA5|PMP3_ASPFU Plasma membrane proteolipid 3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pmp3 PE=3 SV=1 5 56 3.0E-13
sp|Q871V2|PMP3_NEUCR Plasma membrane proteolipid 3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pmp-1 PE=3 SV=1 5 56 1.0E-11
sp|Q4HXT6|PMP3_GIBZE Plasma membrane proteolipid 3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PMP3 PE=3 SV=2 5 56 3.0E-11
sp|Q9C1W4|PMP3_SCHPO Plasma membrane proteolipid 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmp3 PE=3 SV=2 5 56 5.0E-09
sp|Q22702|YCU5_CAEEL UPF0057 membrane protein T23F2.5 OS=Caenorhabditis elegans GN=T23F2.5 PE=3 SV=1 11 56 1.0E-08
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Swissprot ID Swissprot Description Start End E-value
sp|Q4WYA5|PMP3_ASPFU Plasma membrane proteolipid 3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pmp3 PE=3 SV=1 5 56 3.0E-13
sp|Q871V2|PMP3_NEUCR Plasma membrane proteolipid 3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pmp-1 PE=3 SV=1 5 56 1.0E-11
sp|Q4HXT6|PMP3_GIBZE Plasma membrane proteolipid 3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PMP3 PE=3 SV=2 5 56 3.0E-11
sp|Q9C1W4|PMP3_SCHPO Plasma membrane proteolipid 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmp3 PE=3 SV=2 5 56 5.0E-09
sp|Q22702|YCU5_CAEEL UPF0057 membrane protein T23F2.5 OS=Caenorhabditis elegans GN=T23F2.5 PE=3 SV=1 11 56 1.0E-08
sp|P0AE42|YQAE_ECOLI UPF0057 membrane protein YqaE OS=Escherichia coli (strain K12) GN=yqaE PE=3 SV=1 10 53 6.0E-08
sp|P0AE43|YQAE_ECOL6 UPF0057 membrane protein YqaE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yqaE PE=3 SV=1 10 53 6.0E-08
sp|P0AE44|YQAE_ECO57 UPF0057 membrane protein YqaE OS=Escherichia coli O157:H7 GN=yqaE PE=3 SV=1 10 53 6.0E-08
sp|Q9Y068|RIC1_PHYIN Protein Ric1 OS=Phytophthora infestans GN=RIC1 PE=3 SV=1 10 52 7.0E-08
sp|P34655|YOT0_CAEEL UPF0057 membrane protein ZK632.10 OS=Caenorhabditis elegans GN=ZK632.10 PE=3 SV=2 7 52 1.0E-07
sp|Q6BVN0|PMP3_DEBHA Plasma membrane proteolipid 3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PMP3 PE=3 SV=1 16 56 9.0E-07
sp|Q9ZNQ7|RCI2A_ARATH Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1 10 52 2.0E-06
sp|Q0DKW8|LTI6B_ORYSJ Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1 10 51 4.0E-06
sp|A2Y075|LTI6B_ORYSI Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2 10 51 4.0E-06
sp|Q9M095|RC23_ARATH UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=3 SV=1 10 73 7.0E-06
sp|Q9ZNS6|RCI2B_ARATH Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1 10 52 9.0E-06
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GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 24 0.5

Transmembrane Domains

Domain # Start End Length
1 3 25 22
2 35 57 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|5535
MGVVSAVLVVLITIIFPPIGVWAVAGCGMDLFINICLTVLGYLPGHIHAFYIEFVYYDRREQAHQGRFPNGRAAG
VYSENVQSGGLGQGYGTMPPASP*
Coding >OphauB2|5535
ATGGGTGTCGTTTCTGCTGTCCTCGTCGTCCTCATCACCATCATCTTCCCGCCCATTGGCGTGTGGGCCGTGGCA
GGATGTGGAATGGACCTCTTCATCAACATCTGTCTGACAGTCCTGGGCTATCTGCCTGGGCACATCCACGCCTTT
TACATCGAGTTTGTCTACTATGACCGTCGCGAGCAGGCCCACCAAGGCCGCTTCCCCAACGGCCGCGCTGCGGGA
GTCTACTCGGAGAATGTTCAGTCGGGTGGCTTGGGACAGGGCTACGGCACCATGCCTCCTGCCAGCCCCTAG
Transcript >OphauB2|5535
ATGGGTGTCGTTTCTGCTGTCCTCGTCGTCCTCATCACCATCATCTTCCCGCCCATTGGCGTGTGGGCCGTGGCA
GGATGTGGAATGGACCTCTTCATCAACATCTGTCTGACAGTCCTGGGCTATCTGCCTGGGCACATCCACGCCTTT
TACATCGAGTTTGTCTACTATGACCGTCGCGAGCAGGCCCACCAAGGCCGCTTCCCCAACGGCCGCGCTGCGGGA
GTCTACTCGGAGAATGTTCAGTCGGGTGGCTTGGGACAGGGCTACGGCACCATGCCTCCTGCCAGCCCCTAG
Gene >OphauB2|5535
ATGGGTGTCGTTTCTGCTGTCCTCGTCGTCCTCATCACCATCATCTGTGCGTAATGTAGCCTCAGGTCTCCCTCA
GGCCTCGGCCAGGCCTCCCCCTCGGGTCCCCAAATAGGCCCTTGACTAACAGGGTCTCTCAGTCCCGCCCATTGG
CGTGTGGGCCGTGGCAGGATGTGGAATGGGTAAGCCGAGCCAGCAGCTGTCTTTTGCGGCGCGCAGAGCTGACGG
ATCCCCTTTGGCAGACCTCTTCATCAACATCTGTCTGACAGTCCTGGGCTATCTGCCTGGGCACATCCACGCCTT
TTACATCGAGTTTGTCTACTATGACCGTCGCGAGCAGGCCCACCAAGGCCGCTTCCCCAACGGCCGCGCTGCGGG
AGTCTACTCGGAGAATGTTCAGTCGGGTGGCTTGGGACAGGGCTACGGCACCATGCCTCCTGCCAGCCCCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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