Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|5534
Gene name
LocationContig_43:109967..112112
Strand-
Gene length (bp)2145
Transcript length (bp)1857
Coding sequence length (bp)1857
Protein length (aa) 619

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00641 zf-RanBP Zn-finger in Ran binding protein and others 5.7E-11 350 377
PF00641 zf-RanBP Zn-finger in Ran binding protein and others 4.3E-07 428 457
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.9E-08 255 322
PF00929 RNase_T Exonuclease 2.6E-05 19 127

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.04c PE=1 SV=1 8 465 4.0E-121
sp|P32770|NRP1_YEAST Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRP1 PE=1 SV=2 105 377 7.0E-78
sp|P32770|NRP1_YEAST Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRP1 PE=1 SV=2 419 487 4.0E-09
sp|Q8C460|ERI3_MOUSE ERI1 exoribonuclease 3 OS=Mus musculus GN=Eri3 PE=1 SV=1 4 149 3.0E-08
sp|Q5HZL1|ERI2_XENLA ERI1 exoribonuclease 2 OS=Xenopus laevis GN=eri2 PE=2 SV=1 13 160 1.0E-06

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003676 nucleic acid binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|5534
MSAPPQLNVDRYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDANSLEEITHDSALVKPVNTPITPLCTSLTTL
TWEHVRNAGTFRDAISRFDTFATEYLTSKNLDFVFVTLDAWDLRVQLPREARDKAVVLPPYLQHSRTFDLRTEYQ
RWQQHHPESLPFGPSMLSNICAALEVEPVQCSAPIKHNLPFHLQALAPASPRRAMEEAITLARVLRGLIRKSQPP
QDHPDVLTRPMDARADVRAFLSERSKVLHMSGLPHDTTQSELESWFTQFGGRPIAFWTLRTPEQHKPTGTGFAVF
SSHEEAAESLCMNGRALNEKAIEVSPSSSRVLDRAQDILTPFPPSKNRPRPGDWTCPSCGFSNFQRRTACFRCSF
PAMGPGAGGEIAGPSGYGYNYGPPAMMAPPHGGHHGPMGHGGRMGGSGVVPFRAGDWKCGNEVCGYHNFAKNVCC
LRCGASRAGAAVVADSGYPSPMDNSSQYSMSGGSMAGTPAPGPFGSGNSFASGSGYNQHFGGPPSHFLPSGLGGG
AGAYPSALNTQGFGAAPGSHSAGPFDSRAAEAAFQSATNGPASAGPGPTNNFYNNNGENDPFAFLSTGIGGLTVG
GSDARQNGGGAPPSKSPA*
Coding >OphauB2|5534
ATGTCTGCGCCACCGCAGCTCAACGTCGATCGCTACGTCGTTATCCATGTGGCTACGACGTGTGACGAGCATGGA
GTTTACGTCACCAAGGACTCGGCCGAGGTTATTGAGCTTGGATGGATCCTTCTTGATGCAAACTCTCTCGAGGAG
ATTACACACGACAGTGCTCTGGTGAAGCCTGTCAATACTCCAATTACGCCTCTGTGCACGAGCCTCACCACTCTT
ACCTGGGAACATGTGCGGAATGCCGGCACCTTTCGAGATGCCATTTCTCGATTCGACACTTTTGCTACCGAGTAT
CTCACGTCCAAGAACCTCGACTTCGTTTTTGTCACGCTCGATGCTTGGGATCTTCGCGTGCAGCTTCCCAGGGAA
GCTCGTGACAAGGCAGTCGTGCTGCCTCCTTACCTCCAGCACTCGCGAACCTTTGATCTGCGAACCGAATACCAG
CGCTGGCAACAGCATCACCCCGAGTCTCTTCCGTTTGGGCCGTCAATGCTATCCAATATCTGCGCTGCCCTCGAG
GTGGAGCCTGTGCAGTGCAGCGCTCCCATAAAACATAATCTGCCTTTTCATTTGCAGGCCCTCGCTCCCGCCTCG
CCACGCCGCGCCATGGAAGAGGCCATTACCCTTGCTCGCGTGCTGCGAGGGCTGATTCGCAAGTCGCAGCCCCCA
CAGGACCACCCAGATGTCTTGACTAGACCCATGGATGCTAGGGCTGACGTTCGGGCTTTCTTGTCTGAGAGGAGT
AAAGTGCTCCACATGTCGGGGCTTCCCCACGATACCACCCAGTCTGAGCTTGAAAGCTGGTTTACGCAGTTTGGC
GGTCGCCCAATTGCCTTTTGGACGCTGCGCACTCCGGAGCAGCATAAACCAACGGGCACCGGGTTTGCCGTTTTT
TCGTCTCATGAAGAGGCTGCCGAGAGCTTGTGCATGAATGGACGTGCGCTCAACGAAAAGGCCATTGAGGTGTCA
CCCTCGTCGAGCCGGGTTCTAGACCGCGCCCAAGACATACTTACCCCATTTCCACCCAGCAAGAACCGCCCTCGG
CCTGGTGACTGGACCTGCCCGTCGTGCGGCTTCTCCAATTTTCAGCGCCGAACAGCATGCTTCAGATGCTCCTTT
CCTGCCATGGGACCCGGGGCTGGGGGTGAGATTGCGGGCCCTAGCGGATACGGATATAATTATGGCCCTCCTGCC
ATGATGGCTCCTCCCCATGGCGGCCATCACGGCCCAATGGGTCATGGCGGCCGCATGGGAGGCAGTGGTGTAGTG
CCCTTCCGAGCCGGTGATTGGAAATGCGGCAATGAAGTGTGCGGCTACCACAACTTTGCCAAGAATGTCTGCTGT
CTTCGCTGCGGTGCCAGCCGCGCCGGAGCGGCCGTGGTTGCCGACTCGGGGTACCCATCGCCCATGGACAATTCG
TCTCAGTACAGCATGAGCGGTGGCTCCATGGCTGGGACGCCTGCCCCAGGGCCCTTTGGCTCTGGCAATTCATTT
GCATCTGGCTCTGGCTACAACCAGCACTTTGGGGGCCCACCAAGCCATTTCCTACCATCGGGTCTCGGGGGAGGC
GCTGGAGCTTATCCCAGCGCCCTCAACACGCAGGGCTTTGGCGCAGCGCCAGGCTCACACTCTGCTGGGCCCTTT
GATAGCAGGGCTGCCGAAGCTGCCTTCCAGTCTGCAACGAATGGTCCCGCCTCGGCCGGCCCTGGCCCGACCAAC
AACTTTTACAACAATAATGGCGAGAACGATCCCTTTGCCTTTTTGTCGACAGGAATCGGCGGCCTCACGGTGGGA
GGCAGCGATGCCCGACAGAATGGCGGCGGTGCTCCCCCGAGCAAGTCTCCCGCGTAG
Transcript >OphauB2|5534
ATGTCTGCGCCACCGCAGCTCAACGTCGATCGCTACGTCGTTATCCATGTGGCTACGACGTGTGACGAGCATGGA
GTTTACGTCACCAAGGACTCGGCCGAGGTTATTGAGCTTGGATGGATCCTTCTTGATGCAAACTCTCTCGAGGAG
ATTACACACGACAGTGCTCTGGTGAAGCCTGTCAATACTCCAATTACGCCTCTGTGCACGAGCCTCACCACTCTT
ACCTGGGAACATGTGCGGAATGCCGGCACCTTTCGAGATGCCATTTCTCGATTCGACACTTTTGCTACCGAGTAT
CTCACGTCCAAGAACCTCGACTTCGTTTTTGTCACGCTCGATGCTTGGGATCTTCGCGTGCAGCTTCCCAGGGAA
GCTCGTGACAAGGCAGTCGTGCTGCCTCCTTACCTCCAGCACTCGCGAACCTTTGATCTGCGAACCGAATACCAG
CGCTGGCAACAGCATCACCCCGAGTCTCTTCCGTTTGGGCCGTCAATGCTATCCAATATCTGCGCTGCCCTCGAG
GTGGAGCCTGTGCAGTGCAGCGCTCCCATAAAACATAATCTGCCTTTTCATTTGCAGGCCCTCGCTCCCGCCTCG
CCACGCCGCGCCATGGAAGAGGCCATTACCCTTGCTCGCGTGCTGCGAGGGCTGATTCGCAAGTCGCAGCCCCCA
CAGGACCACCCAGATGTCTTGACTAGACCCATGGATGCTAGGGCTGACGTTCGGGCTTTCTTGTCTGAGAGGAGT
AAAGTGCTCCACATGTCGGGGCTTCCCCACGATACCACCCAGTCTGAGCTTGAAAGCTGGTTTACGCAGTTTGGC
GGTCGCCCAATTGCCTTTTGGACGCTGCGCACTCCGGAGCAGCATAAACCAACGGGCACCGGGTTTGCCGTTTTT
TCGTCTCATGAAGAGGCTGCCGAGAGCTTGTGCATGAATGGACGTGCGCTCAACGAAAAGGCCATTGAGGTGTCA
CCCTCGTCGAGCCGGGTTCTAGACCGCGCCCAAGACATACTTACCCCATTTCCACCCAGCAAGAACCGCCCTCGG
CCTGGTGACTGGACCTGCCCGTCGTGCGGCTTCTCCAATTTTCAGCGCCGAACAGCATGCTTCAGATGCTCCTTT
CCTGCCATGGGACCCGGGGCTGGGGGTGAGATTGCGGGCCCTAGCGGATACGGATATAATTATGGCCCTCCTGCC
ATGATGGCTCCTCCCCATGGCGGCCATCACGGCCCAATGGGTCATGGCGGCCGCATGGGAGGCAGTGGTGTAGTG
CCCTTCCGAGCCGGTGATTGGAAATGCGGCAATGAAGTGTGCGGCTACCACAACTTTGCCAAGAATGTCTGCTGT
CTTCGCTGCGGTGCCAGCCGCGCCGGAGCGGCCGTGGTTGCCGACTCGGGGTACCCATCGCCCATGGACAATTCG
TCTCAGTACAGCATGAGCGGTGGCTCCATGGCTGGGACGCCTGCCCCAGGGCCCTTTGGCTCTGGCAATTCATTT
GCATCTGGCTCTGGCTACAACCAGCACTTTGGGGGCCCACCAAGCCATTTCCTACCATCGGGTCTCGGGGGAGGC
GCTGGAGCTTATCCCAGCGCCCTCAACACGCAGGGCTTTGGCGCAGCGCCAGGCTCACACTCTGCTGGGCCCTTT
GATAGCAGGGCTGCCGAAGCTGCCTTCCAGTCTGCAACGAATGGTCCCGCCTCGGCCGGCCCTGGCCCGACCAAC
AACTTTTACAACAATAATGGCGAGAACGATCCCTTTGCCTTTTTGTCGACAGGAATCGGCGGCCTCACGGTGGGA
GGCAGCGATGCCCGACAGAATGGCGGCGGTGCTCCCCCGAGCAAGTCTCCCGCGTAG
Gene >OphauB2|5534
ATGTCTGCGCCACCGCAGCTCAACGTCGATCGCTACGTCGTTATCCATGTGGCTACGACGTGTGACGAGCATGGA
GTTTACGTCACCAAGGACTCGGCCGAGGTTATTGAGCTTGGATGGATCCTTCTTGATGCAAACTCTCTCGAGGAG
GTCAGTCGTCTCCTCAGCAGCTGCCTGTTGCGCCCGACTGACGTCCAGGGTAGATTACACACGACAGTGCTCTGG
TGAAGCCTGTCAATACTCCAATTACGCCTCTGTGCAGTATGCCACTCCAATGCGCCTTTTATATTCCTTGTCCCG
ACCCTTGTTGTCGACCATGGCTTCTTGAAGCAGCCTAGATAGCAGTCGTTGCGCTTTGTCAATTCTCGTCCCCCA
GACCCTTCAAATCCCCACTCCCCTGTCTGACAAGGCTGACAAGTGCTCTCTTCTTTTAGCGAGCCTCACCACTCT
TACCTGGGAACATGTGCGGAATGCCGGCACCTTTCGAGATGCCATTTCTCGATTCGACACTTTTGCTACCGAGTA
TCTCACGTCCAAGAACCTCGACTTCGTTTTTGTCACGCTCGATGCTTGGGATCTTCGCGTGCAGCTTCCCAGGGA
AGCTCGTGACAAGGCAGTCGTGCTGCCTCCTTACCTCCAGCACTCGCGAACCTTTGATCTGCGAACCGAATACCA
GCGCTGGCAACAGCATCACCCCGAGTCTCTTCCGTTTGGGCCGTCAATGCTATCCAATATCTGCGCTGCCCTCGA
GGTGGAGCCTGTGCAGTGCAGCGCTCCCATAAAACATAATCTGCCTTTTCATTTGCAGGCCCTCGCTCCCGCCTC
GCCACGCCGCGCCATGGAAGAGGCCATTACCCTTGCTCGCGTGCTGCGAGGGCTGATTCGCAAGTCGCAGCCCCC
ACAGGACCACCCAGATGTCTTGACTAGACCCATGGATGCTAGGGCTGACGTTCGGGCTTTCTTGTCTGAGAGGAG
TAAAGTGCTCCACATGTCGGGGCTTCCCCACGATACCACCCAGTCTGAGCTTGAAAGCTGGTTTACGCAGTTTGG
CGGTCGCCCAATTGCCTTTTGGACGCTGCGCACTCCGGAGCAGCATAAACCAACGGGCACCGGGTTTGCCGTTTT
TTCGTCTCATGAAGAGGTATATTCAACTTTTGCCTCTGAATTACACGTCGTGTAGACTGACTAGAATGATTTATG
CAGGCTGCCGAGAGCTTGTGCATGAATGGACGTGCGCTCAACGAAAAGGCCATTGAGGTGTCACCCTCGTCGAGC
CGGGTTCTAGACCGCGCCCAAGACATACTTACCCCATTTCCACCCAGCAAGAACCGCCCTCGGCCTGGTGACTGG
ACCTGCCCGTCGTGCGGCTTCTCCAATTTTCAGCGCCGAACAGCATGCTTCAGATGCTCCTTTCCTGCCATGGGA
CCCGGGGCTGGGGGTGAGATTGCGGGCCCTAGCGGATACGGATATAATTATGGCCCTCCTGCCATGATGGCTCCT
CCCCATGGCGGCCATCACGGCCCAATGGGTCATGGCGGCCGCATGGGAGGCAGTGGTGTAGTGCCCTTCCGAGCC
GGTGATTGGAAATGCGGCAATGAAGTGTGCGGCTACCACAACTTTGCCAAGAATGTCTGCTGTCTTCGCTGCGGT
GCCAGCCGCGCCGGAGCGGCCGTGGTTGCCGACTCGGGGTACCCATCGCCCATGGACAATTCGTCTCAGTACAGC
ATGAGCGGTGGCTCCATGGCTGGGACGCCTGCCCCAGGGCCCTTTGGCTCTGGCAATTCATTTGCATCTGGCTCT
GGCTACAACCAGCACTTTGGGGGCCCACCAAGCCATTTCCTACCATCGGGTCTCGGGGGAGGCGCTGGAGCTTAT
CCCAGCGCCCTCAACACGCAGGGCTTTGGCGCAGCGCCAGGCTCACACTCTGCTGGGCCCTTTGATAGCAGGGCT
GCCGAAGCTGCCTTCCAGTCTGCAACGAATGGTCCCGCCTCGGCCGGCCCTGGCCCGACCAACAACTTTTACAAC
AATAATGGCGAGAACGATCCCTTTGCCTTTTTGTCGACAGGAATCGGCGGCCTCACGGTGGGAGGCAGCGATGCC
CGACAGAATGGCGGCGGTGCTCCCCCGAGCAAGTCTCCCGCGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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