Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|5462
Gene name
LocationContig_42:77348..78454
Strand+
Gene length (bp)1106
Transcript length (bp)933
Coding sequence length (bp)933
Protein length (aa) 311

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00808 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone 2.5E-08 88 151
PF00125 Histone Core histone H2A/H2B/H3/H4 1.0E-06 45 150

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1 78 178 2.0E-15
sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=DPB4 PE=3 SV=1 78 157 8.0E-15
sp|Q750A4|DPB4_ASHGO DNA polymerase epsilon subunit D OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DPB4 PE=3 SV=1 78 195 6.0E-12
sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=1 SV=1 84 191 1.0E-11
sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1 84 191 2.0E-11
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Swissprot ID Swissprot Description Start End E-value
sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1 78 178 2.0E-15
sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=DPB4 PE=3 SV=1 78 157 8.0E-15
sp|Q750A4|DPB4_ASHGO DNA polymerase epsilon subunit D OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DPB4 PE=3 SV=1 78 195 6.0E-12
sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=1 SV=1 84 191 1.0E-11
sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1 84 191 2.0E-11
sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1 84 191 2.0E-11
sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1 84 191 2.0E-11
sp|Q6BIP4|DPB4_DEBHA DNA polymerase epsilon subunit D OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DPB4 PE=3 SV=2 78 257 3.0E-11
sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=1 SV=1 84 165 4.0E-11
sp|Q04603|DPB4_YEAST DNA polymerase epsilon subunit D OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DPB4 PE=1 SV=1 78 172 2.0E-09
sp|Q6CJD7|DPB4_KLULA DNA polymerase epsilon subunit D OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DPB4 PE=3 SV=1 62 179 3.0E-09
sp|Q75JQ9|DPOE3_DICDI DNA polymerase epsilon subunit 3 OS=Dictyostelium discoideum GN=pole3 PE=3 SV=1 88 168 4.0E-09
sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2 73 206 3.0E-08
sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana GN=NFYB4 PE=1 SV=1 81 156 5.0E-07
sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1 70 180 2.0E-06
sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus GN=NFYB PE=2 SV=2 70 177 3.0E-06
sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB PE=2 SV=1 70 177 3.0E-06
sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1 84 177 3.0E-06
sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus GN=NFYB PE=2 SV=1 70 177 3.0E-06
sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus GN=Nfyb PE=1 SV=1 70 177 3.0E-06
sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb PE=1 SV=1 70 177 3.0E-06
sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB PE=1 SV=2 70 177 3.0E-06
sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1 84 179 4.0E-06
sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=HAP3 PE=3 SV=1 74 170 5.0E-06
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GO

GO Term Description Terminal node
GO:0003677 DNA binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003676 nucleic acid binding No

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 31 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Histone-like TF

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|5462
MPRKSDSAKSDASAATASLAHAPPSTDASARPEEPARGAPAQTARVPAAATVDKKEKDHKDHRDHRDHRDHKDHK
DHKDTVTIEDLMLPKSIITRLAKGVLPPNTQIQANATLALSKSATVFISYLSSHANQHTASSGKKTISPADVFKA
LDDIELSFLREPLEAEFARFHAIQTEKRSSYRQKARAAKDAPAKDGTGVPSITIPAAPSEASAPLAKRPRIDRHD
ADETEDDDAEGPEEQAEDDDQDDDPDDGNDEDDHGQQDDDINGHGDGTEEQNETIHNGHSSDETIDALEHDARRE
DDDDDDDDSD*
Coding >OphauB2|5462
ATGCCGCGCAAGTCAGATAGTGCTAAGAGCGATGCTTCTGCTGCTACTGCATCGCTCGCGCATGCGCCGCCGTCG
ACCGACGCGTCGGCCAGGCCAGAGGAGCCGGCTCGAGGCGCTCCCGCGCAAACAGCAAGAGTGCCTGCTGCCGCG
ACTGTGGACAAGAAGGAAAAGGACCACAAGGACCACAGGGACCACAGGGACCACAGGGACCACAAGGACCACAAG
GACCACAAGGATACAGTCACCATCGAGGACTTGATGCTGCCCAAGTCAATCATCACAAGACTGGCCAAGGGCGTC
CTGCCCCCCAACACGCAGATTCAGGCCAATGCCACGCTGGCGCTCAGCAAGAGCGCTACCGTCTTCATCAGTTAT
CTGTCATCACACGCCAATCAACACACGGCCAGCTCGGGCAAGAAGACGATTTCTCCCGCAGACGTCTTCAAGGCC
CTCGACGACATTGAGCTGTCTTTTTTGCGGGAGCCGCTCGAGGCCGAGTTTGCAAGATTCCATGCCATTCAAACA
GAAAAACGCTCCTCTTATCGGCAAAAGGCCCGCGCTGCAAAAGATGCCCCGGCCAAAGACGGGACTGGCGTTCCC
TCCATCACCATCCCCGCTGCCCCATCGGAAGCCTCGGCGCCCCTGGCCAAGCGGCCACGCATAGACAGGCATGAC
GCTGACGAGACGGAAGACGACGACGCCGAGGGGCCTGAAGAGCAAGCAGAAGACGACGACCAGGACGACGACCCA
GACGACGGCAACGACGAGGATGACCATGGCCAACAAGATGATGACATTAACGGCCATGGTGACGGGACGGAGGAG
CAAAATGAGACTATACACAACGGACATAGCAGCGACGAGACGATAGATGCCCTCGAGCATGATGCTCGCAGGGAA
GATGACGACGATGACGACGACGATAGCGACTAG
Transcript >OphauB2|5462
ATGCCGCGCAAGTCAGATAGTGCTAAGAGCGATGCTTCTGCTGCTACTGCATCGCTCGCGCATGCGCCGCCGTCG
ACCGACGCGTCGGCCAGGCCAGAGGAGCCGGCTCGAGGCGCTCCCGCGCAAACAGCAAGAGTGCCTGCTGCCGCG
ACTGTGGACAAGAAGGAAAAGGACCACAAGGACCACAGGGACCACAGGGACCACAGGGACCACAAGGACCACAAG
GACCACAAGGATACAGTCACCATCGAGGACTTGATGCTGCCCAAGTCAATCATCACAAGACTGGCCAAGGGCGTC
CTGCCCCCCAACACGCAGATTCAGGCCAATGCCACGCTGGCGCTCAGCAAGAGCGCTACCGTCTTCATCAGTTAT
CTGTCATCACACGCCAATCAACACACGGCCAGCTCGGGCAAGAAGACGATTTCTCCCGCAGACGTCTTCAAGGCC
CTCGACGACATTGAGCTGTCTTTTTTGCGGGAGCCGCTCGAGGCCGAGTTTGCAAGATTCCATGCCATTCAAACA
GAAAAACGCTCCTCTTATCGGCAAAAGGCCCGCGCTGCAAAAGATGCCCCGGCCAAAGACGGGACTGGCGTTCCC
TCCATCACCATCCCCGCTGCCCCATCGGAAGCCTCGGCGCCCCTGGCCAAGCGGCCACGCATAGACAGGCATGAC
GCTGACGAGACGGAAGACGACGACGCCGAGGGGCCTGAAGAGCAAGCAGAAGACGACGACCAGGACGACGACCCA
GACGACGGCAACGACGAGGATGACCATGGCCAACAAGATGATGACATTAACGGCCATGGTGACGGGACGGAGGAG
CAAAATGAGACTATACACAACGGACATAGCAGCGACGAGACGATAGATGCCCTCGAGCATGATGCTCGCAGGGAA
GATGACGACGATGACGACGACGATAGCGACTAG
Gene >OphauB2|5462
ATGCCGCGCAAGTCAGATAGTGCTAAGAGCGATGCTTCTGCTGCTACTGCATCGCTCGCGCATGCGCCGCCGTCG
ACCGACGCGTCGGCCAGGCCAGAGGAGCCGGCTCGAGGCGCTCCCGCGCAAACAGCAAGAGTGCCTGCTGCCGCG
ACTGTGGACAAGAAGGAAAAGGACCACAAGGACCACAGGGACCACAGGGACCACAGGGACCACAAGGACCACAAG
GACCACAAGGATACAGTCACCATCGAGGTGCGACCATGATTGCTTTTCTCTGGCTTGCCCTGGACTAACTAGCGG
CTGCAGGACTTGATGCTGCCCAAGTCAATCATCACAAGACTGGCCAAGGGCGTCCTGCCCCCCAACACGCAGATT
CAGGCCAATGCCACGCTGGCGCTCAGCAAGAGCGCTACCGTCTTCATCAGTTATCTGTCATCACAGTAAGCCGAC
AGCTTGGCCATTTCTGATTCTCTCTTGCTTGGGCTGAGATGGTTGTCCTGTAGCGCCAATCAACACACGGCCAGC
TCGGGCAAGAAGACGATTTCTCCCGCAGACGTCTTCAAGGCCCTCGACGACATTGAGCTGTCTTTTTTGCGGGAG
CCGCTCGAGGCCGAGTTTGCAAGTAGGCTTGGCCCCTTGCTGCCCGTCGTCATGAATACTCACCAGGCGCTTCGC
CAGGATTCCATGCCATTCAAACAGAAAAACGCTCCTCTTATCGGCAAAAGGCCCGCGCTGCAAAAGATGCCCCGG
CCAAAGACGGGACTGGCGTTCCCTCCATCACCATCCCCGCTGCCCCATCGGAAGCCTCGGCGCCCCTGGCCAAGC
GGCCACGCATAGACAGGCATGACGCTGACGAGACGGAAGACGACGACGCCGAGGGGCCTGAAGAGCAAGCAGAAG
ACGACGACCAGGACGACGACCCAGACGACGGCAACGACGAGGATGACCATGGCCAACAAGATGATGACATTAACG
GCCATGGTGACGGGACGGAGGAGCAAAATGAGACTATACACAACGGACATAGCAGCGACGAGACGATAGATGCCC
TCGAGCATGATGCTCGCAGGGAAGATGACGACGATGACGACGACGATAGCGACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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