© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|5456 |
| Gene name | |
| Location | Contig_42:61380..62402 |
| Strand | + |
| Gene length (bp) | 1022 |
| Transcript length (bp) | 966 |
| Coding sequence length (bp) | 966 |
| Protein length (aa) | 322 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04427 | Brix | Brix domain | 6.0E-42 | 35 | 238 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UUG1|RPF2_SCHPO | Ribosome production factor 2 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC926.08c PE=1 SV=1 | 1 | 299 | 2.0E-96 |
| sp|P36160|RPF2_YEAST | Ribosome biogenesis protein RPF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPF2 PE=1 SV=1 | 1 | 313 | 6.0E-95 |
| sp|Q9JJ80|RPF2_MOUSE | Ribosome production factor 2 homolog OS=Mus musculus GN=Rpf2 PE=2 SV=2 | 5 | 318 | 2.0E-70 |
| sp|Q9H7B2|RPF2_HUMAN | Ribosome production factor 2 homolog OS=Homo sapiens GN=RPF2 PE=1 SV=2 | 3 | 318 | 1.0E-68 |
| sp|Q2YDN6|RPF2_BOVIN | Ribosome production factor 2 homolog OS=Bos taurus GN=RPF2 PE=2 SV=1 | 3 | 317 | 3.0E-68 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UUG1|RPF2_SCHPO | Ribosome production factor 2 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC926.08c PE=1 SV=1 | 1 | 299 | 2.0E-96 |
| sp|P36160|RPF2_YEAST | Ribosome biogenesis protein RPF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPF2 PE=1 SV=1 | 1 | 313 | 6.0E-95 |
| sp|Q9JJ80|RPF2_MOUSE | Ribosome production factor 2 homolog OS=Mus musculus GN=Rpf2 PE=2 SV=2 | 5 | 318 | 2.0E-70 |
| sp|Q9H7B2|RPF2_HUMAN | Ribosome production factor 2 homolog OS=Homo sapiens GN=RPF2 PE=1 SV=2 | 3 | 318 | 1.0E-68 |
| sp|Q2YDN6|RPF2_BOVIN | Ribosome production factor 2 homolog OS=Bos taurus GN=RPF2 PE=2 SV=1 | 3 | 317 | 3.0E-68 |
| sp|Q9VEB3|RPF2_DROME | Ribosome production factor 2 homolog OS=Drosophila melanogaster GN=Non3 PE=2 SV=3 | 1 | 298 | 4.0E-59 |
| sp|Q9N3F0|RPF2_CAEEL | Ribosome production factor 2 homolog OS=Caenorhabditis elegans GN=Y54E10A.10 PE=3 SV=1 | 1 | 298 | 1.0E-54 |
| sp|Q54DJ0|RPF2_DICDI | Ribosome production factor 2 homolog OS=Dictyostelium discoideum GN=bxdc1 PE=3 SV=1 | 12 | 296 | 8.0E-49 |
| sp|Q9AWM9|RPF2_ORYSJ | Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica GN=Os01g0513800 PE=2 SV=1 | 7 | 297 | 2.0E-47 |
| sp|Q9LUG5|RPF2_ARATH | Ribosome production factor 2 homolog OS=Arabidopsis thaliana GN=At3g23620 PE=2 SV=1 | 1 | 301 | 3.0E-42 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0019843 | rRNA binding | Yes |
| GO:0006364 | rRNA processing | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0006396 | RNA processing | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0003723 | RNA binding | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0016072 | rRNA metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|5456 MLRQVKPRNARSKRALEKREPKTVENPKTCLFLRGTSCSQIVQDALNELYSLRQPFAKKFSKKNAIHPFEDASSL EFFAEKNDTSLLVFGSSQKKRPHALTFARTFGNRLLDMLELYLDPQSFRCMAQFKTKKVAIGLRPMILFAGTPFE SPVSNEYTLAKSLLLDFFKGDVSSGQIDVEGLQYIISISSEQEIASDGDIKPPIRIRAYLIRTLRSGQKLPRVEL EEMGPRMDLRVGRVREPDQSMLKEAMRKARGTEEKTKKNISTDTMGDKLGRVHLGRQDLGQLQTRKMKGLKRSIH DEPHDNVDSDAKNAKKSKTMS* |
| Coding | >OphauB2|5456 ATGCTTCGCCAAGTCAAACCCCGCAACGCTCGCTCGAAGCGGGCTCTCGAGAAGCGCGAGCCCAAAACCGTCGAG AACCCCAAGACATGCCTCTTCCTGCGCGGCACCAGCTGCTCACAAATCGTCCAAGACGCACTCAACGAGCTCTAC TCGCTCCGACAGCCCTTCGCCAAGAAATTCTCAAAGAAAAATGCCATTCACCCGTTCGAAGACGCCTCATCATTA GAATTCTTTGCTGAAAAGAACGATACCAGCCTGCTCGTCTTTGGCAGCAGCCAAAAGAAGCGTCCACATGCCCTC ACCTTTGCCCGTACCTTTGGAAACCGTCTGCTCGACATGCTTGAACTCTACCTTGACCCACAATCTTTTCGTTGC ATGGCCCAATTCAAGACCAAAAAGGTTGCCATCGGTTTGCGACCAATGATTCTCTTTGCCGGTACCCCTTTTGAG AGCCCCGTGAGCAATGAATACACCTTGGCAAAGAGCCTACTTTTAGACTTTTTCAAAGGTGATGTCTCCTCGGGC CAGATTGATGTGGAAGGCTTGCAATACATCATCTCTATTTCAAGCGAGCAAGAGATTGCTTCCGATGGCGATATC AAGCCTCCCATTCGGATCCGCGCCTACCTCATTCGCACTCTACGCAGTGGTCAGAAGCTTCCTCGCGTCGAGCTT GAAGAAATGGGTCCTCGCATGGATCTACGGGTTGGTCGTGTCAGAGAACCCGACCAATCCATGCTCAAGGAGGCT ATGCGCAAGGCCCGTGGCACCGAGGAAAAGACCAAGAAGAACATTTCAACCGATACCATGGGTGACAAGCTCGGC CGTGTACATTTGGGAAGGCAGGACCTAGGTCAACTTCAGACGAGGAAGATGAAGGGTCTCAAGAGGTCAATACAT GACGAGCCTCACGACAATGTCGATTCTGATGCAAAAAATGCAAAAAAATCCAAAACTATGTCATGA |
| Transcript | >OphauB2|5456 ATGCTTCGCCAAGTCAAACCCCGCAACGCTCGCTCGAAGCGGGCTCTCGAGAAGCGCGAGCCCAAAACCGTCGAG AACCCCAAGACATGCCTCTTCCTGCGCGGCACCAGCTGCTCACAAATCGTCCAAGACGCACTCAACGAGCTCTAC TCGCTCCGACAGCCCTTCGCCAAGAAATTCTCAAAGAAAAATGCCATTCACCCGTTCGAAGACGCCTCATCATTA GAATTCTTTGCTGAAAAGAACGATACCAGCCTGCTCGTCTTTGGCAGCAGCCAAAAGAAGCGTCCACATGCCCTC ACCTTTGCCCGTACCTTTGGAAACCGTCTGCTCGACATGCTTGAACTCTACCTTGACCCACAATCTTTTCGTTGC ATGGCCCAATTCAAGACCAAAAAGGTTGCCATCGGTTTGCGACCAATGATTCTCTTTGCCGGTACCCCTTTTGAG AGCCCCGTGAGCAATGAATACACCTTGGCAAAGAGCCTACTTTTAGACTTTTTCAAAGGTGATGTCTCCTCGGGC CAGATTGATGTGGAAGGCTTGCAATACATCATCTCTATTTCAAGCGAGCAAGAGATTGCTTCCGATGGCGATATC AAGCCTCCCATTCGGATCCGCGCCTACCTCATTCGCACTCTACGCAGTGGTCAGAAGCTTCCTCGCGTCGAGCTT GAAGAAATGGGTCCTCGCATGGATCTACGGGTTGGTCGTGTCAGAGAACCCGACCAATCCATGCTCAAGGAGGCT ATGCGCAAGGCCCGTGGCACCGAGGAAAAGACCAAGAAGAACATTTCAACCGATACCATGGGTGACAAGCTCGGC CGTGTACATTTGGGAAGGCAGGACCTAGGTCAACTTCAGACGAGGAAGATGAAGGGTCTCAAGAGGTCAATACAT GACGAGCCTCACGACAATGTCGATTCTGATGCAAAAAATGCAAAAAAATCCAAAACTATGTCATGA |
| Gene | >OphauB2|5456 ATGCTTCGCCAAGTGTAAGTATACGTATGCTCCGTCTTCTGACAAGCCAGCTTAAACTTTTTTTTTACAGCAAAC CCCGCAACGCTCGCTCGAAGCGGGCTCTCGAGAAGCGCGAGCCCAAAACCGTCGAGAACCCCAAGACATGCCTCT TCCTGCGCGGCACCAGCTGCTCACAAATCGTCCAAGACGCACTCAACGAGCTCTACTCGCTCCGACAGCCCTTCG CCAAGAAATTCTCAAAGAAAAATGCCATTCACCCGTTCGAAGACGCCTCATCATTAGAATTCTTTGCTGAAAAGA ACGATACCAGCCTGCTCGTCTTTGGCAGCAGCCAAAAGAAGCGTCCACATGCCCTCACCTTTGCCCGTACCTTTG GAAACCGTCTGCTCGACATGCTTGAACTCTACCTTGACCCACAATCTTTTCGTTGCATGGCCCAATTCAAGACCA AAAAGGTTGCCATCGGTTTGCGACCAATGATTCTCTTTGCCGGTACCCCTTTTGAGAGCCCCGTGAGCAATGAAT ACACCTTGGCAAAGAGCCTACTTTTAGACTTTTTCAAAGGTGATGTCTCCTCGGGCCAGATTGATGTGGAAGGCT TGCAATACATCATCTCTATTTCAAGCGAGCAAGAGATTGCTTCCGATGGCGATATCAAGCCTCCCATTCGGATCC GCGCCTACCTCATTCGCACTCTACGCAGTGGTCAGAAGCTTCCTCGCGTCGAGCTTGAAGAAATGGGTCCTCGCA TGGATCTACGGGTTGGTCGTGTCAGAGAACCCGACCAATCCATGCTCAAGGAGGCTATGCGCAAGGCCCGTGGCA CCGAGGAAAAGACCAAGAAGAACATTTCAACCGATACCATGGGTGACAAGCTCGGCCGTGTACATTTGGGAAGGC AGGACCTAGGTCAACTTCAGACGAGGAAGATGAAGGGTCTCAAGAGGTCAATACATGACGAGCCTCACGACAATG TCGATTCTGATGCAAAAAATGCAAAAAAATCCAAAACTATGTCATGA |