Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|5449
Gene name
LocationContig_42:36835..38095
Strand-
Gene length (bp)1260
Transcript length (bp)1260
Coding sequence length (bp)1260
Protein length (aa) 420

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF16782 SIL1 Nucleotide exchange factor SIL1 3.2E-10 154 392

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q6BTV5|SIL1_DEBHA Nucleotide exchange factor SIL1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SIL1 PE=3 SV=2 39 320 1.0E-19
sp|Q5A360|SIL1_CANAL Nucleotide exchange factor SIL1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SIL1 PE=3 SV=1 39 319 2.0E-19
sp|Q99158|SIL1_YARLI Nucleotide exchange factor SIL1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SIL1 PE=1 SV=2 44 241 1.0E-16
sp|Q08199|SIL1_YEAST Nucleotide exchange factor SIL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SIL1 PE=1 SV=1 14 296 5.0E-09
sp|Q758U2|SIL1_ASHGO Nucleotide exchange factor SIL1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SIL1 PE=3 SV=1 54 297 1.0E-08

GO

GO Term Description Terminal node
GO:0000774 adenyl-nucleotide exchange factor activity Yes
GO:0005783 endoplasmic reticulum Yes
GO:0017076 purine nucleotide binding No
GO:0005575 cellular_component No
GO:0005488 binding No
GO:0003674 molecular_function No
GO:0000166 nucleotide binding No
GO:0043226 organelle No
GO:0098772 molecular function regulator activity No
GO:0110165 cellular anatomical entity No
GO:0043229 intracellular organelle No
GO:0097159 organic cyclic compound binding No
GO:1901265 nucleoside phosphate binding No
GO:0043227 membrane-bounded organelle No
GO:1901363 heterocyclic compound binding No
GO:0060590 ATPase regulator activity No
GO:0036094 small molecule binding No
GO:0043231 intracellular membrane-bounded organelle No
GO:0030554 adenyl nucleotide binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 32 0.45

Transmembrane Domains

Domain # Start End Length
1 12 34 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|5449
MPWSCSPKAKHFTLPLAIGLLSALIPATAIAQVSPQQPLEADADLICHTSNPKDCYPRVFVATKEFQTVHDDQEL
PKGLHVRLDIWTGKKEAKINVPDEKDPALEGLVGDKAVLVVEPDEQVDQRPLLPKDAPKYEPVGKIKKPDQDAEL
FATAMNVLKQGASAGDGAFDGALEALQELSHDIYYGYAMMGDSAIAQKLFCLMAGQDARQTDAGFVARDGQAASI
LAGALRNNPAALREVMKMWPELKQHACPLSATAHLGDTLFWNLVPSGHVDAERAIAARLLAKAKISVMNGLLKDG
SIRRHFLDSGVMSGLVEVLVPEGDEWDDVQRKAGQLALEHFLDTDMGAELGQWPRVAKVSHEQCRLAEWAKQEGC
WDYHVARIQNAHKDDEHHWSRQVKDRLVAARKTMGTRAGEHEEL*
Coding >OphauB2|5449
ATGCCTTGGTCATGTTCACCAAAAGCCAAACATTTCACACTGCCTCTTGCCATAGGCTTGCTATCTGCTCTCATA
CCAGCCACCGCCATCGCCCAGGTCTCACCCCAGCAGCCACTAGAAGCAGATGCTGACCTCATCTGCCATACGTCG
AATCCAAAAGATTGCTATCCTCGCGTCTTTGTGGCGACCAAGGAGTTTCAGACGGTCCATGACGACCAAGAGCTT
CCCAAAGGTTTGCACGTGCGTCTCGATATCTGGACGGGGAAAAAAGAGGCCAAGATTAATGTGCCTGACGAGAAG
GACCCAGCACTCGAGGGTCTTGTTGGAGACAAGGCTGTCCTTGTTGTCGAGCCAGATGAGCAAGTGGACCAGAGG
CCCCTACTACCCAAGGATGCCCCCAAGTATGAGCCGGTTGGCAAGATCAAGAAGCCGGATCAAGACGCCGAGCTC
TTTGCAACGGCCATGAATGTGTTGAAGCAAGGGGCTAGTGCGGGCGATGGCGCGTTTGATGGCGCACTTGAGGCG
CTCCAAGAGCTGTCACACGATATATACTATGGATATGCCATGATGGGAGACTCTGCCATTGCCCAAAAACTCTTT
TGTCTCATGGCTGGCCAGGACGCAAGGCAGACAGACGCGGGATTTGTTGCTCGAGACGGACAAGCCGCCTCCATC
TTGGCCGGCGCTCTGCGCAACAACCCGGCGGCACTCAGGGAGGTGATGAAGATGTGGCCTGAGCTCAAGCAACAT
GCATGCCCGCTTAGCGCTACAGCACATTTGGGCGATACTCTGTTTTGGAATCTCGTGCCCTCGGGCCATGTTGAT
GCTGAGAGGGCCATTGCAGCCCGGCTACTAGCAAAGGCAAAGATATCTGTCATGAATGGTCTCCTCAAGGACGGC
TCAATACGGCGCCATTTCCTAGACAGCGGCGTCATGAGCGGCCTCGTCGAGGTGCTTGTGCCCGAGGGAGACGAA
TGGGATGACGTGCAGCGCAAAGCTGGGCAGCTGGCGCTGGAGCACTTTCTCGACACTGACATGGGCGCTGAGCTG
GGACAGTGGCCACGGGTGGCCAAAGTGAGCCATGAGCAGTGCCGGCTGGCAGAGTGGGCAAAACAAGAAGGCTGC
TGGGACTACCATGTGGCTCGCATTCAGAATGCGCACAAGGACGATGAGCATCACTGGAGCCGGCAGGTAAAGGAC
AGGCTTGTAGCGGCGAGGAAGACGATGGGCACAAGAGCGGGCGAGCATGAGGAGCTGTAG
Transcript >OphauB2|5449
ATGCCTTGGTCATGTTCACCAAAAGCCAAACATTTCACACTGCCTCTTGCCATAGGCTTGCTATCTGCTCTCATA
CCAGCCACCGCCATCGCCCAGGTCTCACCCCAGCAGCCACTAGAAGCAGATGCTGACCTCATCTGCCATACGTCG
AATCCAAAAGATTGCTATCCTCGCGTCTTTGTGGCGACCAAGGAGTTTCAGACGGTCCATGACGACCAAGAGCTT
CCCAAAGGTTTGCACGTGCGTCTCGATATCTGGACGGGGAAAAAAGAGGCCAAGATTAATGTGCCTGACGAGAAG
GACCCAGCACTCGAGGGTCTTGTTGGAGACAAGGCTGTCCTTGTTGTCGAGCCAGATGAGCAAGTGGACCAGAGG
CCCCTACTACCCAAGGATGCCCCCAAGTATGAGCCGGTTGGCAAGATCAAGAAGCCGGATCAAGACGCCGAGCTC
TTTGCAACGGCCATGAATGTGTTGAAGCAAGGGGCTAGTGCGGGCGATGGCGCGTTTGATGGCGCACTTGAGGCG
CTCCAAGAGCTGTCACACGATATATACTATGGATATGCCATGATGGGAGACTCTGCCATTGCCCAAAAACTCTTT
TGTCTCATGGCTGGCCAGGACGCAAGGCAGACAGACGCGGGATTTGTTGCTCGAGACGGACAAGCCGCCTCCATC
TTGGCCGGCGCTCTGCGCAACAACCCGGCGGCACTCAGGGAGGTGATGAAGATGTGGCCTGAGCTCAAGCAACAT
GCATGCCCGCTTAGCGCTACAGCACATTTGGGCGATACTCTGTTTTGGAATCTCGTGCCCTCGGGCCATGTTGAT
GCTGAGAGGGCCATTGCAGCCCGGCTACTAGCAAAGGCAAAGATATCTGTCATGAATGGTCTCCTCAAGGACGGC
TCAATACGGCGCCATTTCCTAGACAGCGGCGTCATGAGCGGCCTCGTCGAGGTGCTTGTGCCCGAGGGAGACGAA
TGGGATGACGTGCAGCGCAAAGCTGGGCAGCTGGCGCTGGAGCACTTTCTCGACACTGACATGGGCGCTGAGCTG
GGACAGTGGCCACGGGTGGCCAAAGTGAGCCATGAGCAGTGCCGGCTGGCAGAGTGGGCAAAACAAGAAGGCTGC
TGGGACTACCATGTGGCTCGCATTCAGAATGCGCACAAGGACGATGAGCATCACTGGAGCCGGCAGGTAAAGGAC
AGGCTTGTAGCGGCGAGGAAGACGATGGGCACAAGAGCGGGCGAGCATGAGGAGCTGTAG
Gene >OphauB2|5449
ATGCCTTGGTCATGTTCACCAAAAGCCAAACATTTCACACTGCCTCTTGCCATAGGCTTGCTATCTGCTCTCATA
CCAGCCACCGCCATCGCCCAGGTCTCACCCCAGCAGCCACTAGAAGCAGATGCTGACCTCATCTGCCATACGTCG
AATCCAAAAGATTGCTATCCTCGCGTCTTTGTGGCGACCAAGGAGTTTCAGACGGTCCATGACGACCAAGAGCTT
CCCAAAGGTTTGCACGTGCGTCTCGATATCTGGACGGGGAAAAAAGAGGCCAAGATTAATGTGCCTGACGAGAAG
GACCCAGCACTCGAGGGTCTTGTTGGAGACAAGGCTGTCCTTGTTGTCGAGCCAGATGAGCAAGTGGACCAGAGG
CCCCTACTACCCAAGGATGCCCCCAAGTATGAGCCGGTTGGCAAGATCAAGAAGCCGGATCAAGACGCCGAGCTC
TTTGCAACGGCCATGAATGTGTTGAAGCAAGGGGCTAGTGCGGGCGATGGCGCGTTTGATGGCGCACTTGAGGCG
CTCCAAGAGCTGTCACACGATATATACTATGGATATGCCATGATGGGAGACTCTGCCATTGCCCAAAAACTCTTT
TGTCTCATGGCTGGCCAGGACGCAAGGCAGACAGACGCGGGATTTGTTGCTCGAGACGGACAAGCCGCCTCCATC
TTGGCCGGCGCTCTGCGCAACAACCCGGCGGCACTCAGGGAGGTGATGAAGATGTGGCCTGAGCTCAAGCAACAT
GCATGCCCGCTTAGCGCTACAGCACATTTGGGCGATACTCTGTTTTGGAATCTCGTGCCCTCGGGCCATGTTGAT
GCTGAGAGGGCCATTGCAGCCCGGCTACTAGCAAAGGCAAAGATATCTGTCATGAATGGTCTCCTCAAGGACGGC
TCAATACGGCGCCATTTCCTAGACAGCGGCGTCATGAGCGGCCTCGTCGAGGTGCTTGTGCCCGAGGGAGACGAA
TGGGATGACGTGCAGCGCAAAGCTGGGCAGCTGGCGCTGGAGCACTTTCTCGACACTGACATGGGCGCTGAGCTG
GGACAGTGGCCACGGGTGGCCAAAGTGAGCCATGAGCAGTGCCGGCTGGCAGAGTGGGCAAAACAAGAAGGCTGC
TGGGACTACCATGTGGCTCGCATTCAGAATGCGCACAAGGACGATGAGCATCACTGGAGCCGGCAGGTAAAGGAC
AGGCTTGTAGCGGCGAGGAAGACGATGGGCACAAGAGCGGGCGAGCATGAGGAGCTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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