© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|5311 |
| Gene name | |
| Location | Contig_4:312219..313154 |
| Strand | - |
| Gene length (bp) | 935 |
| Transcript length (bp) | 849 |
| Coding sequence length (bp) | 849 |
| Protein length (aa) | 283 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05724 | TPMT | Thiopurine S-methyltransferase (TPMT) | 9.1E-27 | 27 | 225 |
| PF13649 | Methyltransf_25 | Methyltransferase domain | 3.9E-07 | 80 | 191 |
| PF08241 | Methyltransf_11 | Methyltransferase domain | 2.2E-06 | 78 | 195 |
| PF13489 | Methyltransf_23 | Methyltransferase domain | 8.3E-07 | 80 | 212 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6AWU6|HOL3_ARATH | Probable thiol methyltransferase 2 OS=Arabidopsis thaliana GN=HOL3 PE=1 SV=1 | 5 | 261 | 8.0E-22 |
| sp|Q0WP12|HOL1_ARATH | Thiocyanate methyltransferase 1 OS=Arabidopsis thaliana GN=HOL1 PE=1 SV=1 | 11 | 230 | 3.0E-18 |
| sp|Q93V78|TMT1_BRAOL | Thiocyanate methyltransferase 1 OS=Brassica oleracea GN=TMT1 PE=1 SV=1 | 22 | 230 | 4.0E-18 |
| sp|Q93XC4|TMT2_BRAOL | Probable thiocyanate methyltransferase 2 OS=Brassica oleracea GN=TMT2 PE=2 SV=1 | 30 | 230 | 1.0E-17 |
| sp|O80562|HOL2_ARATH | Probable thiol methyltransferase 1 OS=Arabidopsis thaliana GN=HOL2 PE=1 SV=1 | 11 | 230 | 2.0E-16 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6AWU6|HOL3_ARATH | Probable thiol methyltransferase 2 OS=Arabidopsis thaliana GN=HOL3 PE=1 SV=1 | 5 | 261 | 8.0E-22 |
| sp|Q0WP12|HOL1_ARATH | Thiocyanate methyltransferase 1 OS=Arabidopsis thaliana GN=HOL1 PE=1 SV=1 | 11 | 230 | 3.0E-18 |
| sp|Q93V78|TMT1_BRAOL | Thiocyanate methyltransferase 1 OS=Brassica oleracea GN=TMT1 PE=1 SV=1 | 22 | 230 | 4.0E-18 |
| sp|Q93XC4|TMT2_BRAOL | Probable thiocyanate methyltransferase 2 OS=Brassica oleracea GN=TMT2 PE=2 SV=1 | 30 | 230 | 1.0E-17 |
| sp|O80562|HOL2_ARATH | Probable thiol methyltransferase 1 OS=Arabidopsis thaliana GN=HOL2 PE=1 SV=1 | 11 | 230 | 2.0E-16 |
| sp|A7MVH9|TPMT_VIBCB | Thiopurine S-methyltransferase OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=tpm PE=3 SV=1 | 38 | 222 | 4.0E-07 |
| sp|Q93JT2|TPMT_PSEU5 | Thiopurine S-methyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=tpm PE=3 SV=3 | 28 | 202 | 1.0E-06 |
| sp|A9I3K3|TPMT_BORPD | Thiopurine S-methyltransferase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=tpm PE=3 SV=1 | 76 | 232 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | Yes |
| GO:0008168 | methyltransferase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016740 | transferase activity | No |
| GO:0016741 | transferase activity, transferring one-carbon groups | No |
| Orthofinder run ID | 4 |
| Orthogroup | 980 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|5311 MADTHVAPASSPQLSSLFANTPLAEQASRWDALYQRSHTPWDRAGPSLALADVLTQRRDLVPPVDSPHDAPHRPT ALVPGCGPGHDVLLLSSFGYDVWGLDISPGAFALAQQNRLEAERHGRYAPVHGVAQAGRIHWLTADFFDEAWSRG IGTGGDGRFDLVFDYTFLCALPIAARPQWAKRMSSLVRPRGRLICLEFPSSKPLLEPGPPWPMRPEVYEALLAAP GQDAVYDADGSIVCSVNAKPSHGALHRLGIIKPERTHPAGTAPDGSVIDFISIWAPS* |
| Coding | >OphauB2|5311 ATGGCCGACACGCACGTCGCTCCCGCCTCGTCGCCCCAGCTGTCGTCCTTGTTTGCAAACACCCCCCTCGCAGAG CAGGCCTCGCGCTGGGACGCCCTCTACCAACGCTCCCACACGCCCTGGGACCGCGCCGGGCCCTCGCTCGCCCTC GCCGATGTCCTGACCCAGCGCCGAGACCTTGTCCCCCCGGTAGACTCGCCCCACGATGCACCTCACCGTCCCACC GCCCTTGTGCCCGGATGTGGGCCCGGCCACGACGTCTTGCTGCTCAGCTCCTTTGGCTACGACGTCTGGGGGCTC GATATTAGCCCGGGTGCTTTTGCTCTCGCCCAACAGAATCGCCTGGAGGCAGAGCGCCACGGCCGCTATGCGCCT GTCCACGGCGTTGCCCAGGCCGGCCGCATTCACTGGCTGACGGCAGACTTTTTCGACGAGGCTTGGTCACGCGGC ATTGGCACCGGCGGCGACGGCAGGTTTGATCTCGTATTTGACTATACGTTTCTCTGCGCCCTGCCCATTGCTGCT CGTCCCCAGTGGGCCAAGCGCATGTCCAGCCTGGTGCGCCCTCGCGGCCGCCTCATCTGCCTCGAGTTTCCCTCC AGCAAGCCTCTTCTTGAGCCAGGCCCGCCATGGCCCATGCGGCCCGAGGTATATGAGGCGCTGCTCGCTGCTCCG GGCCAAGACGCTGTATACGATGCCGACGGGTCCATTGTCTGCTCCGTCAATGCCAAGCCCAGCCATGGCGCTCTG CACCGCCTGGGCATCATCAAGCCTGAGCGCACTCATCCCGCGGGTACGGCGCCCGATGGCTCCGTCATTGACTTC ATCTCCATCTGGGCGCCGTCATGA |
| Transcript | >OphauB2|5311 ATGGCCGACACGCACGTCGCTCCCGCCTCGTCGCCCCAGCTGTCGTCCTTGTTTGCAAACACCCCCCTCGCAGAG CAGGCCTCGCGCTGGGACGCCCTCTACCAACGCTCCCACACGCCCTGGGACCGCGCCGGGCCCTCGCTCGCCCTC GCCGATGTCCTGACCCAGCGCCGAGACCTTGTCCCCCCGGTAGACTCGCCCCACGATGCACCTCACCGTCCCACC GCCCTTGTGCCCGGATGTGGGCCCGGCCACGACGTCTTGCTGCTCAGCTCCTTTGGCTACGACGTCTGGGGGCTC GATATTAGCCCGGGTGCTTTTGCTCTCGCCCAACAGAATCGCCTGGAGGCAGAGCGCCACGGCCGCTATGCGCCT GTCCACGGCGTTGCCCAGGCCGGCCGCATTCACTGGCTGACGGCAGACTTTTTCGACGAGGCTTGGTCACGCGGC ATTGGCACCGGCGGCGACGGCAGGTTTGATCTCGTATTTGACTATACGTTTCTCTGCGCCCTGCCCATTGCTGCT CGTCCCCAGTGGGCCAAGCGCATGTCCAGCCTGGTGCGCCCTCGCGGCCGCCTCATCTGCCTCGAGTTTCCCTCC AGCAAGCCTCTTCTTGAGCCAGGCCCGCCATGGCCCATGCGGCCCGAGGTATATGAGGCGCTGCTCGCTGCTCCG GGCCAAGACGCTGTATACGATGCCGACGGGTCCATTGTCTGCTCCGTCAATGCCAAGCCCAGCCATGGCGCTCTG CACCGCCTGGGCATCATCAAGCCTGAGCGCACTCATCCCGCGGGTACGGCGCCCGATGGCTCCGTCATTGACTTC ATCTCCATCTGGGCGCCGTCATGA |
| Gene | >OphauB2|5311 ATGGCCGACACGCACGTCGCTCCCGCCTCGTCGCCCCAGCTGTCGTCCTTGTTTGCAAACACCCCCCTCGCAGAG CAGGCCTCGCGCTGGGACGCCCTCTACCAACGCTCCCACACGCCCTGGGACCGCGCCGGGCCCTCGCTCGCCCTC GCCGATGTCCTGACCCAGCGCCGAGACCTTGTCCCCCCGGTAGACTCGCCCCACGATGCACCTCACCGTCCCACC GCCCTTGTGCCCGGATGTGGGCCCGGCCACGACGTCTTGCTGCTCAGCTCCTTTGGCTACGACGTCTGGGGGCTC GATATTAGCCCGGGTGCTTTTGCTCTCGCCCAACAGAATCGCCTGGAGGCAGAGCGCCACGGCCGCTATGCGCCT GTCCACGGCGTTGCCCAGGCCGGCCGCATTCACTGGCTGACGGCAGACTTTTTCGACGAGGCTTGGTCACGCGGC ATTGGCACCGGCGGCGACGGCAGGTTTGATCTCGTATTTGACTATACGGTGATGGCGCCCCTCTCCCCCTAGTTT CTCATCTTGCTCTGCATCTTGACCTTGGCCTGCGCGCGACGACTAACCCGCTCTGCCAGTTTCTCTGCGCCCTGC CCATTGCTGCTCGTCCCCAGTGGGCCAAGCGCATGTCCAGCCTGGTGCGCCCTCGCGGCCGCCTCATCTGCCTCG AGTTTCCCTCCAGCAAGCCTCTTCTTGAGCCAGGCCCGCCATGGCCCATGCGGCCCGAGGTATATGAGGCGCTGC TCGCTGCTCCGGGCCAAGACGCTGTATACGATGCCGACGGGTCCATTGTCTGCTCCGTCAATGCCAAGCCCAGCC ATGGCGCTCTGCACCGCCTGGGCATCATCAAGCCTGAGCGCACTCATCCCGCGGGTACGGCGCCCGATGGCTCCG TCATTGACTTCATCTCCATCTGGGCGCCGTCATGA |