Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|5293
Gene name
LocationContig_4:264248..264934
Strand-
Gene length (bp)686
Transcript length (bp)570
Coding sequence length (bp)570
Protein length (aa) 190

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q01302|CCG6_NEUCR Clock-controlled protein 6 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ccg-6 PE=2 SV=2 25 189 5.0E-31
sp|P40092|SPI1_YEAST Uncharacterized cell wall protein SPI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPI1 PE=2 SV=1 18 89 2.0E-11
sp|Q01589|SED1_YEAST Cell wall protein SED1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED1 PE=1 SV=1 30 71 4.0E-11

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

Domain # Start End Length
1 166 188 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|5293
MKFTAAAVLAAAAGASAHYGNNGTTVVTEVVDKYVTYCPGPTSIVHGSKTYTVTEATTLTITDCPCTITKPVMTV
SSVICHTCAPSSSANPVYTPVPSSPAAPNSPAVPVPALSSGYSNGTAPAGKPSVVAPTNTPEAGVPIGTGVPPPA
GGVSVTSAPTTVPTAGAAGVAALSGAGLVGLVGFVALVL*
Coding >OphauB2|5293
ATGAAGTTTACTGCTGCTGCTGTCCTGGCTGCTGCCGCTGGCGCCTCTGCCCACTATGGCAATAATGGCACCACT
GTCGTGACTGAGGTTGTCGACAAGTACGTCACGTACTGCCCGGGCCCTACCTCCATCGTACACGGCTCCAAGACC
TACACCGTCACTGAGGCCACCACTCTGACAATCACCGACTGCCCTTGCACCATTACCAAGCCCGTCATGACGGTT
TCGTCTGTCATCTGCCACACTTGCGCCCCCAGCAGCTCCGCCAACCCCGTCTATACTCCTGTCCCTAGCAGCCCT
GCTGCCCCTAACAGCCCTGCCGTCCCTGTTCCCGCGCTGTCGTCTGGCTACAGCAATGGTACCGCGCCCGCGGGC
AAGCCATCCGTCGTTGCTCCCACAAACACCCCCGAGGCTGGTGTGCCCATTGGCACTGGTGTCCCCCCGCCTGCC
GGTGGCGTGTCGGTTACTAGCGCACCCACCACGGTTCCCACCGCCGGTGCTGCCGGTGTTGCTGCTCTCTCTGGC
GCCGGTCTTGTCGGTCTCGTTGGCTTCGTTGCTCTGGTGCTGTAA
Transcript >OphauB2|5293
ATGAAGTTTACTGCTGCTGCTGTCCTGGCTGCTGCCGCTGGCGCCTCTGCCCACTATGGCAATAATGGCACCACT
GTCGTGACTGAGGTTGTCGACAAGTACGTCACGTACTGCCCGGGCCCTACCTCCATCGTACACGGCTCCAAGACC
TACACCGTCACTGAGGCCACCACTCTGACAATCACCGACTGCCCTTGCACCATTACCAAGCCCGTCATGACGGTT
TCGTCTGTCATCTGCCACACTTGCGCCCCCAGCAGCTCCGCCAACCCCGTCTATACTCCTGTCCCTAGCAGCCCT
GCTGCCCCTAACAGCCCTGCCGTCCCTGTTCCCGCGCTGTCGTCTGGCTACAGCAATGGTACCGCGCCCGCGGGC
AAGCCATCCGTCGTTGCTCCCACAAACACCCCCGAGGCTGGTGTGCCCATTGGCACTGGTGTCCCCCCGCCTGCC
GGTGGCGTGTCGGTTACTAGCGCACCCACCACGGTTCCCACCGCCGGTGCTGCCGGTGTTGCTGCTCTCTCTGGC
GCCGGTCTTGTCGGTCTCGTTGGCTTCGTTGCTCTGGTGCTGTAA
Gene >OphauB2|5293
ATGAAGTTTACTGCTGCTGCTGTCCTGGCTGCTGCCGCTGGCGCCTCTGCCCACTATGGCAATAATGGCACCACT
GTCGTGACTGAGGTTGTCGACAAGTACGTCACGTACTGCCCGGGCCCTACCTCCATCGTACACGGCTCCAAGACC
TACACCGTCACTGAGGTATGACTTGACGCCGTGGACGCGGTTTGCACGCACACCATGAGCTGACGAGAACTTCAG
GCCACCACTCTGACAATCACCGACTGCCCTTGCACCATTACCAAGCCCGTCATGACGGTTTCGTCTGTCATCTGC
CACACTTGGTATGTTGCATGATTGGGCTCTGTTTTGAAGTTGGCACATGCTAACAATGCGGCAGCGCCCCCAGCA
GCTCCGCCAACCCCGTCTATACTCCTGTCCCTAGCAGCCCTGCTGCCCCTAACAGCCCTGCCGTCCCTGTTCCCG
CGCTGTCGTCTGGCTACAGCAATGGTACCGCGCCCGCGGGCAAGCCATCCGTCGTTGCTCCCACAAACACCCCCG
AGGCTGGTGTGCCCATTGGCACTGGTGTCCCCCCGCCTGCCGGTGGCGTGTCGGTTACTAGCGCACCCACCACGG
TTCCCACCGCCGGTGCTGCCGGTGTTGCTGCTCTCTCTGGCGCCGGTCTTGTCGGTCTCGTTGGCTTCGTTGCTC
TGGTGCTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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