© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|5274 |
| Gene name | |
| Location | Contig_4:206077..207619 |
| Strand | + |
| Gene length (bp) | 1542 |
| Transcript length (bp) | 1209 |
| Coding sequence length (bp) | 1209 |
| Protein length (aa) | 403 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00098 | zf-CCHC | Zinc knuckle | 5.6E-05 | 61 | 77 |
| PF00098 | zf-CCHC | Zinc knuckle | 5.4E-04 | 211 | 226 |
| PF00098 | zf-CCHC | Zinc knuckle | 2.3E-03 | 237 | 253 |
| PF00098 | zf-CCHC | Zinc knuckle | 4.0E-05 | 260 | 276 |
| PF00098 | zf-CCHC | Zinc knuckle | 4.4E-06 | 284 | 300 |
| PF00098 | zf-CCHC | Zinc knuckle | 1.4E-07 | 305 | 321 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O76743|GLH4_CAEEL | ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4 PE=1 SV=2 | 211 | 325 | 4.0E-22 |
| sp|P62634|CNBP_RAT | Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1 | 198 | 349 | 8.0E-15 |
| sp|Q5R5R5|CNBP_PONAB | Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1 | 198 | 349 | 8.0E-15 |
| sp|P62633|CNBP_HUMAN | Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1 | 198 | 349 | 8.0E-15 |
| sp|P53996|CNBP_MOUSE | Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=1 SV=2 | 198 | 349 | 9.0E-15 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O76743|GLH4_CAEEL | ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4 PE=1 SV=2 | 211 | 325 | 4.0E-22 |
| sp|P62634|CNBP_RAT | Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1 | 198 | 349 | 8.0E-15 |
| sp|Q5R5R5|CNBP_PONAB | Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1 | 198 | 349 | 8.0E-15 |
| sp|P62633|CNBP_HUMAN | Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1 | 198 | 349 | 8.0E-15 |
| sp|P53996|CNBP_MOUSE | Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=1 SV=2 | 198 | 349 | 9.0E-15 |
| sp|Q3T0Q6|CNBP_BOVIN | Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1 | 203 | 349 | 1.0E-14 |
| sp|P36627|BYR3_SCHPO | Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1 | 209 | 344 | 2.0E-14 |
| sp|O42395|CNBP_CHICK | Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1 | 203 | 349 | 4.0E-14 |
| sp|P53849|GIS2_YEAST | Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1 | 211 | 321 | 6.0E-14 |
| sp|Q04832|HEXP_LEIMA | DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 | 248 | 372 | 2.0E-12 |
| sp|P53849|GIS2_YEAST | Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1 | 211 | 343 | 4.0E-12 |
| sp|P53849|GIS2_YEAST | Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1 | 170 | 301 | 1.0E-11 |
| sp|O65639|CSP1_ARATH | Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1 | 211 | 363 | 2.0E-11 |
| sp|Q04832|HEXP_LEIMA | DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 | 211 | 320 | 8.0E-11 |
| sp|Q8T8R1|Y3800_DROME | CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster GN=CG3800 PE=1 SV=1 | 211 | 319 | 8.0E-11 |
| sp|Q8WW36|ZCH13_HUMAN | Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens GN=ZCCHC13 PE=1 SV=1 | 261 | 343 | 7.0E-10 |
| sp|Q8WW36|ZCH13_HUMAN | Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens GN=ZCCHC13 PE=1 SV=1 | 237 | 323 | 6.0E-09 |
| sp|P36627|BYR3_SCHPO | Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1 | 233 | 319 | 2.0E-08 |
| sp|Q04832|HEXP_LEIMA | DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 | 207 | 320 | 2.0E-08 |
| sp|O65639|CSP1_ARATH | Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1 | 204 | 302 | 2.0E-08 |
| sp|O76743|GLH4_CAEEL | ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4 PE=1 SV=2 | 285 | 346 | 3.0E-08 |
| sp|Q12476|AIR2_YEAST | Protein AIR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIR2 PE=1 SV=1 | 261 | 343 | 7.0E-08 |
| sp|Q04832|HEXP_LEIMA | DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 | 210 | 320 | 8.0E-08 |
| sp|Q966L9|GLH2_CAEEL | ATP-dependent RNA helicase glh-2 OS=Caenorhabditis elegans GN=glh-2 PE=1 SV=1 | 211 | 299 | 1.0E-07 |
| sp|Q12476|AIR2_YEAST | Protein AIR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIR2 PE=1 SV=1 | 198 | 323 | 6.0E-07 |
| sp|P40507|AIR1_YEAST | Protein AIR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIR1 PE=1 SV=1 | 261 | 343 | 7.0E-07 |
| sp|Q8WW36|ZCH13_HUMAN | Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens GN=ZCCHC13 PE=1 SV=1 | 210 | 301 | 8.0E-07 |
| sp|P34689|GLH1_CAEEL | ATP-dependent RNA helicase glh-1 OS=Caenorhabditis elegans GN=glh-1 PE=1 SV=3 | 211 | 299 | 1.0E-06 |
| sp|Q65XV7|RFA1C_ORYSJ | Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1 | 261 | 320 | 3.0E-06 |
| sp|Q8T8R1|Y3800_DROME | CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster GN=CG3800 PE=1 SV=1 | 255 | 343 | 7.0E-06 |
| sp|Q65XV7|RFA1C_ORYSJ | Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1 | 260 | 338 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0046872 | metal ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Zinc finger, CCHC-type |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|5274 MDNTWGEIDNTWGEMDNTGGAGDAWGSGPADIIPSYTAVTPGDDGGGEKLPEKPVARVSLKCYGCGQIGHRAVEC TNPRLVNRDHVADMSPDEAWAKLRSAVAERDVDDVKEAINEYVKAVNADITFRELQEALLDNGIKLFLIATEKPL MKVLTNMDLQGNLGKKYSISYRFSEYADRPREVESFPKTREELLARLDDAGDIVNKGVPLCRNCDELGHISKYCP KEKVIFERPKIICSNCNLEGHRIRDCKEPRKDKFACRNCGKSGHKAADCDEPPNLNNVQCRKCDEYGHFAKDCPK ASAIVCRNCDQEGHMSRDCPQPRDWSKVQCSNCQLFGHTRVRCKAPVAAPSDEFGSGDFGSKNNSAEADNGFPAA PDDVPAAQTHVERAWGPETGGGWEGGW* |
| Coding | >OphauB2|5274 ATGGACAACACTTGGGGAGAAATTGACAACACTTGGGGAGAAATGGACAACACTGGGGGAGCTGGTGATGCCTGG GGCTCAGGCCCAGCAGACATAATTCCGTCTTATACCGCAGTTACTCCAGGTGACGATGGCGGAGGAGAAAAGCTT CCGGAGAAGCCTGTGGCCAGGGTCAGTCTGAAATGCTACGGATGCGGCCAAATTGGCCATCGTGCCGTGGAGTGC ACCAATCCACGCCTTGTTAATCGGGATCATGTCGCCGACATGAGTCCCGACGAGGCATGGGCGAAACTTAGAAGT GCAGTTGCTGAGCGCGATGTGGACGATGTGAAGGAGGCCATCAATGAATATGTCAAGGCCGTCAATGCAGACATC ACGTTCCGCGAGCTTCAAGAGGCCCTGCTCGACAACGGCATCAAACTCTTCCTCATTGCCACTGAGAAGCCTCTC ATGAAGGTTCTCACTAATATGGATCTCCAAGGCAACCTTGGAAAGAAGTATAGCATCTCTTACCGCTTTTCGGAG TATGCCGATCGTCCTCGAGAGGTCGAAAGCTTCCCCAAGACTCGCGAAGAGCTTTTGGCTCGTTTGGATGACGCT GGCGACATCGTCAATAAGGGAGTGCCCCTTTGCCGCAACTGCGATGAACTAGGACACATCTCAAAGTATTGTCCC AAGGAGAAGGTTATATTTGAACGCCCCAAGATCATCTGCAGCAACTGTAACCTTGAGGGACACCGCATTCGTGAT TGCAAGGAGCCACGCAAGGATAAATTCGCTTGCAGAAACTGCGGAAAATCCGGGCACAAGGCAGCGGATTGCGAC GAGCCGCCCAATCTGAACAATGTACAGTGTCGAAAGTGCGACGAGTACGGACACTTTGCCAAAGACTGCCCCAAG GCCAGTGCCATTGTTTGTCGCAATTGTGACCAGGAAGGACACATGAGCCGTGATTGTCCTCAGCCCAGGGACTGG TCCAAGGTTCAATGTAGCAATTGCCAGCTCTTCGGGCACACCAGAGTGAGGTGCAAGGCCCCCGTGGCTGCTCCC TCTGATGAATTTGGTAGCGGAGACTTTGGCAGCAAGAATAACAGCGCTGAGGCTGACAATGGGTTTCCTGCTGCT CCTGATGATGTTCCCGCTGCTCAAACTCATGTTGAGCGTGCTTGGGGCCCTGAAACTGGTGGTGGCTGGGAGGGA GGTTGGTAA |
| Transcript | >OphauB2|5274 ATGGACAACACTTGGGGAGAAATTGACAACACTTGGGGAGAAATGGACAACACTGGGGGAGCTGGTGATGCCTGG GGCTCAGGCCCAGCAGACATAATTCCGTCTTATACCGCAGTTACTCCAGGTGACGATGGCGGAGGAGAAAAGCTT CCGGAGAAGCCTGTGGCCAGGGTCAGTCTGAAATGCTACGGATGCGGCCAAATTGGCCATCGTGCCGTGGAGTGC ACCAATCCACGCCTTGTTAATCGGGATCATGTCGCCGACATGAGTCCCGACGAGGCATGGGCGAAACTTAGAAGT GCAGTTGCTGAGCGCGATGTGGACGATGTGAAGGAGGCCATCAATGAATATGTCAAGGCCGTCAATGCAGACATC ACGTTCCGCGAGCTTCAAGAGGCCCTGCTCGACAACGGCATCAAACTCTTCCTCATTGCCACTGAGAAGCCTCTC ATGAAGGTTCTCACTAATATGGATCTCCAAGGCAACCTTGGAAAGAAGTATAGCATCTCTTACCGCTTTTCGGAG TATGCCGATCGTCCTCGAGAGGTCGAAAGCTTCCCCAAGACTCGCGAAGAGCTTTTGGCTCGTTTGGATGACGCT GGCGACATCGTCAATAAGGGAGTGCCCCTTTGCCGCAACTGCGATGAACTAGGACACATCTCAAAGTATTGTCCC AAGGAGAAGGTTATATTTGAACGCCCCAAGATCATCTGCAGCAACTGTAACCTTGAGGGACACCGCATTCGTGAT TGCAAGGAGCCACGCAAGGATAAATTCGCTTGCAGAAACTGCGGAAAATCCGGGCACAAGGCAGCGGATTGCGAC GAGCCGCCCAATCTGAACAATGTACAGTGTCGAAAGTGCGACGAGTACGGACACTTTGCCAAAGACTGCCCCAAG GCCAGTGCCATTGTTTGTCGCAATTGTGACCAGGAAGGACACATGAGCCGTGATTGTCCTCAGCCCAGGGACTGG TCCAAGGTTCAATGTAGCAATTGCCAGCTCTTCGGGCACACCAGAGTGAGGTGCAAGGCCCCCGTGGCTGCTCCC TCTGATGAATTTGGTAGCGGAGACTTTGGCAGCAAGAATAACAGCGCTGAGGCTGACAATGGGTTTCCTGCTGCT CCTGATGATGTTCCCGCTGCTCAAACTCATGTTGAGCGTGCTTGGGGCCCTGAAACTGGTGGTGGCTGGGAGGGA GGTTGGTAA |
| Gene | >OphauB2|5274 ATGGACAACACTTGGGGAGAAATTGACAACACTTGGGGAGAAATGGACAACACTGGGGGAGCTGGTGATGCCTGG GGCTCAGGCCCAGCAGACATAATTCCGTCTTATACCGCAGTTACTCCAGGTGACGATGGCGGAGGGTGAGTTACA CACGTTACCGCCTCATTCGTCGTAGGATTATTATTGACCACTTCTTTTAGAGAAAAGCTTCCGGAGAAGCCTGTG GCCAGGGTCAGTCTGAAATGCTACGGATGCGGCCAAATTGGGTAAGCTCACACTTTGTTTAAGCATTCAATGGCC TTGCTGACAGGCCTTTAGCCATCGTGCCGTGGAGTGCACCAATCCACGCCTTGTTAATCGGGATCATGTCGCCGA CATGAGTCCCGACGAGGCATGGGCGAAACTTAGAAGTGCAGTTGCTGAGCGCGATGTGGACGATGTGAAGGAGGC CATCAATGAATATGTCAAGGCCGTCAATGCAGACATCACGTTCCGCGAGCTTCAAGAGGCCCTGCTCGACAACGG CATCAAACTCTTCCTCATTGCCACTGAGAAGCCTCTCATGAAGGTTCTCACTAATATGGATCTCCAAGGCAACCT TGGAAAGAAGTATAGCATCTCTTACCGCTTTTCGGAGTATGCCGATCGTCCTCGAGAGGTCGAAAGCTTCCCCAA GACTCGCGAAGAGCTTTTGGCTCGTTTGGATGACGCTGGCGACATCGTCAATAAGGGAGTGCCCCTTTGCCGCAA CTGCGATGAACTAGGACACATCTCAAAGTATTGTCCCAAGGAGAAGGTTATATTTGAACGCCCCAAGATCATCTG CAGCAACTGTAACCTTGAGGGACACCGCATTCGTGATTGTAAGATATATTGATTCAAGTCTTAACGATGAGGCAA TGCTAATCTGTTCAACAGGCAAGGAGCCACGCAAGGATAAATTCGCTTGCAGAAACTGCGGGTGAGTCTGCTGCA TTGCAGTTTTGGCCGACCTGTTCATCGCTTACTGGAGTACAGAAAATCCGGGCACAAGGCAGCGGATTGCGACGA GCCGCCCAATCTGAACAATGTACAGTGTCGAAAGTGCGACGAGTGTAAGTTTGCTTGCTGACACCGTACGACAAT GGCTATATGCTAATTATGGTTTTGCTAGACGGACACTTTGCCAAAGACTGCCCCAAGGCCAGTGCCATTGTTTGT CGCAATTGTGACCAGGAAGGACACATGAGCCGTGATTGTCCTCAGCCCAGGGACTGTGAGTAGCCTGCCAAGATT GAACTCATTTACTATTGCTAACAGGAAGCAGGGTCCAAGGTTCAATGTAGCAATTGCCAGCTCTTCGGGCACACC AGAGTGAGGTGCAAGGCCCCCGTGGCTGCTCCCTCTGATGAATTTGGTAGCGGAGACTTTGGCAGCAAGAATAAC AGCGCTGAGGCTGACAATGGGTTTCCTGCTGCTCCTGATGATGTTCCCGCTGCTCAAACTCATGTTGAGCGTGCT TGGGGCCCTGAAACTGGTGGTGGCTGGGAGGGAGGTTGGTAA |