Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|5262
Gene name
LocationContig_4:160721..161172
Strand-
Gene length (bp)451
Transcript length (bp)393
Coding sequence length (bp)393
Protein length (aa) 131

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02656 DUF202 Domain of unknown function (DUF202) 1.3E-15 24 85

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9UR17|VTC1_SCHPO Vacuolar transporter chaperone 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nrf1 PE=2 SV=1 1 121 4.0E-54
sp|P40046|VTC1_YEAST Vacuolar transporter chaperone 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC1 PE=1 SV=3 1 128 8.0E-52
sp|P78810|VTC4_SCHPO Vacuolar transporter chaperone 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vtc4 PE=1 SV=2 9 118 8.0E-23
sp|P47075|VTC4_YEAST Vacuolar transporter chaperone 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC4 PE=1 SV=2 7 116 2.0E-21
sp|O13718|VTC2_SCHPO Vacuolar transporter chaperone 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vtc2 PE=1 SV=1 14 122 1.0E-14
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[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9UR17|VTC1_SCHPO Vacuolar transporter chaperone 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nrf1 PE=2 SV=1 1 121 4.0E-54
sp|P40046|VTC1_YEAST Vacuolar transporter chaperone 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC1 PE=1 SV=3 1 128 8.0E-52
sp|P78810|VTC4_SCHPO Vacuolar transporter chaperone 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vtc4 PE=1 SV=2 9 118 8.0E-23
sp|P47075|VTC4_YEAST Vacuolar transporter chaperone 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC4 PE=1 SV=2 7 116 2.0E-21
sp|O13718|VTC2_SCHPO Vacuolar transporter chaperone 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vtc2 PE=1 SV=1 14 122 1.0E-14
sp|Q02725|VTC3_YEAST Vacuolar transporter chaperone 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC3 PE=1 SV=1 16 128 2.0E-13
sp|P43585|VTC2_YEAST Vacuolar transporter chaperone 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC2 PE=1 SV=1 16 128 3.0E-13
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 69 0.5

Transmembrane Domains

Domain # Start End Length
1 32 54 22
2 57 79 22
3 99 118 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|5262
MSSQPLLQTAPGKRIALPTRVEPKVFFANERTFLSWLNFTVILGALAIGMLNFGDRVAFISAFLFTGVAMLCMIY
ALVTYHWRAKSIRIRGQAGFDDRFGPTFLAIILLLAVVVNFVLRIMDQSKKQKHG*
Coding >OphauB2|5262
ATGTCTTCGCAGCCCCTTCTTCAAACTGCTCCTGGCAAGCGCATCGCCCTGCCGACCCGCGTTGAGCCCAAGGTC
TTTTTTGCCAATGAGCGCACCTTTTTATCATGGCTCAACTTTACCGTCATTCTTGGCGCCTTGGCCATTGGTATG
CTCAACTTTGGCGATCGCGTCGCCTTCATCTCGGCCTTTCTGTTTACAGGCGTCGCCATGTTATGTATGATCTAC
GCGTTGGTGACTTATCACTGGCGAGCGAAATCGATACGAATAAGGGGGCAGGCTGGCTTTGACGACCGATTTGGG
CCAACCTTTCTCGCCATTATTCTCTTGCTGGCCGTTGTGGTCAACTTTGTCCTTCGCATCATGGACCAGTCCAAG
AAGCAGAAGCACGGCTAG
Transcript >OphauB2|5262
ATGTCTTCGCAGCCCCTTCTTCAAACTGCTCCTGGCAAGCGCATCGCCCTGCCGACCCGCGTTGAGCCCAAGGTC
TTTTTTGCCAATGAGCGCACCTTTTTATCATGGCTCAACTTTACCGTCATTCTTGGCGCCTTGGCCATTGGTATG
CTCAACTTTGGCGATCGCGTCGCCTTCATCTCGGCCTTTCTGTTTACAGGCGTCGCCATGTTATGTATGATCTAC
GCGTTGGTGACTTATCACTGGCGAGCGAAATCGATACGAATAAGGGGGCAGGCTGGCTTTGACGACCGATTTGGG
CCAACCTTTCTCGCCATTATTCTCTTGCTGGCCGTTGTGGTCAACTTTGTCCTTCGCATCATGGACCAGTCCAAG
AAGCAGAAGCACGGCTAG
Gene >OphauB2|5262
ATGTCTTCGCAGCCCCTTCTTCAAACTGCTCCTGGTGCGTTCTCCGAAAAATCTCCGCGCTGCTGCACAAGCTAG
CTGACGGCCTCCTTCAGGCAAGCGCATCGCCCTGCCGACCCGCGTTGAGCCCAAGGTCTTTTTTGCCAATGAGCG
CACCTTTTTATCATGGCTCAACTTTACCGTCATTCTTGGCGCCTTGGCCATTGGTATGCTCAACTTTGGCGATCG
CGTCGCCTTCATCTCGGCCTTTCTGTTTACAGGCGTCGCCATGTTATGTATGATCTACGCGTTGGTGACTTATCA
CTGGCGAGCGAAATCGATACGAATAAGGGGGCAGGCTGGCTTTGACGACCGATTTGGGCCAACCTTTCTCGCCAT
TATTCTCTTGCTGGCCGTTGTGGTCAACTTTGTCCTTCGCATCATGGACCAGTCCAAGAAGCAGAAGCACGGCTA
G

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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