© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|5237 |
| Gene name | |
| Location | Contig_4:97931..99729 |
| Strand | - |
| Gene length (bp) | 1798 |
| Transcript length (bp) | 1629 |
| Coding sequence length (bp) | 1629 |
| Protein length (aa) | 543 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 7.9E-30 | 64 | 451 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13880|VHT1_SCHPO | Vitamin H transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vht1 PE=2 SV=1 | 39 | 492 | 5.0E-118 |
| sp|O13879|YE1F_SCHPO | Uncharacterized transporter C1B3.15C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B3.15c PE=3 SV=1 | 46 | 542 | 1.0E-115 |
| sp|P70786|TUB3_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 50 | 317 | 3.0E-35 |
| sp|Q44470|TUB4_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 50 | 317 | 8.0E-35 |
| sp|Q9P6J0|YHDC_SCHPO | Uncharacterized transporter C1683.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.12 PE=3 SV=1 | 15 | 453 | 1.0E-30 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13880|VHT1_SCHPO | Vitamin H transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vht1 PE=2 SV=1 | 39 | 492 | 5.0E-118 |
| sp|O13879|YE1F_SCHPO | Uncharacterized transporter C1B3.15C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B3.15c PE=3 SV=1 | 46 | 542 | 1.0E-115 |
| sp|P70786|TUB3_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 50 | 317 | 3.0E-35 |
| sp|Q44470|TUB4_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 50 | 317 | 8.0E-35 |
| sp|Q9P6J0|YHDC_SCHPO | Uncharacterized transporter C1683.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.12 PE=3 SV=1 | 15 | 453 | 1.0E-30 |
| sp|Q88FY6|NICT_PSEPK | Putative metabolite transport protein NicT OS=Pseudomonas putida (strain KT2440) GN=nicT PE=2 SV=1 | 49 | 304 | 2.0E-28 |
| sp|Q9US44|YIZG_SCHPO | Uncharacterized transporter C1002.16c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1002.16c PE=3 SV=1 | 10 | 372 | 9.0E-25 |
| sp|P76470|RHMT_ECOLI | Inner membrane transport protein RhmT OS=Escherichia coli (strain K12) GN=rhmT PE=1 SV=2 | 47 | 396 | 5.0E-19 |
| sp|Q9US37|YFZ4_SCHPO | Uncharacterized transporter C1039.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1039.04 PE=3 SV=1 | 36 | 247 | 2.0E-17 |
| sp|Q10097|YAOI_SCHPO | Uncharacterized transporter C11D3.18C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.18c PE=3 SV=1 | 10 | 415 | 3.0E-17 |
| sp|O43000|LIZ1_SCHPO | Pantothenate transporter liz1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=liz1 PE=2 SV=2 | 46 | 315 | 2.0E-16 |
| sp|P53322|TNA1_YEAST | High-affinity nicotinic acid transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TNA1 PE=1 SV=1 | 44 | 446 | 8.0E-16 |
| sp|Q05181|PHT1_PSEPU | Phthalate transporter OS=Pseudomonas putida GN=pht1 PE=3 SV=1 | 46 | 381 | 3.0E-14 |
| sp|P40445|YIQ6_YEAST | Uncharacterized transporter YIL166C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIL166C PE=1 SV=1 | 49 | 438 | 9.0E-13 |
| sp|Q07904|THI73_YEAST | Thiamine pathway transporter THI73 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=THI73 PE=1 SV=1 | 46 | 259 | 2.0E-09 |
| sp|P39709|SEO1_YEAST | Probable transporter SEO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEO1 PE=1 SV=1 | 95 | 250 | 1.0E-07 |
| sp|P25621|FEN2_YEAST | Pantothenate transporter FEN2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FEN2 PE=1 SV=1 | 95 | 362 | 1.0E-07 |
| sp|P0CF20|YO163_YEAST | Putative uncharacterized transporter YOL163W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL163W PE=5 SV=1 | 155 | 273 | 3.0E-06 |
| sp|P53241|VHT1_YEAST | Vitamin H transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VHT1 PE=1 SV=1 | 50 | 230 | 3.0E-06 |
| sp|P27669|UHPC_SALTY | Regulatory protein UhpC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=uhpC PE=3 SV=1 | 46 | 252 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 54 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 60 | 82 | 22 |
| 2 | 102 | 124 | 22 |
| 3 | 131 | 153 | 22 |
| 4 | 158 | 180 | 22 |
| 5 | 192 | 214 | 22 |
| 6 | 224 | 246 | 22 |
| 7 | 313 | 335 | 22 |
| 8 | 345 | 367 | 22 |
| 9 | 374 | 396 | 22 |
| 10 | 406 | 428 | 22 |
| 11 | 435 | 457 | 22 |
| 12 | 480 | 502 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|5237 MNSSSPVPGKSGSKTSSDEAPISIDISQPLARPQQGENEQQDFPVEVIERIYRKLDWRIIPPFWILYFLCSAIRS NIGIAQTMNRDDKHDLVSVLGLSSRDVSTALALFYVSYVVFDFPSNLIMSKLSPRVWMARIVFATGLVGACFAAI QDAWSLKLLRFLLGLVVAGMWPGMAFYLTLFYPPSRTGKRIGMYYTAAQVSAAAASLVSAGFQLMDGVGGLTGFR WMFLIYGLVTIVLSFVLLWWLPERPLAPNQERQVSPWLKWLPETPEPLTGRDATIHYHDLTRVYNARPWTLGDLG WAMLDWRLWPLCLMYFGVVGVGIGTQLYGSVIIAAIRPQATDIQVSLLFAPVWIMDLIAILVIVPISDRFHHYRA FFFSAAACVQIAGLLTMTFAVDNGWARYGGMLMVGFGLGPTVPTCMAWTSEIFQRRHGQVGVAAATALVSGLGNL GSVTTTYALYTGWAEDAKQGKHQFRMSNLAMIGILAMSITSALVMKTLLILLGNAPSSRLGKAGAIQDGAARREL QQRGFGNLGRRKRDDAS* |
| Coding | >OphauB2|5237 ATGAATTCATCCAGTCCAGTGCCGGGGAAGAGCGGCAGCAAGACGTCCAGCGATGAGGCGCCAATATCCATTGAC ATTTCTCAGCCCTTGGCGAGGCCACAACAAGGCGAAAATGAGCAGCAAGACTTTCCAGTAGAGGTGATTGAGCGG ATATATAGGAAACTAGACTGGAGGATTATACCGCCCTTTTGGATCCTTTACTTCCTCTGCTCTGCCATTCGCTCA AACATTGGCATTGCTCAGACTATGAACCGAGACGACAAGCACGATCTTGTCTCGGTGCTTGGCCTCTCTTCACGC GATGTTTCCACCGCCCTTGCGCTCTTTTACGTCTCCTACGTCGTCTTTGACTTTCCCTCAAATCTCATCATGAGC AAGCTGAGTCCCAGGGTATGGATGGCCCGCATCGTCTTTGCCACGGGGCTGGTAGGGGCATGCTTTGCTGCCATT CAAGATGCCTGGAGTCTCAAGCTCCTGCGCTTTCTGCTCGGCCTTGTTGTGGCTGGCATGTGGCCTGGCATGGCC TTTTACCTGACTCTCTTTTATCCGCCATCACGAACTGGCAAGCGCATTGGCATGTACTATACTGCTGCCCAAGTC TCTGCCGCTGCTGCCAGCTTGGTCTCTGCCGGCTTCCAGCTCATGGACGGGGTCGGAGGGCTGACGGGCTTTCGC TGGATGTTTTTGATATACGGCTTGGTGACAATTGTCCTGAGCTTTGTCCTGCTATGGTGGCTTCCCGAGCGGCCG CTTGCGCCGAATCAAGAGCGTCAGGTGTCGCCTTGGCTAAAGTGGCTGCCTGAAACTCCTGAGCCTCTGACGGGA CGCGATGCCACCATTCACTATCACGATCTGACACGCGTCTATAATGCTCGGCCCTGGACATTGGGGGATTTAGGA TGGGCTATGCTAGACTGGCGCCTATGGCCATTGTGTCTCATGTACTTTGGCGTGGTTGGTGTGGGAATCGGCACG CAGCTTTACGGCTCCGTCATTATTGCAGCCATTCGGCCGCAAGCAACCGACATTCAAGTGTCTTTATTGTTTGCA CCTGTGTGGATTATGGACCTGATTGCCATTCTGGTAATTGTGCCCATTTCAGATCGCTTCCACCATTACCGCGCC TTCTTTTTTTCAGCCGCTGCCTGTGTGCAGATTGCAGGACTTTTGACCATGACATTTGCCGTTGACAACGGCTGG GCGCGCTATGGAGGGATGCTCATGGTGGGATTTGGGCTCGGGCCTACTGTACCAACCTGCATGGCCTGGACCTCT GAGATATTCCAGCGTCGCCACGGTCAAGTCGGAGTAGCTGCCGCAACAGCGCTTGTGTCCGGGTTAGGCAATCTC GGCAGTGTGACGACGACGTATGCGCTATATACAGGCTGGGCTGAGGACGCAAAACAGGGCAAGCACCAGTTCCGC ATGAGCAACTTGGCCATGATTGGCATCTTGGCAATGAGCATCACCAGTGCCTTGGTTATGAAGACTCTGCTCATC CTACTTGGCAACGCACCGAGTTCAAGACTGGGTAAAGCCGGCGCTATTCAAGACGGCGCCGCTCGTCGAGAATTG CAGCAGCGAGGTTTTGGCAATCTCGGCCGACGCAAGAGGGATGATGCCAGCTAG |
| Transcript | >OphauB2|5237 ATGAATTCATCCAGTCCAGTGCCGGGGAAGAGCGGCAGCAAGACGTCCAGCGATGAGGCGCCAATATCCATTGAC ATTTCTCAGCCCTTGGCGAGGCCACAACAAGGCGAAAATGAGCAGCAAGACTTTCCAGTAGAGGTGATTGAGCGG ATATATAGGAAACTAGACTGGAGGATTATACCGCCCTTTTGGATCCTTTACTTCCTCTGCTCTGCCATTCGCTCA AACATTGGCATTGCTCAGACTATGAACCGAGACGACAAGCACGATCTTGTCTCGGTGCTTGGCCTCTCTTCACGC GATGTTTCCACCGCCCTTGCGCTCTTTTACGTCTCCTACGTCGTCTTTGACTTTCCCTCAAATCTCATCATGAGC AAGCTGAGTCCCAGGGTATGGATGGCCCGCATCGTCTTTGCCACGGGGCTGGTAGGGGCATGCTTTGCTGCCATT CAAGATGCCTGGAGTCTCAAGCTCCTGCGCTTTCTGCTCGGCCTTGTTGTGGCTGGCATGTGGCCTGGCATGGCC TTTTACCTGACTCTCTTTTATCCGCCATCACGAACTGGCAAGCGCATTGGCATGTACTATACTGCTGCCCAAGTC TCTGCCGCTGCTGCCAGCTTGGTCTCTGCCGGCTTCCAGCTCATGGACGGGGTCGGAGGGCTGACGGGCTTTCGC TGGATGTTTTTGATATACGGCTTGGTGACAATTGTCCTGAGCTTTGTCCTGCTATGGTGGCTTCCCGAGCGGCCG CTTGCGCCGAATCAAGAGCGTCAGGTGTCGCCTTGGCTAAAGTGGCTGCCTGAAACTCCTGAGCCTCTGACGGGA CGCGATGCCACCATTCACTATCACGATCTGACACGCGTCTATAATGCTCGGCCCTGGACATTGGGGGATTTAGGA TGGGCTATGCTAGACTGGCGCCTATGGCCATTGTGTCTCATGTACTTTGGCGTGGTTGGTGTGGGAATCGGCACG CAGCTTTACGGCTCCGTCATTATTGCAGCCATTCGGCCGCAAGCAACCGACATTCAAGTGTCTTTATTGTTTGCA CCTGTGTGGATTATGGACCTGATTGCCATTCTGGTAATTGTGCCCATTTCAGATCGCTTCCACCATTACCGCGCC TTCTTTTTTTCAGCCGCTGCCTGTGTGCAGATTGCAGGACTTTTGACCATGACATTTGCCGTTGACAACGGCTGG GCGCGCTATGGAGGGATGCTCATGGTGGGATTTGGGCTCGGGCCTACTGTACCAACCTGCATGGCCTGGACCTCT GAGATATTCCAGCGTCGCCACGGTCAAGTCGGAGTAGCTGCCGCAACAGCGCTTGTGTCCGGGTTAGGCAATCTC GGCAGTGTGACGACGACGTATGCGCTATATACAGGCTGGGCTGAGGACGCAAAACAGGGCAAGCACCAGTTCCGC ATGAGCAACTTGGCCATGATTGGCATCTTGGCAATGAGCATCACCAGTGCCTTGGTTATGAAGACTCTGCTCATC CTACTTGGCAACGCACCGAGTTCAAGACTGGGTAAAGCCGGCGCTATTCAAGACGGCGCCGCTCGTCGAGAATTG CAGCAGCGAGGTTTTGGCAATCTCGGCCGACGCAAGAGGGATGATGCCAGCTAG |
| Gene | >OphauB2|5237 ATGAATTCATCCAGTCCAGTGCCGGGGAAGAGCGGCAGCAAGACGTCCAGCGATGAGGCGCCAATATCCATTGAC ATTTCTCAGCCCTTGGCGAGGCCACAACAAGGCGAAAATGAGCAGCAAGACTTTCCAGTAGAGGTGATTGAGCGG ATATATAGGTACGTCTTGAAGTTATCCATTCCCCCCCTGTACCGTCTGCTAACTTGGGGTAGGAAACTAGACTGG AGGATTATACCGCGTAGGATGCCTCATATCCCAAACAGTCAGCGTCGGCTAATGCAGACAGCATGTAGCCTTTTG GATCCTTTACTTCCTCTGCTCTGCCATTCGCTCAAACATTGGCATTGCTCAGACTATGAACCGAGACGACAAGCA CGATCTTGTCTCGGTGCTTGGCCTCTCTTCACGCGATGTTTCCACCGCCCTTGCGCTCTTTTACGTCTCCTACGT CGTCTTTGACTTTCCCTCAAATCTCATCATGAGCAAGCTGAGTCCCAGGGTATGGATGGCCCGCATCGTCTTTGC CACGGGGCTGGTAGGGGCATGCTTTGCTGCCATTCAAGATGCCTGGAGTCTCAAGCTCCTGCGCTTTCTGCTCGG CCTTGTTGTGGCTGGCATGTGGCCTGGCATGGCCTTTTACCTGACTCTCTTTTATCCGCCATCACGAACTGGCAA GCGCATTGGCATGTACTATACTGCTGCCCAAGTCTCTGCCGCTGCTGCCAGCTTGGTCTCTGCCGGCTTCCAGCT CATGGACGGGGTCGGAGGGCTGACGGGCTTTCGCTGGATGTTTTTGATATACGGCTTGGTGACAATTGTCCTGAG CTTTGTCCTGCTATGGTGGCTTCCCGAGCGGCCGCTTGCGCCGAATCAAGAGCGTCAGGTGTCGCCTTGGCTAAA GTGGCTGCCTGAAACTCCTGAGCCTCTGACGGGACGCGATGCCACCATTCACTATCACGATCTGACACGCGTCTA TAATGCTCGGCCCTGGACATTGGGGGATTTAGGATGGGCTATGCTAGACTGGCGCCTATGGCCATTGTGTCTCAT GTACTTTGGCGTGGTTGGTGTGGGAATCGGCACGCAGCTTTACGGCTCCGTCATTATTGCAGCCATTCGGCCGCA AGCAACCGACATTCAAGTGTCTTTATTGTTTGCACCTGTGTGGATTGTAAGTCTTTTCTCCTGCTGATGCCTTGT CCTATTCAAGCCTGTCTAACCAATGCGCCAGATGGACCTGATTGCCATTCTGGTAATTGTGCCCATTTCAGATCG CTTCCACCATTACCGCGCCTTCTTTTTTTCAGCCGCTGCCTGTGTGCAGATTGCAGGACTTTTGACCATGACATT TGCCGTTGACAACGGCTGGGCGCGCTATGGAGGGATGCTCATGGTGGGATTTGGGCTCGGGCCTACTGTACCAAC CTGCATGGCCTGGACCTCTGAGATATTCCAGCGTCGCCACGGTCAAGTCGGAGTAGCTGCCGCAACAGCGCTTGT GTCCGGGTTAGGCAATCTCGGCAGTGTGACGACGACGTATGCGCTATATACAGGCTGGGCTGAGGACGCAAAACA GGGCAAGCACCAGTTCCGCATGAGCAACTTGGCCATGATTGGCATCTTGGCAATGAGCATCACCAGTGCCTTGGT TATGAAGACTCTGCTCATCCTACTTGGCAACGCACCGAGTTCAAGACTGGGTAAAGCCGGCGCTATTCAAGACGG CGCCGCTCGTCGAGAATTGCAGCAGCGAGGTTTTGGCAATCTCGGCCGACGCAAGAGGGATGATGCCAGCTAG |