© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|5190 |
| Gene name | |
| Location | Contig_39:117368..118908 |
| Strand | - |
| Gene length (bp) | 1540 |
| Transcript length (bp) | 1437 |
| Coding sequence length (bp) | 1437 |
| Protein length (aa) | 479 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07946 | CCDC47 | PAT complex subunit CCDC47 | 1.9E-111 | 119 | 469 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94280|YGX1_SCHPO | UPF0674 endoplasmic reticulum membrane protein C2G5.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2G5.01 PE=3 SV=1 | 119 | 418 | 9.0E-19 |
| sp|P53723|YN8B_YEAST | UPF0674 endoplasmic reticulum membrane protein YNR021W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNR021W PE=1 SV=3 | 106 | 477 | 2.0E-15 |
| sp|Q66I12|CCD47_DANRE | Coiled-coil domain-containing protein 47 OS=Danio rerio GN=ccdc47 PE=2 SV=1 | 112 | 348 | 4.0E-09 |
| sp|Q5RCI4|CCD47_PONAB | Coiled-coil domain-containing protein 47 OS=Pongo abelii GN=CCDC47 PE=2 SV=2 | 112 | 474 | 2.0E-08 |
| sp|P0C204|CCD47_MACFA | Coiled-coil domain-containing protein 47 OS=Macaca fascicularis GN=CCDC47 PE=2 SV=1 | 112 | 474 | 3.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94280|YGX1_SCHPO | UPF0674 endoplasmic reticulum membrane protein C2G5.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2G5.01 PE=3 SV=1 | 119 | 418 | 9.0E-19 |
| sp|P53723|YN8B_YEAST | UPF0674 endoplasmic reticulum membrane protein YNR021W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNR021W PE=1 SV=3 | 106 | 477 | 2.0E-15 |
| sp|Q66I12|CCD47_DANRE | Coiled-coil domain-containing protein 47 OS=Danio rerio GN=ccdc47 PE=2 SV=1 | 112 | 348 | 4.0E-09 |
| sp|Q5RCI4|CCD47_PONAB | Coiled-coil domain-containing protein 47 OS=Pongo abelii GN=CCDC47 PE=2 SV=2 | 112 | 474 | 2.0E-08 |
| sp|P0C204|CCD47_MACFA | Coiled-coil domain-containing protein 47 OS=Macaca fascicularis GN=CCDC47 PE=2 SV=1 | 112 | 474 | 3.0E-08 |
| sp|Q3ZC50|CCD47_BOVIN | Coiled-coil domain-containing protein 47 OS=Bos taurus GN=CCDC47 PE=2 SV=1 | 112 | 474 | 7.0E-08 |
| sp|Q96A33|CCD47_HUMAN | Coiled-coil domain-containing protein 47 OS=Homo sapiens GN=CCDC47 PE=1 SV=1 | 112 | 474 | 8.0E-08 |
| sp|Q5U2X6|CCD47_RAT | Coiled-coil domain-containing protein 47 OS=Rattus norvegicus GN=Ccdc47 PE=2 SV=1 | 112 | 474 | 8.0E-08 |
| sp|Q9D024|CCD47_MOUSE | Coiled-coil domain-containing protein 47 OS=Mus musculus GN=Ccdc47 PE=1 SV=2 | 112 | 474 | 2.0E-07 |
| sp|Q6AZI2|CCD47_XENLA | Coiled-coil domain-containing protein 47 OS=Xenopus laevis GN=ccdc47 PE=2 SV=1 | 112 | 348 | 5.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0032469 | endoplasmic reticulum calcium ion homeostasis | Yes |
| GO:0005783 | endoplasmic reticulum | Yes |
| GO:0005509 | calcium ion binding | Yes |
| GO:0055080 | cation homeostasis | No |
| GO:0043226 | organelle | No |
| GO:0006874 | cellular calcium ion homeostasis | No |
| GO:0043167 | ion binding | No |
| GO:0055065 | metal ion homeostasis | No |
| GO:0019725 | cellular homeostasis | No |
| GO:0003674 | molecular_function | No |
| GO:0065008 | regulation of biological quality | No |
| GO:0005488 | binding | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0055074 | calcium ion homeostasis | No |
| GO:0030003 | cellular cation homeostasis | No |
| GO:0042592 | homeostatic process | No |
| GO:0006875 | cellular metal ion homeostasis | No |
| GO:0043229 | intracellular organelle | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0046872 | metal ion binding | No |
| GO:0098771 | inorganic ion homeostasis | No |
| GO:0043169 | cation binding | No |
| GO:0065007 | biological regulation | No |
| GO:0048878 | chemical homeostasis | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0072507 | divalent inorganic cation homeostasis | No |
| GO:0006873 | cellular ion homeostasis | No |
| GO:0072503 | cellular divalent inorganic cation homeostasis | No |
| GO:0009987 | cellular process | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0055082 | cellular chemical homeostasis | No |
| GO:0050801 | ion homeostasis | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 124 | 141 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|5190 MRPLDNIGTYSLISKIHNGSKSLDVLELGGLSFSSFDGDQEAAMADIVKNLFGGSKPEQPKAKKDADFADFAVAP EPQPESVPGTETAGDGAAAAAAAATPLQPFTKWYRVHDRHSLSEFKAEGVIIVLAAFIFIFHVLGARKNRSRARS WIRANAPVLKSEFALVGFGGVPNTDNDNELSGLLKENSLFEFATYATGRQNTAFVDVKMTLAKRFNPVLNATEAA ASFFTDMFSPPQDTVEAIIYPFDGKESLTVPSGPGLVEVRAKDGKSTYEGFVWAIVHKDRMQKLREERYDVTLAT TKDSPKLPNWLTVMSENSEITNMLLTPELIAAVTAAGDAFEHLIISDQPTDKPKTVDDVAPRKRLFLKYKLPSDD DYGKLTALLAYFLRLPDALVQEAHFRPEVLKKIRAIREAMITQIKKSHEEERNEERAAEKEKTRKAKRDAELKGL DAKAQKKYLGKEKEKELRRNQKKMTMRG* |
| Coding | >OphauB2|5190 ATGCGGCCGCTTGACAATATTGGTACGTACTCGCTGATCTCCAAAATTCACAACGGCTCCAAATCGTTGGACGTG CTGGAGCTCGGGGGCCTCTCCTTTTCGTCCTTTGACGGCGACCAAGAAGCAGCAATGGCCGATATCGTCAAGAAC TTGTTCGGAGGCTCCAAGCCGGAGCAACCAAAGGCCAAAAAAGATGCGGATTTTGCCGATTTTGCGGTAGCTCCT GAGCCCCAGCCTGAGTCGGTTCCTGGCACAGAGACGGCAGGTGATGGCGCCGCTGCTGCCGCTGCCGCTGCCACG CCCTTGCAGCCTTTCACCAAGTGGTATCGGGTTCATGACCGCCACTCTCTGTCTGAATTCAAGGCCGAGGGCGTG ATTATTGTCCTGGCGGCCTTTATATTCATCTTTCACGTTCTGGGCGCCCGCAAGAATCGGTCACGGGCGAGATCA TGGATCCGCGCCAACGCGCCTGTCCTCAAGAGCGAATTCGCGCTCGTTGGCTTTGGCGGTGTGCCAAACACGGAC AATGACAATGAGCTATCAGGACTGCTTAAGGAAAACTCACTCTTTGAGTTCGCTACATACGCCACAGGCCGACAG AACACAGCCTTTGTTGATGTAAAGATGACTTTGGCTAAGCGCTTCAACCCTGTATTGAATGCCACCGAGGCGGCT GCTTCCTTCTTCACCGACATGTTCTCACCGCCTCAGGACACGGTGGAGGCAATCATCTACCCCTTTGACGGCAAA GAAAGCCTCACGGTGCCCTCTGGTCCCGGGCTGGTCGAGGTGCGGGCCAAGGACGGCAAGAGCACCTATGAGGGT TTCGTTTGGGCAATTGTGCACAAGGACCGCATGCAGAAGCTTCGCGAGGAACGATACGACGTGACGCTAGCCACT ACAAAGGACAGCCCAAAATTGCCCAATTGGCTGACAGTCATGAGCGAGAACTCTGAGATTACCAATATGCTGCTA ACTCCGGAGCTGATTGCAGCCGTAACGGCAGCCGGGGATGCTTTCGAGCATCTCATTATCAGCGATCAACCCACA GACAAGCCAAAGACTGTGGATGACGTGGCGCCGCGCAAGCGTCTCTTCCTCAAGTACAAGCTCCCGTCGGACGAC GACTATGGTAAGCTGACGGCGCTGCTGGCGTACTTTTTGCGGCTCCCCGATGCACTGGTTCAAGAGGCACATTTC CGACCAGAGGTATTGAAGAAGATACGAGCTATTCGCGAGGCTATGATTACGCAGATCAAGAAGTCGCACGAGGAG GAGCGCAACGAGGAGAGGGCCGCTGAGAAGGAAAAGACGCGCAAGGCTAAACGTGACGCGGAGCTAAAGGGGCTT GATGCCAAGGCGCAAAAGAAGTATCTGGGAAAGGAAAAGGAAAAGGAGCTGCGACGAAATCAAAAGAAGATGACA ATGCGCGGCTAG |
| Transcript | >OphauB2|5190 ATGCGGCCGCTTGACAATATTGGTACGTACTCGCTGATCTCCAAAATTCACAACGGCTCCAAATCGTTGGACGTG CTGGAGCTCGGGGGCCTCTCCTTTTCGTCCTTTGACGGCGACCAAGAAGCAGCAATGGCCGATATCGTCAAGAAC TTGTTCGGAGGCTCCAAGCCGGAGCAACCAAAGGCCAAAAAAGATGCGGATTTTGCCGATTTTGCGGTAGCTCCT GAGCCCCAGCCTGAGTCGGTTCCTGGCACAGAGACGGCAGGTGATGGCGCCGCTGCTGCCGCTGCCGCTGCCACG CCCTTGCAGCCTTTCACCAAGTGGTATCGGGTTCATGACCGCCACTCTCTGTCTGAATTCAAGGCCGAGGGCGTG ATTATTGTCCTGGCGGCCTTTATATTCATCTTTCACGTTCTGGGCGCCCGCAAGAATCGGTCACGGGCGAGATCA TGGATCCGCGCCAACGCGCCTGTCCTCAAGAGCGAATTCGCGCTCGTTGGCTTTGGCGGTGTGCCAAACACGGAC AATGACAATGAGCTATCAGGACTGCTTAAGGAAAACTCACTCTTTGAGTTCGCTACATACGCCACAGGCCGACAG AACACAGCCTTTGTTGATGTAAAGATGACTTTGGCTAAGCGCTTCAACCCTGTATTGAATGCCACCGAGGCGGCT GCTTCCTTCTTCACCGACATGTTCTCACCGCCTCAGGACACGGTGGAGGCAATCATCTACCCCTTTGACGGCAAA GAAAGCCTCACGGTGCCCTCTGGTCCCGGGCTGGTCGAGGTGCGGGCCAAGGACGGCAAGAGCACCTATGAGGGT TTCGTTTGGGCAATTGTGCACAAGGACCGCATGCAGAAGCTTCGCGAGGAACGATACGACGTGACGCTAGCCACT ACAAAGGACAGCCCAAAATTGCCCAATTGGCTGACAGTCATGAGCGAGAACTCTGAGATTACCAATATGCTGCTA ACTCCGGAGCTGATTGCAGCCGTAACGGCAGCCGGGGATGCTTTCGAGCATCTCATTATCAGCGATCAACCCACA GACAAGCCAAAGACTGTGGATGACGTGGCGCCGCGCAAGCGTCTCTTCCTCAAGTACAAGCTCCCGTCGGACGAC GACTATGGTAAGCTGACGGCGCTGCTGGCGTACTTTTTGCGGCTCCCCGATGCACTGGTTCAAGAGGCACATTTC CGACCAGAGGTATTGAAGAAGATACGAGCTATTCGCGAGGCTATGATTACGCAGATCAAGAAGTCGCACGAGGAG GAGCGCAACGAGGAGAGGGCCGCTGAGAAGGAAAAGACGCGCAAGGCTAAACGTGACGCGGAGCTAAAGGGGCTT GATGCCAAGGCGCAAAAGAAGTATCTGGGAAAGGAAAAGGAAAAGGAGCTGCGACGAAATCAAAAGAAGATGACA ATGCGCGGCTAG |
| Gene | >OphauB2|5190 ATGCGGCCGCTTGACAATATTGGTACGTACTCGCTGATCTCCAAAATTCACAACGGCTCCAAATCGTTGGACGTG CTGGAGCTCGGGGGCCTCTCCTTTTCGTCCTTTGACGGCGACCAAGAAGCAGCAATGGCCGATATCGTCAAGAAC TTGTTCGGAGGCTCCAAGCCGGAGCAACCAAAGGCCAAAAAAGATGCGGGTAAGGATGGAGTCTTGCGTGCATCT CGCCTCGCGGCCTATGCTCTAGGCAGAGGGAGCATGTCGATGATTTGGATGACGCTGAGATGTTTGCCACTTGGT AGATTTTGCCGATTTTGCGGTAGCTCCTGAGCCCCAGCCTGAGTCGGTTCCTGGCACAGAGACGGCAGGTGATGG CGCCGCTGCTGCCGCTGCCGCTGCCACGCCCTTGCAGCCTTTCACCAAGTGGTATCGGGTTCATGACCGCCACTC TCTGTCTGAATTCAAGGCCGAGGGCGTGATTATTGTCCTGGCGGCCTTTATATTCATCTTTCACGTTCTGGGCGC CCGCAAGAATCGGTCACGGGCGAGATCATGGATCCGCGCCAACGCGCCTGTCCTCAAGAGCGAATTCGCGCTCGT TGGCTTTGGCGGTGTGCCAAACACGGACAATGACAATGAGCTATCAGGACTGCTTAAGGAAAACTCACTCTTTGA GTTCGCTACATACGCCACAGGCCGACAGAACACAGCCTTTGTTGATGTAAAGATGACTTTGGCTAAGCGCTTCAA CCCTGTATTGAATGCCACCGAGGCGGCTGCTTCCTTCTTCACCGACATGTTCTCACCGCCTCAGGACACGGTGGA GGCAATCATCTACCCCTTTGACGGCAAAGAAAGCCTCACGGTGCCCTCTGGTCCCGGGCTGGTCGAGGTGCGGGC CAAGGACGGCAAGAGCACCTATGAGGGTTTCGTTTGGGCAATTGTGCACAAGGACCGCATGCAGAAGCTTCGCGA GGAACGATACGACGTGACGCTAGCCACTACAAAGGACAGCCCAAAATTGCCCAATTGGCTGACAGTCATGAGCGA GAACTCTGAGATTACCAATATGCTGCTAACTCCGGAGCTGATTGCAGCCGTAACGGCAGCCGGGGATGCTTTCGA GCATCTCATTATCAGCGATCAACCCACAGACAAGCCAAAGACTGTGGATGACGTGGCGCCGCGCAAGCGTCTCTT CCTCAAGTACAAGCTCCCGTCGGACGACGACTATGGTAAGCTGACGGCGCTGCTGGCGTACTTTTTGCGGCTCCC CGATGCACTGGTTCAAGAGGCACATTTCCGACCAGAGGTATTGAAGAAGATACGAGCTATTCGCGAGGCTATGAT TACGCAGATCAAGAAGTCGCACGAGGAGGAGCGCAACGAGGAGAGGGCCGCTGAGAAGGAAAAGACGCGCAAGGC TAAACGTGACGCGGAGCTAAAGGGGCTTGATGCCAAGGCGCAAAAGAAGTATCTGGGAAAGGAAAAGGAAAAGGA GCTGCGACGAAATCAAAAGAAGATGACAATGCGCGGCTAG |