Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|5179
Gene name
LocationContig_39:85887..87375
Strand+
Gene length (bp)1488
Transcript length (bp)1350
Coding sequence length (bp)1350
Protein length (aa) 450

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02582 DUF155 RMND1/Sif2-Sif3/Mrx10, DUF155 2.4E-49 224 394

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O74446|SIF2_SCHPO Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif2 PE=1 SV=2 75 443 2.0E-130
sp|Q03441|RMD1_YEAST Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 50 448 2.0E-130
sp|Q09877|SIF3_SCHPO Sad1-interacting factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif3 PE=1 SV=2 78 409 1.0E-48
sp|P43620|RMD8_YEAST Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 223 442 7.0E-43
sp|Q9NWS8|RMND1_HUMAN Required for meiotic nuclear division protein 1 homolog OS=Homo sapiens GN=RMND1 PE=1 SV=2 119 434 6.0E-23
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O74446|SIF2_SCHPO Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif2 PE=1 SV=2 75 443 2.0E-130
sp|Q03441|RMD1_YEAST Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 50 448 2.0E-130
sp|Q09877|SIF3_SCHPO Sad1-interacting factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif3 PE=1 SV=2 78 409 1.0E-48
sp|P43620|RMD8_YEAST Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 223 442 7.0E-43
sp|Q9NWS8|RMND1_HUMAN Required for meiotic nuclear division protein 1 homolog OS=Homo sapiens GN=RMND1 PE=1 SV=2 119 434 6.0E-23
sp|Q8CI78|RMND1_MOUSE Required for meiotic nuclear division protein 1 homolog OS=Mus musculus GN=Rmnd1 PE=1 SV=1 115 434 8.0E-23
sp|Q5RAR5|RMND1_PONAB Required for meiotic nuclear division protein 1 homolog OS=Pongo abelii GN=RMND1 PE=2 SV=1 136 434 1.0E-21
sp|Q05648|MRX10_YEAST MIOREX complex component 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRX10 PE=1 SV=1 230 433 2.0E-18
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 14 0.45

Transmembrane Domains

Domain # Start End Length
1 423 445 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|5179
MDDELAPLLADARNDRPRPSRTVTFSADPVTRTIEPDSEGRSASLNSKLRRRNSHGGVAVAQQTPLPAGASGLAK
IGPQRSTKKTEKLKLLPNPDIDEEGGDEESGRDVYSQYTRIKDPTARRDAARLGKGDRSRLPRVTAYCTANRYHM
DGLMRFLKSRGKTRGANPKLIDECIYTPYASKETQPFADASNGASQAHPDDAEPPVAPHPVSPDFDTQVHTPEVF
LFDYGVVVVWGMSEGQEVKLLRDIAKFEVEKLAPDDVEVERFNFYYTQEYQARIYNDFITLRDKNNYMTKLAISH
ALAQSVKTSLFEELIASTIGACKDIPTQIALTGKIDLSRSQINMQIGELFILRINIHLNGSVLDTPELFWVEPQL
EPVYQAVRSYLEMDQRVGLITERLDVIADLLAVLKDQLSHGHDEKLEWIVIVLIAMEILVAAVNIVVDLYAGEA*
Coding >OphauB2|5179
ATGGACGACGAACTGGCGCCGCTGCTGGCGGATGCGCGCAACGATAGACCCAGGCCCTCGCGCACCGTCACCTTC
AGCGCAGACCCCGTGACGAGAACAATCGAGCCCGACAGCGAGGGCCGCAGCGCCTCGCTCAACAGCAAGCTGCGG
CGGCGCAACAGCCACGGCGGCGTCGCGGTTGCACAGCAGACGCCGCTGCCGGCCGGAGCTTCGGGGCTGGCCAAA
ATCGGCCCGCAGCGAAGCACCAAGAAGACGGAGAAGCTCAAGCTGCTGCCAAACCCCGACATTGATGAAGAGGGC
GGCGACGAAGAGAGCGGGCGAGACGTCTACTCGCAATACACGCGCATCAAGGACCCCACGGCCCGCCGCGATGCC
GCCCGCCTCGGCAAGGGAGACCGCTCCCGGCTGCCCCGCGTCACGGCCTACTGCACCGCCAACCGCTACCACATG
GACGGCCTGATGCGCTTTCTCAAGAGCCGTGGCAAGACGCGCGGCGCCAATCCCAAGCTCATTGACGAGTGTATA
TACACGCCCTATGCTTCCAAGGAGACGCAGCCCTTTGCCGACGCCTCCAATGGCGCTTCTCAAGCCCACCCAGAC
GACGCCGAGCCCCCCGTCGCCCCCCATCCCGTGTCGCCCGACTTTGACACCCAGGTCCACACCCCAGAAGTCTTT
CTCTTTGACTATGGCGTCGTTGTCGTCTGGGGCATGTCCGAGGGCCAAGAAGTCAAGCTGCTGCGCGACATTGCC
AAGTTTGAGGTGGAAAAGCTGGCCCCCGACGACGTCGAAGTCGAGCGCTTCAACTTTTACTACACCCAAGAGTAC
CAGGCACGCATCTACAACGACTTCATCACCCTGCGCGACAAGAACAACTACATGACCAAGCTCGCCATTTCCCAT
GCTCTGGCGCAAAGCGTAAAGACTTCGCTTTTCGAAGAGCTCATCGCCTCCACCATTGGTGCTTGCAAGGATATA
CCCACGCAGATTGCTCTCACGGGCAAGATTGACCTCAGCCGCTCGCAAATAAACATGCAGATTGGCGAGCTCTTC
ATCCTCCGCATCAACATACACCTCAACGGCTCCGTCCTCGACACACCCGAGCTCTTTTGGGTCGAGCCTCAGCTC
GAGCCCGTCTACCAGGCTGTCCGCAGCTACCTCGAAATGGATCAGCGCGTCGGCCTTATAACAGAACGCCTCGAC
GTCATTGCTGACTTGTTGGCTGTGCTCAAAGACCAGTTGAGCCATGGCCATGACGAGAAGCTTGAATGGATTGTC
ATTGTCCTCATTGCTATGGAGATTTTGGTTGCTGCTGTCAACATTGTCGTGGATCTCTACGCGGGGGAAGCGTAA
Transcript >OphauB2|5179
ATGGACGACGAACTGGCGCCGCTGCTGGCGGATGCGCGCAACGATAGACCCAGGCCCTCGCGCACCGTCACCTTC
AGCGCAGACCCCGTGACGAGAACAATCGAGCCCGACAGCGAGGGCCGCAGCGCCTCGCTCAACAGCAAGCTGCGG
CGGCGCAACAGCCACGGCGGCGTCGCGGTTGCACAGCAGACGCCGCTGCCGGCCGGAGCTTCGGGGCTGGCCAAA
ATCGGCCCGCAGCGAAGCACCAAGAAGACGGAGAAGCTCAAGCTGCTGCCAAACCCCGACATTGATGAAGAGGGC
GGCGACGAAGAGAGCGGGCGAGACGTCTACTCGCAATACACGCGCATCAAGGACCCCACGGCCCGCCGCGATGCC
GCCCGCCTCGGCAAGGGAGACCGCTCCCGGCTGCCCCGCGTCACGGCCTACTGCACCGCCAACCGCTACCACATG
GACGGCCTGATGCGCTTTCTCAAGAGCCGTGGCAAGACGCGCGGCGCCAATCCCAAGCTCATTGACGAGTGTATA
TACACGCCCTATGCTTCCAAGGAGACGCAGCCCTTTGCCGACGCCTCCAATGGCGCTTCTCAAGCCCACCCAGAC
GACGCCGAGCCCCCCGTCGCCCCCCATCCCGTGTCGCCCGACTTTGACACCCAGGTCCACACCCCAGAAGTCTTT
CTCTTTGACTATGGCGTCGTTGTCGTCTGGGGCATGTCCGAGGGCCAAGAAGTCAAGCTGCTGCGCGACATTGCC
AAGTTTGAGGTGGAAAAGCTGGCCCCCGACGACGTCGAAGTCGAGCGCTTCAACTTTTACTACACCCAAGAGTAC
CAGGCACGCATCTACAACGACTTCATCACCCTGCGCGACAAGAACAACTACATGACCAAGCTCGCCATTTCCCAT
GCTCTGGCGCAAAGCGTAAAGACTTCGCTTTTCGAAGAGCTCATCGCCTCCACCATTGGTGCTTGCAAGGATATA
CCCACGCAGATTGCTCTCACGGGCAAGATTGACCTCAGCCGCTCGCAAATAAACATGCAGATTGGCGAGCTCTTC
ATCCTCCGCATCAACATACACCTCAACGGCTCCGTCCTCGACACACCCGAGCTCTTTTGGGTCGAGCCTCAGCTC
GAGCCCGTCTACCAGGCTGTCCGCAGCTACCTCGAAATGGATCAGCGCGTCGGCCTTATAACAGAACGCCTCGAC
GTCATTGCTGACTTGTTGGCTGTGCTCAAAGACCAGTTGAGCCATGGCCATGACGAGAAGCTTGAATGGATTGTC
ATTGTCCTCATTGCTATGGAGATTTTGGTTGCTGCTGTCAACATTGTCGTGGATCTCTACGCGGGGGAAGCGTAA
Gene >OphauB2|5179
ATGGACGACGAACTGGCGCCGCTGCTGGCGGATGCGCGCAACGATAGACCCAGGCCCTCGCGCACCGTCACCTTC
AGCGCAGACCCCGTGACGAGAACAATCGAGCCCGACAGCGAGGGCCGCAGCGCCTCGCTCAACAGCAAGCTGCGG
CGGCGCAACAGCCACGGCGGCGTCGCGGTTGCACAGCAGACGCCGCTGCCGGCCGGAGCTTCGGGGCTGGCCAAA
ATCGGCCCGCAGCGAAGCACCAAGAAGACGGAGAAGCTCAAGCTGCTGCCAAACCCCGACATTGATGAAGAGGGC
GGCGACGAAGAGAGCGGGCGAGACGTCTACTCGCAATACACGCGCATCAAGGACCCCACGGCCCGCCGCGATGCC
GCCCGCCTCGGCAAGGGAGACCGCTCCCGGCTGCCCCGCGTCACGGCCTACTGCACCGCCAACCGCTACCACATG
GACGGCCTGATGCGCTTTCTCAAGAGCCGTGGCAAGACGCGCGGCGCCAATCCCAAGCTCATTGACGAGTGTATA
TACACGCCCTATGCTTCCAAGGAGACGCAGCCCTTTGCCGACGCCTCCAATGGCGCTTCTCAAGCCCACCCAGAC
GACGCCGAGCCCCCCGTCGCCCCCCATCCCGTGTCGCCCGACTTTGACACCCAGGTCCACACCCCAGAAGTCTTT
CTCTTTGACTATGGCGTCGTTGTCGTCTGGGGCATGTCCGAGGGCCAAGAAGTCAAGCTGCTGCGCGACATTGCC
AAGTTTGAGGTGGAAAAGCTGGCCCCCGACGACGTCGAAGTCGAGCGCTTCAACTTTTACTACACCCAAGAGTAC
CAGGCACGCATCTACAACGACTTCATCACCCTGCGCGACAAGAACAACTACATGACCAAGCTCGCCATTTCCCAT
GCTCTGGCGCAAAGCGTAAAGGTAAAGCTGATGCTGCCTCGTCGCGCCTCCATGGCTCCACTGCTGACACGCGCC
AAAAACACCAGACTTCGCTTTTCGAAGAGCTCATCGCCTCCACCATTGGTGCTTGCAAGGATATACCCACGCAGA
TTGCTCTCACGGGCAAGATTGACCTCAGCCGCTCGCAAATAAACATGCAGATTGGCGAGCTCTTCATCCTCCGCA
TCAACATACACCTCAACGGCTCCGTCCTCGACACACCCGAGCTCTTTTGGGTCGAGCCTCAGCTCGAGCCCGTCT
ACCAGGCTGTCCGCAGCTACCTCGAAATGGATCAGCGCGTCGGCCTTATAACAGAACGCCTCGACGTCATTGCTG
ACTTGTTGGCTGTGCTCAAAGACCAGTTGAGCCATGGCCATGACGAGAAGCTTGAATGGATTGGTGGGCTCCATC
CTCTCGATTTTCCCCTCCAGTCCGCAGAGTCTTGGTAGTGGCTGACTCTTCTGAATAACAGTCATTGTCCTCATT
GCTATGGAGATTTTGGTTGCTGCTGTCAACATTGTCGTGGATCTCTACGCGGGGGAAGCGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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