Protein ID | OphauB2|5131 |
Gene name | |
Location | Contig_38:113685..116842 |
Strand | - |
Gene length (bp) | 3157 |
Transcript length (bp) | 3048 |
Coding sequence length (bp) | 3048 |
Protein length (aa) | 1016 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF10214 | Rrn6 | RNA polymerase I-specific transcription-initiation factor | 5.8E-126 | 115 | 1012 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 11 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >OphauB2|5131 MANKHRPFAELDYGLPGLLKYLPSTDPVKGLGVLHTSRQTENCRAFNIFGSTAQIYPSSKTPRPWPQSNIWEQRR VQRRWLLKFHPETCMGSDVVGSMLKEEMEHFKDAQEENTRASLLAIGEMRDVRDAKNTKWLPMLAVATGQCGEKL RLTRIDESQWQWGDNEDALLHLSIIDSIHREEEVTWAADAAPITRIKTVTSYSQLNTPRWLLVQKLTWTTILQPE YNPIPLQNPDCAPNSTLKEPSFIRPNPILTLHSSQTGGNAHSDMCLIPAVPGSPPQLAVMDECGYWTVWNICGMW KIGNKTLRLVPFMCGNISQGVLDRMPLRSIYPAEKHGMLLFPRSKPVVPCQTRLEAECPGSTSGCSKRMVLWKAK RFELLDLSSNVSVGSLSVLSPANLDQDPILDIQISPLNSNHIFVLTTQKITWIDLAGLDMEPSPALPCPEVLLSL HHIGISNQDMRMSVSRVSADDTDTVLVFTFSPRNEQLYVQWFHQSPETGLTQWHRYVTDLPGSRQISSHGLIQGF RAQPAELEHSLESATIGPGTRYLQGDVQFYQVMVLADDLSLRYCICASDGLALNRTAAPYLEPPTVRIGWSTNQE RRLWRKKRKYHLRHMAEAFVLPDSMADADLEDFGRLRQTEEAQEAHSGDESAPPQPQARTLNMKKMCRDISDLLD SAAAAGERGLPSYLAQALSEVLEKGLERGSQPLATWADLAEELSHDTPGLSSDEDMEADLSHLLGLCDNRAVVMR LGRLPQPQCQGVWTELSELKRRYSAMWTDAVDNKLPAQMQLTRKAWVSEIAVDLFLSGHGAMVQDVDLFGVGSVA SDHDRHKSMVADSQPRTHSTQTLPLSSQASQPWTGTGTATSSSSSCESQDAALKCLELLVASIDAKKVTAAKPSK CLSLWPTKGETEKPDDYKSSIALKEDEVEQVWREKRRQHEARRAKRQRLHGRPEMMTAKGEEQVSSCVRIAASQM GEVQVPSSQVEGPVVTMSQPVSGVFGKRKRGKKRPGFGFG* |
Coding | >OphauB2|5131 ATGGCTAATAAACATCGCCCCTTTGCCGAGCTTGACTATGGTCTTCCTGGTCTATTGAAGTATTTGCCTTCTACG GACCCTGTAAAGGGTCTTGGTGTGCTTCATACTAGTAGGCAAACGGAGAACTGTCGTGCTTTCAATATCTTTGGA TCTACTGCTCAGATATATCCATCGTCAAAGACTCCCCGTCCTTGGCCGCAATCTAATATCTGGGAGCAACGGCGT GTCCAGCGACGATGGCTACTCAAGTTTCATCCCGAGACTTGCATGGGCAGCGACGTGGTCGGCTCGATGCTAAAA GAAGAAATGGAGCATTTTAAGGATGCCCAAGAGGAAAACACCAGGGCATCTTTACTCGCTATTGGCGAAATGAGA GATGTGAGGGATGCCAAAAACACCAAATGGTTGCCCATGCTTGCTGTCGCAACGGGCCAGTGCGGCGAAAAGCTA CGCTTGACGCGCATCGATGAGTCGCAATGGCAATGGGGCGACAACGAAGATGCCCTTCTACACCTCTCCATTATA GACTCGATTCATCGCGAGGAAGAGGTCACTTGGGCCGCTGACGCTGCGCCCATTACCCGTATCAAAACTGTAACG TCGTATTCGCAGCTCAACACACCCAGATGGCTTCTGGTCCAGAAATTGACGTGGACAACGATTTTGCAGCCGGAG TACAACCCAATCCCCTTGCAAAATCCGGATTGTGCTCCAAATTCGACCCTCAAAGAGCCATCTTTTATTCGCCCA AACCCAATCCTGACTTTACACTCGAGCCAGACAGGCGGAAATGCGCATTCTGACATGTGTCTCATTCCAGCTGTC CCGGGATCACCACCACAGCTTGCCGTCATGGACGAGTGTGGCTACTGGACTGTATGGAATATCTGTGGGATGTGG AAGATTGGCAACAAGACATTGCGACTGGTCCCATTCATGTGTGGTAATATTTCGCAAGGTGTTTTGGACCGGATG CCCTTGCGCTCAATCTATCCCGCTGAGAAGCATGGTATGCTCCTTTTCCCGCGCTCAAAACCCGTGGTGCCGTGT CAAACAAGGCTCGAGGCAGAGTGCCCTGGATCAACGTCTGGCTGCTCCAAGCGCATGGTGTTGTGGAAGGCCAAG AGATTTGAGCTTTTGGATTTGAGTTCAAACGTTTCGGTAGGATCATTGTCGGTGTTGTCACCTGCGAACCTCGAC CAAGACCCTATATTAGATATCCAAATCAGTCCGTTAAACAGCAATCACATTTTTGTACTCACGACGCAAAAGATC ACTTGGATAGACCTTGCTGGCTTGGATATGGAACCATCGCCAGCTTTACCTTGTCCCGAGGTTTTACTTTCACTG CATCATATAGGGATATCAAATCAAGACATGCGAATGTCTGTGTCGCGTGTCTCGGCAGACGACACTGACACTGTG CTTGTTTTTACATTTTCTCCGCGCAACGAGCAGCTTTATGTTCAGTGGTTTCATCAGTCTCCCGAAACTGGACTC ACCCAGTGGCACCGCTACGTAACGGACCTTCCGGGAAGCAGACAAATATCATCACACGGTCTAATCCAGGGTTTT CGAGCCCAACCCGCCGAGTTGGAGCACTCGCTGGAAAGTGCTACAATTGGTCCTGGCACCAGATATCTGCAGGGC GATGTCCAGTTCTATCAGGTCATGGTGCTTGCAGATGACTTGAGTCTGCGATATTGCATATGTGCTTCTGACGGT TTAGCTTTGAATCGCACGGCTGCCCCTTACTTGGAGCCGCCCACGGTGCGAATTGGCTGGTCTACCAATCAAGAG AGGCGACTTTGGAGGAAGAAGCGCAAGTATCATCTTCGCCACATGGCAGAGGCTTTTGTGCTACCGGACAGTATG GCCGACGCTGATTTGGAGGATTTTGGCCGACTGAGACAAACAGAGGAGGCGCAGGAGGCGCATTCTGGGGACGAA TCGGCGCCGCCTCAACCGCAGGCCCGGACACTCAACATGAAGAAGATGTGTAGGGATATTTCGGACCTGCTTGAC TCGGCAGCCGCAGCGGGGGAGCGTGGGCTTCCTAGCTACTTGGCCCAAGCCCTTAGCGAGGTTTTGGAGAAAGGG CTCGAGAGAGGATCACAACCCTTAGCGACATGGGCAGATTTGGCTGAAGAGCTGAGCCACGACACTCCGGGTCTA TCGTCTGACGAGGATATGGAAGCAGATTTGAGCCACCTGTTAGGGCTTTGTGACAATAGGGCGGTTGTGATGCGA CTTGGCAGGTTGCCTCAACCGCAGTGTCAAGGGGTGTGGACTGAGCTGTCGGAGCTCAAACGTCGGTACTCGGCA ATGTGGACTGATGCTGTCGACAACAAATTGCCCGCACAGATGCAACTCACGCGCAAGGCTTGGGTGTCTGAGATT GCTGTGGATCTATTTTTGTCTGGCCATGGGGCTATGGTGCAAGATGTTGACCTCTTTGGCGTGGGCTCAGTGGCG AGCGACCATGATAGGCACAAGTCAATGGTGGCGGACAGCCAACCGAGAACTCATAGCACGCAGACACTGCCATTG TCCTCACAAGCCTCTCAGCCATGGACAGGTACAGGTACAGCTACATCATCATCATCATCATGCGAGAGTCAAGAC GCGGCGCTCAAATGTCTGGAGCTCCTTGTGGCTTCTATTGACGCTAAAAAGGTGACTGCAGCCAAGCCAAGCAAG TGCTTGTCCCTCTGGCCAACGAAAGGGGAGACGGAGAAACCTGACGACTACAAATCGAGCATTGCCCTCAAGGAG GATGAGGTGGAGCAAGTATGGCGAGAGAAGAGGCGGCAACATGAGGCGCGCAGGGCCAAGCGGCAGAGATTGCAT GGGCGACCAGAGATGATGACTGCTAAGGGCGAGGAGCAGGTGTCGAGCTGCGTTAGAATAGCAGCGTCTCAGATG GGAGAAGTGCAAGTGCCCTCGTCGCAGGTTGAAGGACCGGTGGTGACGATGAGCCAGCCTGTGTCGGGCGTGTTT GGGAAGAGGAAAAGGGGCAAGAAGAGGCCTGGATTTGGATTTGGATGA |
Transcript | >OphauB2|5131 ATGGCTAATAAACATCGCCCCTTTGCCGAGCTTGACTATGGTCTTCCTGGTCTATTGAAGTATTTGCCTTCTACG GACCCTGTAAAGGGTCTTGGTGTGCTTCATACTAGTAGGCAAACGGAGAACTGTCGTGCTTTCAATATCTTTGGA TCTACTGCTCAGATATATCCATCGTCAAAGACTCCCCGTCCTTGGCCGCAATCTAATATCTGGGAGCAACGGCGT GTCCAGCGACGATGGCTACTCAAGTTTCATCCCGAGACTTGCATGGGCAGCGACGTGGTCGGCTCGATGCTAAAA GAAGAAATGGAGCATTTTAAGGATGCCCAAGAGGAAAACACCAGGGCATCTTTACTCGCTATTGGCGAAATGAGA GATGTGAGGGATGCCAAAAACACCAAATGGTTGCCCATGCTTGCTGTCGCAACGGGCCAGTGCGGCGAAAAGCTA CGCTTGACGCGCATCGATGAGTCGCAATGGCAATGGGGCGACAACGAAGATGCCCTTCTACACCTCTCCATTATA GACTCGATTCATCGCGAGGAAGAGGTCACTTGGGCCGCTGACGCTGCGCCCATTACCCGTATCAAAACTGTAACG TCGTATTCGCAGCTCAACACACCCAGATGGCTTCTGGTCCAGAAATTGACGTGGACAACGATTTTGCAGCCGGAG TACAACCCAATCCCCTTGCAAAATCCGGATTGTGCTCCAAATTCGACCCTCAAAGAGCCATCTTTTATTCGCCCA AACCCAATCCTGACTTTACACTCGAGCCAGACAGGCGGAAATGCGCATTCTGACATGTGTCTCATTCCAGCTGTC CCGGGATCACCACCACAGCTTGCCGTCATGGACGAGTGTGGCTACTGGACTGTATGGAATATCTGTGGGATGTGG AAGATTGGCAACAAGACATTGCGACTGGTCCCATTCATGTGTGGTAATATTTCGCAAGGTGTTTTGGACCGGATG CCCTTGCGCTCAATCTATCCCGCTGAGAAGCATGGTATGCTCCTTTTCCCGCGCTCAAAACCCGTGGTGCCGTGT CAAACAAGGCTCGAGGCAGAGTGCCCTGGATCAACGTCTGGCTGCTCCAAGCGCATGGTGTTGTGGAAGGCCAAG AGATTTGAGCTTTTGGATTTGAGTTCAAACGTTTCGGTAGGATCATTGTCGGTGTTGTCACCTGCGAACCTCGAC CAAGACCCTATATTAGATATCCAAATCAGTCCGTTAAACAGCAATCACATTTTTGTACTCACGACGCAAAAGATC ACTTGGATAGACCTTGCTGGCTTGGATATGGAACCATCGCCAGCTTTACCTTGTCCCGAGGTTTTACTTTCACTG CATCATATAGGGATATCAAATCAAGACATGCGAATGTCTGTGTCGCGTGTCTCGGCAGACGACACTGACACTGTG CTTGTTTTTACATTTTCTCCGCGCAACGAGCAGCTTTATGTTCAGTGGTTTCATCAGTCTCCCGAAACTGGACTC ACCCAGTGGCACCGCTACGTAACGGACCTTCCGGGAAGCAGACAAATATCATCACACGGTCTAATCCAGGGTTTT CGAGCCCAACCCGCCGAGTTGGAGCACTCGCTGGAAAGTGCTACAATTGGTCCTGGCACCAGATATCTGCAGGGC GATGTCCAGTTCTATCAGGTCATGGTGCTTGCAGATGACTTGAGTCTGCGATATTGCATATGTGCTTCTGACGGT TTAGCTTTGAATCGCACGGCTGCCCCTTACTTGGAGCCGCCCACGGTGCGAATTGGCTGGTCTACCAATCAAGAG AGGCGACTTTGGAGGAAGAAGCGCAAGTATCATCTTCGCCACATGGCAGAGGCTTTTGTGCTACCGGACAGTATG GCCGACGCTGATTTGGAGGATTTTGGCCGACTGAGACAAACAGAGGAGGCGCAGGAGGCGCATTCTGGGGACGAA TCGGCGCCGCCTCAACCGCAGGCCCGGACACTCAACATGAAGAAGATGTGTAGGGATATTTCGGACCTGCTTGAC TCGGCAGCCGCAGCGGGGGAGCGTGGGCTTCCTAGCTACTTGGCCCAAGCCCTTAGCGAGGTTTTGGAGAAAGGG CTCGAGAGAGGATCACAACCCTTAGCGACATGGGCAGATTTGGCTGAAGAGCTGAGCCACGACACTCCGGGTCTA TCGTCTGACGAGGATATGGAAGCAGATTTGAGCCACCTGTTAGGGCTTTGTGACAATAGGGCGGTTGTGATGCGA CTTGGCAGGTTGCCTCAACCGCAGTGTCAAGGGGTGTGGACTGAGCTGTCGGAGCTCAAACGTCGGTACTCGGCA ATGTGGACTGATGCTGTCGACAACAAATTGCCCGCACAGATGCAACTCACGCGCAAGGCTTGGGTGTCTGAGATT GCTGTGGATCTATTTTTGTCTGGCCATGGGGCTATGGTGCAAGATGTTGACCTCTTTGGCGTGGGCTCAGTGGCG AGCGACCATGATAGGCACAAGTCAATGGTGGCGGACAGCCAACCGAGAACTCATAGCACGCAGACACTGCCATTG TCCTCACAAGCCTCTCAGCCATGGACAGGTACAGGTACAGCTACATCATCATCATCATCATGCGAGAGTCAAGAC GCGGCGCTCAAATGTCTGGAGCTCCTTGTGGCTTCTATTGACGCTAAAAAGGTGACTGCAGCCAAGCCAAGCAAG TGCTTGTCCCTCTGGCCAACGAAAGGGGAGACGGAGAAACCTGACGACTACAAATCGAGCATTGCCCTCAAGGAG GATGAGGTGGAGCAAGTATGGCGAGAGAAGAGGCGGCAACATGAGGCGCGCAGGGCCAAGCGGCAGAGATTGCAT GGGCGACCAGAGATGATGACTGCTAAGGGCGAGGAGCAGGTGTCGAGCTGCGTTAGAATAGCAGCGTCTCAGATG GGAGAAGTGCAAGTGCCCTCGTCGCAGGTTGAAGGACCGGTGGTGACGATGAGCCAGCCTGTGTCGGGCGTGTTT GGGAAGAGGAAAAGGGGCAAGAAGAGGCCTGGATTTGGATTTGGATGA |
Gene | >OphauB2|5131 ATGGCTAATAAACATCGCCCCTTTGCCGAGCTTGACTATGGTCTTCCTGGTCTATTGAAGTATTTGCCTTCTACG GACCCTGTAAAGGGTCTTGGTGTGCTTCATACTAGTAGGCAAACGGAGAACTGTGAGTGCAAATAGTTGATCTGC TGGAACCCCGCGCAACTCTGACAATATCCATCAGGTCGTGCTTTCAATATCTTTGGATCTACTGCTCAGATATAT CCATCGTCAAAGACTCCCCGTCCTTGGCCGCAATCTAATATCTGGGAGCAACGGCGTGTCCAGCGACGATGGCTA CTCAAGTTTCATCCCGAGACTTGCATGGGCAGCGACGTGGTCGGCTCGATGCTAAAAGAAGAAATGGAGCATTTT AAGGATGCCCAAGAGGAAAACACCAGGGCATCTTTACTCGCTATTGGCGAAATGAGAGATGTGAGGGATGCCAAA AACACCAAATGGTTGCCCATGCTTGCTGTCGCAACGGGCCAGTGCGGCGAAAAGCTACGCTTGACGCGCATCGAT GAGTCGCAATGGCAATGGGGCGACAACGAAGATGCCCTTCTACACCTCTCCATTATAGACTCGATTCATCGCGAG GAAGAGGTCACTTGGGCCGCTGACGCTGCGCCCATTACCCGTATCAAAACTGTAACGTCGTATTCGCAGCTCAAC ACACCCAGATGGCTTCTGGTCCAGAAATTGACGTGGACAACGATTTTGCAGCCGGAGTACAACCCAATCCCCTTG CAAAATCCGGATTGTGCTCCAAATTCGACCCTCAAAGAGCCATCTTTTATTCGCCCAAACCCAATCCTGACTTTA CACTCGAGCCAGACAGGCGGAAATGCGCATTCTGACATGTGTCTCATTCCAGCTGTCCCGGGATCACCACCACAG CTTGCCGTCATGGACGAGTGTGGCTACTGGACTGTATGGAATATCTGTGGGATGTGGAAGATTGGCAACAAGACA TTGCGACTGGTCCCATTCATGTGTGGTAATATTTCGCAAGGTGTTTTGGACCGGATGCCCTTGCGCTCAATCTAT CCCGCTGAGAAGCATGGTATGCTCCTTTTCCCGCGCTCAAAACCCGTGGTGCCGTGTCAAACAAGGCTCGAGGCA GAGTGCCCTGGATCAACGTCTGGCTGCTCCAAGCGCATGGTGTTGTGGAAGGCCAAGAGATTTGAGCTTTTGGAT TTGAGTTCAAACGTTTCGGTAGGATCATTGTCGGTGTTGTCACCTGCGAACCTCGACCAAGACCCTATATTAGAT ATCCAAATCAGTCCGTTAAACAGCAATCACATTTTTGTACTCACGACGCAAAAGATCACTTGGATAGACCTTGCT GGCTTGGATATGGAACCATCGCCAGCTTTACCTTGTCCCGAGGTTTTACTTTCACTGCATCATATAGGGATATCA AATCAAGACATGCGAATGTCTGTGTCGCGTGTCTCGGCAGACGACACTGACACTGTGCTTGTTTTTACATTTTCT CCGCGCAACGAGCAGCTTTATGTTCAGTGGTTTCATCAGTCTCCCGAAACTGGACTCACCCAGTGGCACCGCTAC GTAACGGACCTTCCGGGAAGCAGACAAATATCATCACACGGTCTAATCCAGGGTTTTCGAGCCCAACCCGCCGAG TTGGAGCACTCGCTGGAAAGTGCTACAATTGGTCCTGGCACCAGATATCTGCAGGGCGATGTCCAGTTCTATCAG GTCATGGTGCTTGCAGATGACTTGAGTCTGCGATATTGCATATGTGCTTCTGACGGTTTAGCTTTGAATCGCACG GCTGCCCCTTACTTGGAGCCGCCCACGGTGCGAATTGGCTGGTCTACCAATCAAGAGAGGCGACTTTGGAGGAAG AAGCGCAAGTATCATCTTCGCCACATGGCAGAGGCTTTTGTGCTACCGGACAGTATGGCCGACGCTGATTTGGAG GATTTTGGCCGACTGAGACAAACAGAGGAGGCGCAGGAGGCGCATTCTGGGGACGAATCGGCGCCGCCTCAACCG CAGGCCCGGACACTCAACATGAAGAAGATGTGTAGGGATATTTCGGACCTGCTTGACTCGGCAGCCGCAGCGGGG GAGCGTGGGCTTCCTAGCTACTTGGCCCAAGCCCTTAGCGAGGTTTTGGAGAAAGGGCTCGAGAGAGGATCACAA CCCTTAGCGACATGGTTTGTAGGCTCGGCCTTGACGAGTGTTATTGTGGTACTAATTTGAACCTAGGGCAGATTT GGCTGAAGAGCTGAGCCACGACACTCCGGGTCTATCGTCTGACGAGGATATGGAAGCAGATTTGAGCCACCTGTT AGGGCTTTGTGACAATAGGGCGGTTGTGATGCGACTTGGCAGGTTGCCTCAACCGCAGTGTCAAGGGGTGTGGAC TGAGCTGTCGGAGCTCAAACGTCGGTACTCGGCAATGTGGACTGATGCTGTCGACAACAAATTGCCCGCACAGAT GCAACTCACGCGCAAGGCTTGGGTGTCTGAGATTGCTGTGGATCTATTTTTGTCTGGCCATGGGGCTATGGTGCA AGATGTTGACCTCTTTGGCGTGGGCTCAGTGGCGAGCGACCATGATAGGCACAAGTCAATGGTGGCGGACAGCCA ACCGAGAACTCATAGCACGCAGACACTGCCATTGTCCTCACAAGCCTCTCAGCCATGGACAGGTACAGGTACAGC TACATCATCATCATCATCATGCGAGAGTCAAGACGCGGCGCTCAAATGTCTGGAGCTCCTTGTGGCTTCTATTGA CGCTAAAAAGGTGACTGCAGCCAAGCCAAGCAAGTGCTTGTCCCTCTGGCCAACGAAAGGGGAGACGGAGAAACC TGACGACTACAAATCGAGCATTGCCCTCAAGGAGGATGAGGTGGAGCAAGTATGGCGAGAGAAGAGGCGGCAACA TGAGGCGCGCAGGGCCAAGCGGCAGAGATTGCATGGGCGACCAGAGATGATGACTGCTAAGGGCGAGGAGCAGGT GTCGAGCTGCGTTAGAATAGCAGCGTCTCAGATGGGAGAAGTGCAAGTGCCCTCGTCGCAGGTTGAAGGACCGGT GGTGACGATGAGCCAGCCTGTGTCGGGCGTGTTTGGGAAGAGGAAAAGGGGCAAGAAGAGGCCTGGATTTGGATT TGGATGA |