Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|513
Gene name
LocationContig_109:24549..25308
Strand-
Gene length (bp)759
Transcript length (bp)576
Coding sequence length (bp)576
Protein length (aa) 192

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03073 TspO_MBR TspO/MBR family 4.4E-46 24 175

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O94327|TSPO_SCHPO Translocator protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC725.10 PE=3 SV=2 14 177 4.0E-25
sp|P30536|TSPOA_HUMAN Translocator protein OS=Homo sapiens GN=TSPO PE=1 SV=3 20 169 2.0E-17
sp|Q8KBX2|TSPO_CHLTE Tryptophan-rich protein TspO OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) GN=crtK-2 PE=1 SV=1 26 169 1.0E-16
sp|P16257|TSPO_RAT Translocator protein OS=Rattus norvegicus GN=Tspo PE=1 SV=1 20 169 4.0E-16
sp|P50637|TSPO_MOUSE Translocator protein OS=Mus musculus GN=Tspo PE=1 SV=1 20 169 2.0E-15
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Swissprot ID Swissprot Description Start End E-value
sp|O94327|TSPO_SCHPO Translocator protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC725.10 PE=3 SV=2 14 177 4.0E-25
sp|P30536|TSPOA_HUMAN Translocator protein OS=Homo sapiens GN=TSPO PE=1 SV=3 20 169 2.0E-17
sp|Q8KBX2|TSPO_CHLTE Tryptophan-rich protein TspO OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) GN=crtK-2 PE=1 SV=1 26 169 1.0E-16
sp|P16257|TSPO_RAT Translocator protein OS=Rattus norvegicus GN=Tspo PE=1 SV=1 20 169 4.0E-16
sp|P50637|TSPO_MOUSE Translocator protein OS=Mus musculus GN=Tspo PE=1 SV=1 20 169 2.0E-15
sp|P30535|TSPO_BOVIN Translocator protein OS=Bos taurus GN=TSPO PE=2 SV=1 20 190 4.0E-15
sp|Q9GMC9|TSPO_SHEEP Translocator protein OS=Ovis aries GN=TSPO PE=1 SV=1 20 190 2.0E-14
sp|O28797|TSPO_ARCFU Tryptophan-rich protein TspO OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=tspO PE=3 SV=1 22 177 8.0E-14
sp|Q6UN27|TSPO_PIG Translocator protein OS=Sus scrofa GN=TSPO PE=2 SV=1 20 169 5.0E-13
sp|Q9RFC8|TSPO_RHOSH Tryptophan-rich sensory protein OS=Rhodobacter sphaeroides GN=tspO PE=1 SV=1 23 185 3.0E-11
sp|P17057|CRTK_RHOCB Protein CrtK OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtK PE=3 SV=1 47 177 4.0E-08
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GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 34 0.45

Transmembrane Domains

Domain # Start End Length
1 15 37 22
2 102 121 19
3 131 148 17
4 157 179 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|513
MTTYTYMPSITIPTAVLQHPAASILLPIGLGTAVGYSSRPSETQKTYLALKQPPLRPPPWVFGPVWTLLYGLMGY
AAHRVASIGLSPFASPDTTRLTKQSMTLYTLQLGLNLAWMPLFFVAKRPVEATVDIVTLLGLNGYLAYVWSSIDQ
VAGMCQVPYLAWLSFATYLCAGTGYLNNWDLSETEPSDKRH*
Coding >OphauB2|513
ATGACCACGTACACGTACATGCCCAGCATCACCATTCCCACTGCCGTGCTCCAGCACCCAGCTGCATCCATCCTC
CTCCCCATAGGCCTGGGCACCGCAGTCGGCTACAGCTCACGGCCTTCCGAAACGCAAAAGACATATCTCGCCCTC
AAGCAGCCGCCCCTGCGCCCTCCTCCCTGGGTCTTTGGCCCGGTCTGGACACTGCTCTATGGCCTCATGGGATAT
GCTGCCCATCGCGTCGCCTCCATTGGCCTCTCTCCCTTTGCCTCTCCAGACACGACCCGACTCACAAAGCAGAGC
ATGACCCTTTACACCCTTCAGCTGGGCCTCAACCTTGCTTGGATGCCCTTGTTCTTCGTCGCCAAGCGTCCCGTA
GAGGCCACGGTTGACATTGTCACTCTGCTCGGTCTCAACGGCTATCTTGCCTACGTCTGGAGTTCCATTGATCAA
GTCGCTGGAATGTGCCAAGTGCCCTATCTCGCCTGGCTCAGCTTCGCAACCTATCTTTGCGCTGGTACCGGTTAT
CTCAACAACTGGGATCTATCAGAGACAGAGCCGTCGGATAAGCGCCATTAG
Transcript >OphauB2|513
ATGACCACGTACACGTACATGCCCAGCATCACCATTCCCACTGCCGTGCTCCAGCACCCAGCTGCATCCATCCTC
CTCCCCATAGGCCTGGGCACCGCAGTCGGCTACAGCTCACGGCCTTCCGAAACGCAAAAGACATATCTCGCCCTC
AAGCAGCCGCCCCTGCGCCCTCCTCCCTGGGTCTTTGGCCCGGTCTGGACACTGCTCTATGGCCTCATGGGATAT
GCTGCCCATCGCGTCGCCTCCATTGGCCTCTCTCCCTTTGCCTCTCCAGACACGACCCGACTCACAAAGCAGAGC
ATGACCCTTTACACCCTTCAGCTGGGCCTCAACCTTGCTTGGATGCCCTTGTTCTTCGTCGCCAAGCGTCCCGTA
GAGGCCACGGTTGACATTGTCACTCTGCTCGGTCTCAACGGCTATCTTGCCTACGTCTGGAGTTCCATTGATCAA
GTCGCTGGAATGTGCCAAGTGCCCTATCTCGCCTGGCTCAGCTTCGCAACCTATCTTTGCGCTGGTACCGGTTAT
CTCAACAACTGGGATCTATCAGAGACAGAGCCGTCGGATAAGCGCCATTAG
Gene >OphauB2|513
ATGACCACGTACACGTACATGCCCAGCATCACCATTCCCACTGCCGTGCTCCAGCACCCAGCTGCATCCATCCTC
CTCCCCATAGGCCTGGGCACCGCAGTCGGCTACAGCTCACGGCGTTAGTTTTTCCTCACACGCATATTTAAATAT
ATATATTTAAATATGTACTATATTATATACCACTTGCGCTTTGCACTTCTGACTCGTCACCTCCTCTAGCTTCCG
AAACGCAAAAGACATATCTCGCCCTCAAGCAGCCGCCCCTGCGCCCTCCTCCCTGGGTCTTTGGCCCGGTCTGGA
CACTGCTCTATGGGTGCGCAAGCCTCGTCTCCCTCTCTCTCCCAGCTGTTTTGACCCGATGGGCCGTGCACCTCC
ACTAATGCAAGCAAATGCAGCCTCATGGGATATGCTGCCCATCGCGTCGCCTCCATTGGCCTCTCTCCCTTTGCC
TCTCCAGACACGACCCGACTCACAAAGCAGAGCATGACCCTTTACACCCTTCAGCTGGGCCTCAACCTTGCTTGG
ATGCCCTTGTTCTTCGTCGCCAAGCGTCCCGTAGAGGCCACGGTTGACATTGTCACTCTGCTCGGTCTCAACGGC
TATCTTGCCTACGTCTGGAGTTCCATTGATCAAGTCGCTGGAATGTGCCAAGTGCCCTATCTCGCCTGGCTCAGC
TTCGCAACCTATCTTTGCGCTGGTACCGGTTATCTCAACAACTGGGATCTATCAGAGACAGAGCCGTCGGATAAG
CGCCATTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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