Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|5083
Gene name
LocationContig_371:290..1227
Strand+
Gene length (bp)937
Transcript length (bp)807
Coding sequence length (bp)807
Protein length (aa) 269

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04117 Mpv17_PMP22 Mpv17 / PMP22 family 1.8E-10 170 226

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q54GD8|PX24C_DICDI PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1 61 234 3.0E-10
sp|Q2KIY1|PXMP2_BOVIN Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3 58 231 5.0E-10
sp|Q9ZS51|PMP22_ARATH Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1 55 241 9.0E-10
sp|Q54FR4|PX24D_DICDI PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1 61 230 2.0E-08
sp|Q4IPX8|SYM1_GIBZE Protein SYM1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SYM1 PE=3 SV=1 57 232 6.0E-08
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Swissprot ID Swissprot Description Start End E-value
sp|Q54GD8|PX24C_DICDI PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1 61 234 3.0E-10
sp|Q2KIY1|PXMP2_BOVIN Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3 58 231 5.0E-10
sp|Q9ZS51|PMP22_ARATH Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1 55 241 9.0E-10
sp|Q54FR4|PX24D_DICDI PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1 61 230 2.0E-08
sp|Q4IPX8|SYM1_GIBZE Protein SYM1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SYM1 PE=3 SV=1 57 232 6.0E-08
sp|Q7SCY7|SYM1_NEUCR Protein sym-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sym-1 PE=3 SV=2 58 227 7.0E-07
sp|Q54XX9|PX24B_DICDI PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1 61 233 2.0E-06
sp|Q07066|PXMP2_RAT Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2 58 231 4.0E-06
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GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 34 0.45

Transmembrane Domains

Domain # Start End Length
1 110 132 22
2 145 167 22
3 210 229 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|5083
MSVKFERDTLKQTAHHAVSDMVATSKPIAGTSGKHVVAERIGTALTGGLQNAGSKGYLAAYIKQLESNPLRTKML
TAGSLAGTQELMASWLAKDRNKHGHYLTSRVPKMAAYGALVSAPLGHLLIWILQKAFRGRTSLSAKVMQILVSNL
IIAPIQNSIYLVAMALIAGARTHHQVRATVKVGFWRVMRVSWVTSPICLAFAQKFLPDELWVPFFNIVSFVIGTY
INTVTKKKRLAALRRKHFGEGRSSGIGRPDDYSASHMGSNPPY*
Coding >OphauB2|5083
ATGTCGGTCAAGTTTGAACGCGACACGTTGAAGCAAACGGCGCACCATGCAGTCTCGGACATGGTGGCCACGAGC
AAACCCATTGCTGGCACCAGCGGCAAGCATGTTGTTGCTGAAAGAATCGGCACTGCCCTCACGGGTGGCCTTCAG
AATGCCGGCTCCAAGGGTTATCTAGCTGCCTACATCAAGCAGCTCGAGTCGAATCCCCTGCGCACAAAGATGCTC
ACTGCTGGCTCTCTTGCCGGCACCCAGGAGCTCATGGCATCGTGGCTGGCCAAGGACCGCAACAAACATGGCCAC
TACTTGACGTCGCGCGTCCCCAAAATGGCGGCATACGGCGCCCTCGTGAGCGCGCCTCTGGGCCACCTTCTCATT
TGGATCTTGCAAAAGGCCTTTCGTGGTCGTACAAGCCTGAGTGCCAAGGTGATGCAGATTTTGGTCAGCAACCTC
ATTATTGCACCCATCCAAAACAGCATCTACTTGGTTGCCATGGCCCTCATTGCCGGTGCCCGCACCCATCACCAG
GTGCGCGCCACGGTCAAGGTCGGCTTCTGGAGAGTCATGCGCGTCTCTTGGGTCACTTCGCCCATTTGCCTGGCT
TTTGCCCAAAAGTTCCTGCCCGATGAGCTCTGGGTTCCTTTTTTCAACATTGTATCCTTCGTCATTGGCACTTAT
ATCAATACAGTCACCAAGAAAAAACGTCTGGCTGCATTGCGAAGGAAGCATTTTGGAGAAGGTCGCTCGAGTGGC
ATAGGTCGACCTGACGACTATTCTGCGAGCCATATGGGATCGAATCCTCCTTACTGA
Transcript >OphauB2|5083
ATGTCGGTCAAGTTTGAACGCGACACGTTGAAGCAAACGGCGCACCATGCAGTCTCGGACATGGTGGCCACGAGC
AAACCCATTGCTGGCACCAGCGGCAAGCATGTTGTTGCTGAAAGAATCGGCACTGCCCTCACGGGTGGCCTTCAG
AATGCCGGCTCCAAGGGTTATCTAGCTGCCTACATCAAGCAGCTCGAGTCGAATCCCCTGCGCACAAAGATGCTC
ACTGCTGGCTCTCTTGCCGGCACCCAGGAGCTCATGGCATCGTGGCTGGCCAAGGACCGCAACAAACATGGCCAC
TACTTGACGTCGCGCGTCCCCAAAATGGCGGCATACGGCGCCCTCGTGAGCGCGCCTCTGGGCCACCTTCTCATT
TGGATCTTGCAAAAGGCCTTTCGTGGTCGTACAAGCCTGAGTGCCAAGGTGATGCAGATTTTGGTCAGCAACCTC
ATTATTGCACCCATCCAAAACAGCATCTACTTGGTTGCCATGGCCCTCATTGCCGGTGCCCGCACCCATCACCAG
GTGCGCGCCACGGTCAAGGTCGGCTTCTGGAGAGTCATGCGCGTCTCTTGGGTCACTTCGCCCATTTGCCTGGCT
TTTGCCCAAAAGTTCCTGCCCGATGAGCTCTGGGTTCCTTTTTTCAACATTGTATCCTTCGTCATTGGCACTTAT
ATCAATACAGTCACCAAGAAAAAACGTCTGGCTGCATTGCGAAGGAAGCATTTTGGAGAAGGTCGCTCGAGTGGC
ATAGGTCGACCTGACGACTATTCTGCGAGCCATATGGGATCGAATCCTCCTTACTGA
Gene >OphauB2|5083
ATGTCGGTCAAGTTTGAACGCGACACGTTGAAGCAAACGGCGCACCATGCAGTCTCGGACATGGTGGCCACGAGC
AAACCCATTGCTGGCACCAGCGGCAAGCATGTTGTTGCTGAAAGAATCGGCACTGCCCTCACGGGTGGCCTTCAG
AATGCCGGCTCCAAGGGTTATCTAGCTGTGCGTTTGGCGTTCCCCTGGGTGCACTCTGGCGTCTGACTGTTTGCG
CCCCCTTGACTCTCTTCAGGCCTACATCAAGCAGCTCGAGTCGAATCCCCTGCGCACAAAGATGCTCACTGCTGG
CTCTCTTGCCGGCACCCAGGAGCTCATGGCATCGTGGCTGGCCAAGGACCGCAACAAACATGGCCACTACTTGAC
GTCGCGCGTCCCCAAAATGGCGGCATACGGCGCCCTCGTGAGCGCGCCTCTGGGCCACCTTCTCATTTGGATCTT
GCAAAAGGCCTTTCGTGGTCGTACAAGCCTGAGTGCCAAGGTGATGCAGATTTTGGTCAGCAACCTCATTGTACG
TGACTGCTTAGGGGCCAGATGTTTTGCCCACTAGCATTGTTGACTTGCCATGACACAGATTGCACCCATCCAAAA
CAGCATCTACTTGGTTGCCATGGCCCTCATTGCCGGTGCCCGCACCCATCACCAGGTGCGCGCCACGGTCAAGGT
CGGCTTCTGGAGAGTCATGCGCGTCTCTTGGGTCACTTCGCCCATTTGCCTGGCTTTTGCCCAAAAGTTCCTGCC
CGATGAGCTCTGGGTTCCTTTTTTCAACATTGTATCCTTCGTCATTGGCACTTATATCAATACAGTCACCAAGAA
AAAACGTCTGGCTGCATTGCGAAGGAAGCATTTTGGAGAAGGTCGCTCGAGTGGCATAGGTCGACCTGACGACTA
TTCTGCGAGCCATATGGGATCGAATCCTCCTTACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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