© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|5055 |
| Gene name | |
| Location | Contig_37:54319..56348 |
| Strand | + |
| Gene length (bp) | 2029 |
| Transcript length (bp) | 1932 |
| Coding sequence length (bp) | 1932 |
| Protein length (aa) | 644 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08238 | Sel1 | Sel1 repeat | 1.6E-04 | 337 | 372 |
| PF08238 | Sel1 | Sel1 repeat | 4.3E-07 | 373 | 412 |
| PF08238 | Sel1 | Sel1 repeat | 2.0E-08 | 414 | 448 |
| PF08238 | Sel1 | Sel1 repeat | 3.7E-01 | 453 | 491 |
| PF08238 | Sel1 | Sel1 repeat | 2.3E-07 | 494 | 526 |
| PF08238 | Sel1 | Sel1 repeat | 2.5E+00 | 534 | 562 |
| PF08238 | Sel1 | Sel1 repeat | 1.1E-02 | 567 | 601 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09897|CHR3_SCHPO | Chitin synthase regulatory factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chr3 PE=1 SV=1 | 269 | 643 | 8.0E-72 |
| sp|P34226|SKT5_YEAST | Protein SKT5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKT5 PE=1 SV=1 | 296 | 609 | 7.0E-53 |
| sp|Q07622|ACK1_YEAST | Activator of C kinase protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ACK1 PE=1 SV=1 | 320 | 612 | 4.0E-42 |
| sp|O94614|CHR4_SCHPO | Chitin synthase regulatory factor 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chr4 PE=1 SV=4 | 197 | 635 | 9.0E-35 |
| sp|O94486|CHR2_SCHPO | Chitin synthase regulatory factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chr2 PE=3 SV=1 | 337 | 643 | 1.0E-28 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09897|CHR3_SCHPO | Chitin synthase regulatory factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chr3 PE=1 SV=1 | 269 | 643 | 8.0E-72 |
| sp|P34226|SKT5_YEAST | Protein SKT5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKT5 PE=1 SV=1 | 296 | 609 | 7.0E-53 |
| sp|Q07622|ACK1_YEAST | Activator of C kinase protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ACK1 PE=1 SV=1 | 320 | 612 | 4.0E-42 |
| sp|O94614|CHR4_SCHPO | Chitin synthase regulatory factor 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chr4 PE=1 SV=4 | 197 | 635 | 9.0E-35 |
| sp|O94486|CHR2_SCHPO | Chitin synthase regulatory factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chr2 PE=3 SV=1 | 337 | 643 | 1.0E-28 |
| sp|P39000|SHC1_YEAST | Protein SHC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHC1 PE=2 SV=1 | 313 | 491 | 2.0E-20 |
| sp|A6ZR53|SHC1_YEAS7 | Protein SHC1 OS=Saccharomyces cerevisiae (strain YJM789) GN=SHC1 PE=3 SV=1 | 313 | 491 | 2.0E-20 |
| sp|P77234|YBEQ_ECOLI | Uncharacterized protein YbeQ OS=Escherichia coli (strain K12) GN=ybeQ PE=4 SV=2 | 355 | 621 | 3.0E-13 |
| sp|A0A0H2VDN9|ESIB_ECOL6 | Secretory immunoglobulin A-binding protein EsiB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=esiB PE=1 SV=1 | 383 | 641 | 1.0E-11 |
| sp|A0A0H2VDN9|ESIB_ECOL6 | Secretory immunoglobulin A-binding protein EsiB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=esiB PE=1 SV=1 | 351 | 634 | 3.0E-11 |
| sp|P77296|YBET_ECOLI | Uncharacterized protein YbeT OS=Escherichia coli (strain K12) GN=ybeT PE=2 SV=1 | 490 | 612 | 3.0E-10 |
| sp|P60924|DELE_RAT | Death ligand signal enhancer OS=Rattus norvegicus GN=Dele PE=2 SV=1 | 339 | 524 | 5.0E-10 |
| sp|O59732|CHR1_SCHPO | Chitin synthase regulatory factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chr1 PE=1 SV=1 | 433 | 603 | 1.0E-09 |
| sp|Q9DCV6|DELE_MOUSE | Death ligand signal enhancer OS=Mus musculus GN=Kiaa0141 PE=2 SV=1 | 339 | 524 | 2.0E-09 |
| sp|Q9ZG88|PODJ_CAUCR | Localization factor PodJL OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=podJ PE=1 SV=2 | 431 | 613 | 6.0E-09 |
| sp|B8GXA0|PODJ_CAUCN | Localization factor PodJL OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=podJ PE=2 SV=1 | 431 | 613 | 6.0E-09 |
| sp|Q14154|DELE_HUMAN | Death ligand signal enhancer OS=Homo sapiens GN=KIAA0141 PE=1 SV=3 | 322 | 506 | 8.0E-09 |
| sp|Q10NT7|HRD3_ORYSJ | ERAD-associated E3 ubiquitin-protein ligase component HRD3 OS=Oryza sativa subsp. japonica GN=HRD3 PE=2 SV=1 | 317 | 601 | 5.0E-07 |
| sp|O25021|HCPE_HELPY | Putative beta-lactamase HcpE OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=hcpE PE=3 SV=1 | 385 | 546 | 6.0E-07 |
| sp|Q5UP92|YL018_MIMIV | Putative sel1-like repeat-containing protein L18 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L18 PE=4 SV=1 | 405 | 590 | 9.0E-07 |
| sp|Q68CR1|SE1L3_HUMAN | Protein sel-1 homolog 3 OS=Homo sapiens GN=SEL1L3 PE=1 SV=2 | 356 | 562 | 6.0E-06 |
| sp|Q80TS8|SE1L3_MOUSE | Protein sel-1 homolog 3 OS=Mus musculus GN=Sel1l3 PE=2 SV=3 | 356 | 562 | 7.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|5055 MDARQDMTSLQREVAAPYAGPAGRAIPPRPSTASGTRQQPRRMQTMDPEGPSAYGSHGSEPMPSSDDVFNSYFDN APGPGTSGQAFPPHQGAHQMPRLHHAKSEATFREPQAAVFEMAGDIPSVPPMPHTKLYQPQFAEGYGGAGYQAVK PPPRGPSAPPGAANGHQRDDYTGSDGLSRTKTSLSQNSSTNADALPSHPTPVRPGLVSNSGPKLNDRPPPVRNYG GVPQSGPMRTQVMAPQQQQFQRPFARMGHDVSEGGAPSDPVTTQELEALRMAIKANPADQESALRLARRLIEASD VLVSKAPDVKHRNKMRDRYLMDAHKILKKLANAQNQDAMFAMADGLGKGLFGHEPDNKEAFTLYQSAAKMGHAAA AYRTAVCCEIGHEEGGGTRKDPLKAMQWYKRAATLGDPPAMYKVGMILLKGLLGQPKNPREAVGWLKRAAERADT ENPHALHELGLLYESAQPNDAMIRDERYALTLFLQAADLGYKFSQFRLGCAFEYGLMGCPIDPRQSIYWYSKAAT QEEHQSELALSGWYLTGSEGVLGQSDTEAYLWARKAAVAGLAKAEYAMGYFTEVGIGVAANLEDAKRWYWRAAAQ DFPKARERLEDLKRAGKNGRPRQRERISRSRIEKQQEGECSIM* |
| Coding | >OphauB2|5055 ATGGATGCGCGACAAGACATGACGTCGCTGCAACGAGAAGTCGCGGCGCCGTATGCGGGACCCGCTGGTCGGGCA ATACCGCCCAGGCCATCGACTGCCTCTGGAACCCGACAACAGCCTCGGCGCATGCAAACCATGGACCCAGAGGGA CCGTCTGCCTACGGCTCGCATGGATCCGAGCCCATGCCTTCGTCGGACGACGTCTTCAACTCTTACTTTGATAAT GCGCCGGGTCCAGGCACCTCTGGCCAGGCTTTCCCACCACACCAAGGCGCGCACCAGATGCCGAGACTGCATCAC GCCAAATCAGAAGCCACGTTTCGCGAACCGCAGGCAGCCGTATTCGAAATGGCGGGCGATATTCCATCGGTTCCT CCAATGCCGCATACCAAGCTCTACCAGCCCCAATTTGCTGAAGGATATGGCGGCGCTGGCTACCAGGCTGTGAAG CCGCCGCCTCGCGGCCCCAGTGCTCCTCCAGGAGCTGCCAACGGACACCAGCGCGACGACTACACTGGCAGCGAT GGCCTGTCGAGAACGAAAACCAGCCTTTCGCAGAATAGCAGCACCAATGCCGATGCACTGCCTTCACACCCCACG CCGGTTCGGCCGGGACTCGTGTCCAATTCGGGCCCCAAGTTGAACGACAGGCCGCCGCCTGTTCGTAACTATGGC GGCGTGCCTCAGTCTGGCCCAATGCGGACCCAAGTCATGGCGCCACAGCAGCAACAGTTTCAACGGCCCTTTGCT CGCATGGGCCACGACGTGTCTGAAGGCGGGGCCCCGTCGGACCCTGTGACGACGCAGGAGCTGGAAGCATTGCGC ATGGCAATCAAGGCAAACCCCGCCGACCAGGAATCAGCACTCCGTCTGGCTAGGCGGCTGATTGAAGCGTCAGAT GTACTTGTTTCCAAAGCACCAGACGTCAAGCACAGGAACAAGATGCGCGATCGCTACTTGATGGACGCGCACAAA ATCCTCAAGAAACTGGCCAATGCGCAGAATCAGGATGCCATGTTCGCCATGGCCGACGGGCTTGGCAAAGGCCTC TTTGGTCACGAGCCTGACAACAAGGAGGCATTCACGCTGTACCAGTCAGCCGCAAAAATGGGCCACGCCGCCGCA GCGTACAGAACAGCCGTCTGCTGTGAGATTGGCCACGAGGAAGGAGGCGGCACGCGCAAAGATCCCCTCAAGGCA ATGCAGTGGTACAAGCGAGCTGCCACGCTGGGCGATCCGCCTGCCATGTACAAGGTGGGCATGATTCTGCTCAAG GGCTTGTTGGGCCAGCCAAAGAACCCCAGAGAGGCAGTCGGATGGCTCAAGCGAGCGGCAGAGCGGGCCGACACG GAGAATCCACATGCGCTTCACGAGCTGGGACTGCTTTACGAGTCGGCACAGCCAAACGACGCAATGATTCGCGAC GAGCGTTATGCCCTGACCTTGTTTCTCCAAGCCGCTGATCTGGGATACAAGTTTTCCCAGTTTCGGCTGGGCTGT GCCTTTGAGTATGGCTTGATGGGCTGCCCCATTGATCCCAGGCAATCCATCTACTGGTACTCCAAGGCGGCGACA CAAGAGGAACATCAATCAGAGCTGGCCTTGAGCGGCTGGTACCTGACGGGCAGCGAGGGAGTGCTGGGGCAGAGC GATACGGAAGCCTACCTGTGGGCCAGAAAGGCGGCAGTGGCTGGGCTAGCCAAGGCTGAATATGCCATGGGCTAC TTTACTGAAGTTGGCATTGGCGTAGCGGCCAACCTGGAAGACGCCAAACGCTGGTATTGGAGAGCTGCAGCCCAA GACTTTCCCAAAGCTCGCGAGCGGCTCGAAGATCTCAAGAGAGCAGGCAAGAATGGGCGCCCGAGGCAGCGGGAA CGGATCTCGCGAAGCCGCATCGAGAAGCAGCAAGAAGGCGAATGCAGCATCATGTGA |
| Transcript | >OphauB2|5055 ATGGATGCGCGACAAGACATGACGTCGCTGCAACGAGAAGTCGCGGCGCCGTATGCGGGACCCGCTGGTCGGGCA ATACCGCCCAGGCCATCGACTGCCTCTGGAACCCGACAACAGCCTCGGCGCATGCAAACCATGGACCCAGAGGGA CCGTCTGCCTACGGCTCGCATGGATCCGAGCCCATGCCTTCGTCGGACGACGTCTTCAACTCTTACTTTGATAAT GCGCCGGGTCCAGGCACCTCTGGCCAGGCTTTCCCACCACACCAAGGCGCGCACCAGATGCCGAGACTGCATCAC GCCAAATCAGAAGCCACGTTTCGCGAACCGCAGGCAGCCGTATTCGAAATGGCGGGCGATATTCCATCGGTTCCT CCAATGCCGCATACCAAGCTCTACCAGCCCCAATTTGCTGAAGGATATGGCGGCGCTGGCTACCAGGCTGTGAAG CCGCCGCCTCGCGGCCCCAGTGCTCCTCCAGGAGCTGCCAACGGACACCAGCGCGACGACTACACTGGCAGCGAT GGCCTGTCGAGAACGAAAACCAGCCTTTCGCAGAATAGCAGCACCAATGCCGATGCACTGCCTTCACACCCCACG CCGGTTCGGCCGGGACTCGTGTCCAATTCGGGCCCCAAGTTGAACGACAGGCCGCCGCCTGTTCGTAACTATGGC GGCGTGCCTCAGTCTGGCCCAATGCGGACCCAAGTCATGGCGCCACAGCAGCAACAGTTTCAACGGCCCTTTGCT CGCATGGGCCACGACGTGTCTGAAGGCGGGGCCCCGTCGGACCCTGTGACGACGCAGGAGCTGGAAGCATTGCGC ATGGCAATCAAGGCAAACCCCGCCGACCAGGAATCAGCACTCCGTCTGGCTAGGCGGCTGATTGAAGCGTCAGAT GTACTTGTTTCCAAAGCACCAGACGTCAAGCACAGGAACAAGATGCGCGATCGCTACTTGATGGACGCGCACAAA ATCCTCAAGAAACTGGCCAATGCGCAGAATCAGGATGCCATGTTCGCCATGGCCGACGGGCTTGGCAAAGGCCTC TTTGGTCACGAGCCTGACAACAAGGAGGCATTCACGCTGTACCAGTCAGCCGCAAAAATGGGCCACGCCGCCGCA GCGTACAGAACAGCCGTCTGCTGTGAGATTGGCCACGAGGAAGGAGGCGGCACGCGCAAAGATCCCCTCAAGGCA ATGCAGTGGTACAAGCGAGCTGCCACGCTGGGCGATCCGCCTGCCATGTACAAGGTGGGCATGATTCTGCTCAAG GGCTTGTTGGGCCAGCCAAAGAACCCCAGAGAGGCAGTCGGATGGCTCAAGCGAGCGGCAGAGCGGGCCGACACG GAGAATCCACATGCGCTTCACGAGCTGGGACTGCTTTACGAGTCGGCACAGCCAAACGACGCAATGATTCGCGAC GAGCGTTATGCCCTGACCTTGTTTCTCCAAGCCGCTGATCTGGGATACAAGTTTTCCCAGTTTCGGCTGGGCTGT GCCTTTGAGTATGGCTTGATGGGCTGCCCCATTGATCCCAGGCAATCCATCTACTGGTACTCCAAGGCGGCGACA CAAGAGGAACATCAATCAGAGCTGGCCTTGAGCGGCTGGTACCTGACGGGCAGCGAGGGAGTGCTGGGGCAGAGC GATACGGAAGCCTACCTGTGGGCCAGAAAGGCGGCAGTGGCTGGGCTAGCCAAGGCTGAATATGCCATGGGCTAC TTTACTGAAGTTGGCATTGGCGTAGCGGCCAACCTGGAAGACGCCAAACGCTGGTATTGGAGAGCTGCAGCCCAA GACTTTCCCAAAGCTCGCGAGCGGCTCGAAGATCTCAAGAGAGCAGGCAAGAATGGGCGCCCGAGGCAGCGGGAA CGGATCTCGCGAAGCCGCATCGAGAAGCAGCAAGAAGGCGAATGCAGCATCATGTGA |
| Gene | >OphauB2|5055 ATGGATGCGCGACAAGACATGACGTCGCTGCAACGAGAAGTCGCGGCGCCGTATGCGGGACCCGCTGGTCGGGCA ATACCGCCCAGGCCATCGACTGCCTCTGGAACCCGACAACAGCCTCGGCGCATGCAAACCATGGACCCAGAGGGA CCGTCTGCCTACGGCTCGCATGGATCCGAGCCCATGCCTTCGTCGGACGACGTCTTCAACTCTTACTTTGATAAT GCGCCGGGTCCAGGCACCTCTGGCCAGGCTTTCCCACCACACCAAGGCGCGCACCAGATGCCGAGACTGCATCAC GCCAAATCAGAAGCCACGTTTCGCGAACCGCAGGCAGCCGTATTCGAAATGGCGGGCGATATTCCATCGGTTCCT CCAATGCCGCATACCAAGCTCTACCAGCCCCAATTTGCTGAAGGATATGGCGGCGCTGGCTACCAGGCTGTGAAG CCGCCGCCTCGCGGCCCCAGTGCTCCTCCAGGAGCTGCCAACGGACACCAGCGCGACGACTACACTGGCAGCGAT GGCCTGTCGAGAACGAAAACCAGCCTTTCGCAGAATAGCAGCACCAATGCCGATGCACTGCCTTCACACCCCACG CCGGTTCGGCCGGGACTCGTGTCCAATTCGGGCCCCAAGTTGAACGACAGGCCGCCGCCTGTTCGTAACTATGGC GGCGTGCCTCAGTCTGGCCCAATGCGGACCCAAGTCATGGCGCCACAGCAGCAACAGTTTCAACGGCCCTTTGCT CGCATGGGCCACGACGTGTCTGAAGGCGGGGCCCCGTCGGACCCTGTGACGACGCAGGAGCTGGAAGCATTGCGC ATGGCAATCAAGGCAAACCCCGCCGACCAGGAATCAGCACTCCGTCTGGCTAGGCGGCTGATTGAAGCGTCAGAT GTACTTGTTTCCAAAGCACCAGACGTCAAGCACAGGAACAAGATGCGCGATCGCTACTTGATGGACGCGCACAAA ATCCTCAAGAAACTGGCCAATGCGCAGAATCAGGATGCCATGTTCGCCATGGCCGACGGGCTTGGCAAAGGCCTC TTTGGTCACGAGCCTGACAACAAGGAGGCATTCACGCTGTACCAGTCAGCCGCAAAAATGGGCCACGCCGCCGCA GCGTACAGAACAGCCGTCTGCTGTGAGATTGGCCACGAGGAAGGAGGCGGCACGCGCAAAGATCCCCTCAAGGCA ATGCAGTGGTACAAGCGAGCTGCCACGCTGGGCGATCCGCCTGCCATGTACAAGGTGGGCATGATTCTGCTCAAG GGCTTGTTGGGCCAGCCAAAGAACCCCAGAGAGGCAGTCGGATGGCTCAAGCGAGCGGCAGAGCGGGCCGACACG GAGAATCCACATGCGCTTCACGAGCTGGGACTGCTTTACGAGTCGGCACAGCCAAACGACGCAATGATTCGCGAC GAGCGTTATGCCCTGACCTTGTTTCTCCAAGCCGCTGATCTGGGATACAAGTTTTCCCAGTTTCGGCTGGGCTGT GCCTTTGAGTATGGCTTGATGGGCTGCCCCATTGATCCCAGGCAATCCATCTACTGGTACTCCAAGGCGGCGACA CAAGAGGAACATCAATCAGAGCTGGCCTTGAGCGGCTGGTACCTGACGGGCAGCGAGGGAGTGCTGGGGCAGAGC GATACGGAAGCCTACCTGTGGGCCAGAAAGGCGGCAGTGGCTGGGCTAGCCAAGGCTGAATATGCCATGGGCTAC TTTACTGAAGTTGGCATTGGCGTAGCGGCCAACCTGGAAGACGCCAAACGCTGGTATTGGAGAGCTGCAGGTAAG AAGTGCTTGCGCAAAACATTGTCACTCCCCCCTTGGATGGTGTGTTTGTTTTTGCACTGGACAATCTCAAGAGAC TGACGGCGCCATCACAGCCCAAGACTTTCCCAAAGCTCGCGAGCGGCTCGAAGATCTCAAGAGAGCAGGCAAGAA TGGGCGCCCGAGGCAGCGGGAACGGATCTCGCGAAGCCGCATCGAGAAGCAGCAAGAAGGCGAATGCAGCATCAT GTGA |