Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|5024
Gene name
LocationContig_364:382..1505
Strand+
Gene length (bp)1123
Transcript length (bp)855
Coding sequence length (bp)855
Protein length (aa) 285

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00125 Histone Core histone H2A/H2B/H3/H4 3.4E-16 81 151
PF00808 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone 5.8E-15 88 151

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q02516|HAP5_YEAST Transcriptional activator HAP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HAP5 PE=1 SV=1 51 166 3.0E-52
sp|P79007|HAP5_SCHPO Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hap5 PE=2 SV=1 11 178 7.0E-50
sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1 65 204 5.0E-44
sp|Q9SMP0|NFYC1_ARATH Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1 68 204 3.0E-43
sp|Q8LCG7|NFYC2_ARATH Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=2 SV=2 66 168 3.0E-42
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Swissprot ID Swissprot Description Start End E-value
sp|Q02516|HAP5_YEAST Transcriptional activator HAP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HAP5 PE=1 SV=1 51 166 3.0E-52
sp|P79007|HAP5_SCHPO Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hap5 PE=2 SV=1 11 178 7.0E-50
sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1 65 204 5.0E-44
sp|Q9SMP0|NFYC1_ARATH Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1 68 204 3.0E-43
sp|Q8LCG7|NFYC2_ARATH Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=2 SV=2 66 168 3.0E-42
sp|P70353|NFYC_MOUSE Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=1 SV=2 66 183 3.0E-42
sp|Q5E9X1|NFYC_BOVIN Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC PE=2 SV=1 66 183 3.0E-42
sp|Q62725|NFYC_RAT Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1 66 183 3.0E-42
sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1 69 204 4.0E-42
sp|Q5RA23|NFYC_PONAB Nuclear transcription factor Y subunit gamma OS=Pongo abelii GN=NFYC PE=2 SV=1 66 183 4.0E-42
sp|Q9ZVL3|NFYC3_ARATH Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=2 SV=1 68 185 2.0E-41
sp|Q13952|NFYC_HUMAN Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3 66 183 6.0E-41
sp|Q9FGP7|NFYC6_ARATH Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana GN=NFYC6 PE=2 SV=1 66 173 6.0E-38
sp|Q557I1|NFYC_DICDI Nuclear transcription factor Y subunit gamma OS=Dictyostelium discoideum GN=nfyc-1 PE=3 SV=1 58 168 2.0E-36
sp|Q4PSE2|NFYC8_ARATH Nuclear transcription factor Y subunit C-8 OS=Arabidopsis thaliana GN=NFYC8 PE=2 SV=1 66 180 2.0E-29
sp|Q9FGP6|NFYC5_ARATH Nuclear transcription factor Y subunit C-5 OS=Arabidopsis thaliana GN=NFYC5 PE=2 SV=1 66 169 1.0E-26
sp|Q9FGP8|NFYC7_ARATH Nuclear transcription factor Y subunit C-7 OS=Arabidopsis thaliana GN=NFYC7 PE=2 SV=1 83 167 3.0E-25
sp|Q58CM8|NFYCA_ARATH Nuclear transcription factor Y subunit C-10 OS=Arabidopsis thaliana GN=NFYC10 PE=2 SV=1 66 165 3.0E-23
sp|Q9CQ36|DPOE4_MOUSE DNA polymerase epsilon subunit 4 OS=Mus musculus GN=Pole4 PE=1 SV=1 84 160 2.0E-13
sp|Q9NR33|DPOE4_HUMAN DNA polymerase epsilon subunit 4 OS=Homo sapiens GN=POLE4 PE=1 SV=2 85 160 3.0E-13
sp|A6QQ14|DPOE4_BOVIN DNA polymerase epsilon subunit 4 OS=Bos taurus GN=POLE4 PE=3 SV=1 85 160 5.0E-13
sp|Q9NRG0|CHRC1_HUMAN Chromatin accessibility complex protein 1 OS=Homo sapiens GN=CHRAC1 PE=1 SV=1 85 171 8.0E-12
sp|Q9JKP8|CHRC1_MOUSE Chromatin accessibility complex protein 1 OS=Mus musculus GN=Chrac1 PE=1 SV=1 83 172 3.0E-11
sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog OS=Dictyostelium discoideum GN=drap1 PE=3 SV=1 88 175 2.0E-08
sp|C6Y4D0|YCGV_SCHPO Putative transcription factor C16C4.22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC16C4.22 PE=3 SV=1 89 163 6.0E-08
sp|Q6BX14|DPB3_DEBHA DNA polymerase epsilon subunit C OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DPB3 PE=3 SV=1 89 166 8.0E-08
sp|A0JPP1|NC2A_RAT Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1 88 164 3.0E-07
sp|Q14919|NC2A_HUMAN Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3 88 164 3.0E-07
sp|Q2YDP3|NC2A_BOVIN Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1 88 164 4.0E-07
sp|Q9D6N5|NC2A_MOUSE Dr1-associated corepressor OS=Mus musculus GN=Drap1 PE=1 SV=3 88 164 5.0E-07
sp|Q6C6M5|DPB3_YARLI DNA polymerase epsilon subunit C OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=DPB3 PE=3 SV=1 88 199 3.0E-06
sp|Q10315|DPB3_SCHPO DNA polymerase epsilon subunit C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dpb3 PE=1 SV=1 88 166 5.0E-06
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GO

GO Term Description Terminal node
GO:0003677 DNA binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003676 nucleic acid binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 27 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Histone-like TF

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|5024
MEPPNQSAAQSHTQHNRPAPVYDPSQGGHYGACAALASQGFAPAELYTGPWANVHQGLTGQYKDILTTYWQQTIN
HLESDTHDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASA
LAKSDMFDFLIDIVPREEASSHAKRSAAQPAAPSAVTTASGQAQMPGQHAAMGQATNHASHSLDTADYMGSHHLA
ADQDYRQNPSMYPGQVPQPPSAPYGQAQAPPAMYGDMEGMYPYSAMQPQQAPMSSEEFE*
Coding >OphauB2|5024
ATGGAACCCCCAAATCAATCTGCCGCACAGTCGCACACTCAGCACAATCGGCCTGCGCCTGTTTATGACCCCAGC
CAAGGCGGCCATTATGGTGCATGCGCTGCCCTGGCTTCACAAGGCTTTGCTCCAGCAGAACTCTATACGGGACCT
TGGGCCAATGTTCACCAAGGTCTTACAGGGCAATACAAAGATATCCTGACAACCTACTGGCAGCAAACAATAAAT
CACCTCGAAAGTGATACTCATGATTACAAGATTCATCAGTTGCCTCTAGCGCGCATCAAAAAAGTCATGAAGGCC
GATCCAGAAGTCAAGATGATATCTGCCGAGGCACCCATTTTGTTTGCTAAAGGCTGTGACATTTTTATTACTGAG
CTTACTATGCGCGCTTGGATACACGCTGAGGAAAACAAGCGTCGCACGCTTCAACGCTCCGATATTGCTTCTGCT
CTCGCCAAGTCTGACATGTTTGACTTCCTCATCGACATTGTTCCACGAGAAGAGGCTTCCTCGCATGCGAAAAGG
AGTGCAGCTCAGCCTGCCGCCCCGTCAGCCGTTACTACCGCTTCAGGACAGGCCCAGATGCCCGGTCAGCACGCA
GCGATGGGCCAGGCTACCAACCACGCCTCTCATTCTCTCGACACCGCTGATTACATGGGAAGCCATCATCTTGCT
GCTGATCAGGACTACCGTCAAAACCCGAGCATGTATCCAGGACAGGTTCCACAGCCACCGTCGGCTCCATACGGC
CAAGCCCAGGCTCCACCAGCTATGTACGGAGACATGGAGGGCATGTATCCCTACTCTGCCATGCAGCCACAGCAG
GCACCCATGTCGTCAGAAGAATTCGAATAG
Transcript >OphauB2|5024
ATGGAACCCCCAAATCAATCTGCCGCACAGTCGCACACTCAGCACAATCGGCCTGCGCCTGTTTATGACCCCAGC
CAAGGCGGCCATTATGGTGCATGCGCTGCCCTGGCTTCACAAGGCTTTGCTCCAGCAGAACTCTATACGGGACCT
TGGGCCAATGTTCACCAAGGTCTTACAGGGCAATACAAAGATATCCTGACAACCTACTGGCAGCAAACAATAAAT
CACCTCGAAAGTGATACTCATGATTACAAGATTCATCAGTTGCCTCTAGCGCGCATCAAAAAAGTCATGAAGGCC
GATCCAGAAGTCAAGATGATATCTGCCGAGGCACCCATTTTGTTTGCTAAAGGCTGTGACATTTTTATTACTGAG
CTTACTATGCGCGCTTGGATACACGCTGAGGAAAACAAGCGTCGCACGCTTCAACGCTCCGATATTGCTTCTGCT
CTCGCCAAGTCTGACATGTTTGACTTCCTCATCGACATTGTTCCACGAGAAGAGGCTTCCTCGCATGCGAAAAGG
AGTGCAGCTCAGCCTGCCGCCCCGTCAGCCGTTACTACCGCTTCAGGACAGGCCCAGATGCCCGGTCAGCACGCA
GCGATGGGCCAGGCTACCAACCACGCCTCTCATTCTCTCGACACCGCTGATTACATGGGAAGCCATCATCTTGCT
GCTGATCAGGACTACCGTCAAAACCCGAGCATGTATCCAGGACAGGTTCCACAGCCACCGTCGGCTCCATACGGC
CAAGCCCAGGCTCCACCAGCTATGTACGGAGACATGGAGGGCATGTATCCCTACTCTGCCATGCAGCCACAGCAG
GCACCCATGTCGTCAGAAGAATTCGAATAG
Gene >OphauB2|5024
ATGGAACCCCCAAATCAATCTGCCGCACAGTCGCACACTCAGCACAATCGGCCTGCGCCTGTTTATGACCCCAGC
CAAGGCGGCCATTATGGTCAGTTGTATTGTACCCTGAAAGACTTATCGTATATTCTAACTGTCTTCAGGTGCATG
CGCTGCCGTATGTTTAAGTCTTCATTTGTCAATAGACCATATCATTCCCCCCCCCCATAAAAGAATAATAAAATA
TAGCTAATACCTTTTCTTCACTACGTTAGCTGGCTTCACAAGGCTTTGCTCCAGCAGAACTCTATACGGGACCTT
GGGCCAATGTTTGTTCTTGCCCCAGTGCTTGTCTCGTCATGTTTTATTGCTGACTGGCAACGCCCCAACAGGTTC
ACCAAGGTCTTACAGGGCAATACAAAGATATCCTGACAACCTACTGGCAGCAAACAATAAATCACCTCGAAAGTG
ATACTCATGATTACAAGATTCATCAGTTGCCTCTAGCGCGCATCAAAAAAGTCATGAAGGCCGATCCAGAAGTCA
AGATGATATCTGCCGAGGCACCCATTTTGTTTGCTAAAGGCTGTGACATTTTTATTACTGAGCTTACTATGCGCG
CTTGGATACACGCTGAGGAAAACAAGCGTCGCACGCTTCAACGCTCCGATATTGCTTCTGCTCTCGCCAAGTCTG
ACATGTTTGACTTCCTCATCGACATTGTTCCACGAGAAGAGGCTTCCTCGCATGCGAAAAGGAGTGCAGCTCAGC
CTGCCGCCCCGTCAGCCGTTACTACCGCTTCAGGACAGGCCCAGATGCCCGGTCAGCACGCAGCGATGGGCCAGG
CTACCAACCACGCCTCTCATTCTCTCGACACCGCTGATTACATGGGAAGCCATCATCTTGCTGCTGATCAGGACT
ACCGTCAAAACCCGAGCATGTATCCAGGACAGGTTCCACAGCCACCGTCGGCTCCATACGGCCAAGCCCAGGCTC
CACCAGCTATGTACGGAGACATGGAGGGCATGTATCCCTACTCTGCCATGCAGCCACAGCAGGTGAATATTCTCC
TATGCTCACAAGACTGTGTCATATTCACAAACTCCATTTATAGGCACCCATGTCGTCAGAAGAATTCGAATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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