Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauB2\|495
Gene name
Location	Contig_108:38020..40796
Strand	+
Gene length (bp)	2776
Transcript length (bp)	2463
Coding sequence length (bp)	2463
Protein length (aa)	821

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF16770	RTT107_BRCT_5	Regulator of Ty1 transposition protein 107 BRCT domain	1.1E-25	575	673
PF12738	PTCB-BRCT	twin BRCT domain	4.3E-19	307	369
PF00533	BRCT	BRCA1 C Terminus (BRCT) domain	4.4E-06	8	90
PF00533	BRCT	BRCA1 C Terminus (BRCT) domain	7.6E-09	304	373

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q10337\|BRC1_SCHPO	BRCT-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brc1 PE=1 SV=1	15	391	3.0E-26
sp\|Q10337\|BRC1_SCHPO	BRCT-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brc1 PE=1 SV=1	505	811	1.0E-20
sp\|P38850\|RT107_YEAST	Regulator of Ty1 transposition protein 107 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTT107 PE=1 SV=1	307	410	9.0E-10
sp\|Q5TM68\|MDC1_MACMU	Mediator of DNA damage checkpoint protein 1 OS=Macaca mulatta GN=MDC1 PE=3 SV=1	628	713	4.0E-09
sp\|Q14676\|MDC1_HUMAN	Mediator of DNA damage checkpoint protein 1 OS=Homo sapiens GN=MDC1 PE=1 SV=3	628	713	4.0E-09

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q10337\|BRC1_SCHPO	BRCT-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brc1 PE=1 SV=1	15	391	3.0E-26
sp\|Q10337\|BRC1_SCHPO	BRCT-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brc1 PE=1 SV=1	505	811	1.0E-20
sp\|P38850\|RT107_YEAST	Regulator of Ty1 transposition protein 107 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTT107 PE=1 SV=1	307	410	9.0E-10
sp\|Q5TM68\|MDC1_MACMU	Mediator of DNA damage checkpoint protein 1 OS=Macaca mulatta GN=MDC1 PE=3 SV=1	628	713	4.0E-09
sp\|Q14676\|MDC1_HUMAN	Mediator of DNA damage checkpoint protein 1 OS=Homo sapiens GN=MDC1 PE=1 SV=3	628	713	4.0E-09
sp\|Q7YR40\|MDC1_PANTR	Mediator of DNA damage checkpoint protein 1 OS=Pan troglodytes GN=MDC1 PE=3 SV=1	628	713	5.0E-09
sp\|Q767L8\|MDC1_PIG	Mediator of DNA damage checkpoint protein 1 OS=Sus scrofa GN=MDC1 PE=3 SV=1	628	713	2.0E-08
sp\|Q5PSV9\|MDC1_MOUSE	Mediator of DNA damage checkpoint protein 1 OS=Mus musculus GN=Mdc1 PE=1 SV=1	628	730	1.0E-06
sp\|Q5U2M8\|MDC1_RAT	Mediator of DNA damage checkpoint protein 1 OS=Rattus norvegicus GN=Mdc1 PE=1 SV=2	628	713	3.0E-06

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 18	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauB2\|495 MADELGSSSVFSECVVAFVPSSTLAPKHISELAKVVEDNGATICEPRRDGTIAMGKVTHIVSNTIDFAQYVESQA VMIPVVSTQWITASISRRRQAQVRPFSPDPRMIFAEVVVTCGDVPVMDKEGILGATMALGGQESKDVNRLTTHVC SLSMDHPKVQMALKMMEQKGWKGKIVLPHWFDACFKLGKRIDEGPYLLPNPKVFSLDPADELEIPKTPSLEGATS ANPQWLPVPPDIKSGRPPVTVFRDRKVFLSSDLGITSRLVKVLADLIKNGGGKWVDDVDDCDMFICQYRDGSQKG IEGFENLRITVSNYGGEARTYLENLIRACGAEYTKTMRPENTHLVTARDTSDKCKAAPEWGVAVINHLWLEESYA KCEKKQINLAKYNHFPPRTNLGEIIGQTFLDESCLREIYYPGGEDSMSPRAKRKRKILEAAEDNAYHQGPAEGVV IGRSHEQKSANVFQAESNRSSVETENAKMASVRTPRRPQPGKENSSPSIVSVGSRSAKAKAKDLLQTIAPDIALY EKEKKRHTKAGVPWGGKRAADNAEKQTKAKVTAAKALQEAEDEASATPVRPAKKARPSLPEIEMRIAITSYDKWT DDSNQEDRDRLRLRNLGIQVVQHPPCDYIVAPRIVRTVKFLCSLAWGARVLSVDFIDEVLKKGDIPIPEEYALND QEGESRNNFRIAKSVARAKAHKGRLLQGIPIYCTEKIKGGWESYQSISQANGAIFKVYRARSGTTIKPTTAEEDG DTAPDPVYLLTHNSTEEKQLWSRFKEMAKRGNMEPRVVAGDWLLDVCMAQEVRFSEKFLAENWYVSEGGK*
Coding	>OphauB2\|495 ATGGCAGACGAACTTGGCAGCAGTAGTGTCTTCAGTGAGTGCGTTGTTGCCTTTGTGCCGAGCAGCACGCTGGCA CCTAAACACATTAGCGAGTTAGCCAAAGTGGTTGAAGATAATGGAGCGACAATTTGCGAGCCTCGACGTGATGGA ACGATAGCCATGGGCAAGGTGACGCACATTGTTTCCAATACAATTGACTTTGCGCAATATGTCGAGTCTCAGGCT GTCATGATACCTGTCGTGTCGACACAATGGATCACTGCTTCGATATCACGGCGGCGGCAGGCCCAAGTGCGACCA TTTTCACCCGACCCGCGCATGATTTTTGCCGAAGTGGTGGTGACATGTGGTGATGTGCCCGTCATGGATAAGGAG GGAATTCTCGGTGCCACCATGGCATTGGGTGGCCAAGAGTCAAAGGACGTGAATCGCCTAACGACGCATGTGTGT TCCTTGTCCATGGACCACCCAAAGGTGCAGATGGCTTTGAAGATGATGGAGCAAAAGGGCTGGAAGGGCAAGATT GTCTTGCCACACTGGTTCGATGCTTGCTTCAAGCTCGGCAAACGAATCGATGAAGGCCCGTACCTCCTTCCAAAC CCTAAAGTATTCAGCCTCGATCCTGCCGATGAACTCGAGATTCCTAAAACCCCCTCTCTTGAGGGCGCCACTTCA GCCAATCCACAGTGGCTACCGGTGCCCCCAGATATCAAGTCCGGCCGTCCCCCTGTCACCGTGTTTCGTGACCGA AAAGTCTTCCTGTCCTCTGATCTGGGAATTACGTCCCGTCTTGTCAAGGTATTGGCTGACTTGATTAAAAATGGC GGCGGGAAATGGGTCGACGACGTCGACGACTGCGACATGTTCATCTGCCAGTACCGCGACGGGTCTCAGAAAGGA ATTGAAGGGTTCGAGAATCTGCGCATAACCGTCTCCAACTACGGCGGCGAGGCGCGTACTTACCTCGAGAACCTC ATCAGAGCCTGTGGCGCCGAATACACCAAGACAATGAGACCGGAAAACACGCACCTCGTGACGGCCCGCGATACG AGTGACAAGTGCAAGGCGGCTCCCGAATGGGGCGTCGCGGTCATCAACCACCTCTGGCTCGAGGAAAGCTATGCC AAGTGTGAGAAGAAGCAGATCAATCTTGCAAAGTATAACCATTTCCCCCCACGCACCAACCTTGGCGAAATTATT GGTCAAACTTTTTTGGACGAATCGTGTCTGCGAGAAATTTATTATCCTGGGGGCGAAGATTCCATGTCGCCCAGG GCAAAGAGGAAACGCAAGATTCTCGAGGCCGCCGAAGACAATGCGTACCATCAAGGACCTGCCGAGGGTGTCGTC ATAGGGCGGTCGCACGAGCAAAAAAGTGCAAATGTCTTTCAGGCCGAGTCGAATCGCAGCAGTGTCGAGACGGAA AATGCCAAGATGGCATCGGTGCGGACACCCAGACGGCCCCAGCCGGGCAAGGAAAACAGCAGCCCATCGATAGTG TCAGTGGGCAGTCGCAGTGCCAAGGCCAAGGCCAAAGACCTCCTACAGACGATTGCGCCCGATATCGCCCTGTAC GAAAAGGAAAAGAAGAGACATACCAAGGCGGGTGTTCCTTGGGGAGGAAAACGGGCTGCGGATAACGCCGAGAAG CAGACCAAGGCCAAGGTGACGGCAGCCAAGGCTTTACAAGAGGCGGAAGATGAAGCTTCTGCAACGCCTGTGAGA CCTGCCAAAAAGGCACGACCCTCGCTCCCAGAAATTGAAATGCGCATTGCCATTACCTCCTATGACAAATGGACA GACGACAGTAATCAGGAGGATCGCGACAGGTTACGGTTACGCAATTTGGGTATACAGGTTGTCCAGCACCCTCCT TGCGACTACATTGTTGCGCCGCGCATTGTGCGCACCGTCAAGTTTCTCTGCTCTCTAGCATGGGGTGCGCGCGTT CTTTCCGTCGACTTCATTGACGAGGTTCTCAAAAAGGGCGATATTCCAATACCAGAGGAATACGCCTTGAATGAT CAAGAGGGTGAATCAAGGAACAACTTTCGCATCGCAAAGTCAGTGGCGAGGGCCAAGGCCCACAAGGGAAGACTG TTGCAGGGAATCCCGATATACTGCACTGAGAAAATCAAGGGGGGTTGGGAGAGTTACCAGTCCATTTCCCAGGCC AATGGCGCCATTTTCAAGGTGTACCGGGCGCGCAGTGGAACAACCATCAAGCCAACAACAGCCGAGGAGGACGGC GACACGGCGCCAGATCCGGTCTATCTGTTGACACATAACAGCACCGAAGAGAAGCAGCTGTGGTCGCGGTTCAAG GAAATGGCGAAGAGGGGTAACATGGAGCCGCGGGTAGTGGCAGGCGACTGGTTGTTGGATGTGTGCATGGCACAA GAGGTGCGGTTTAGTGAAAAGTTTTTGGCGGAGAATTGGTACGTGTCTGAAGGTGGTAAATGA
Transcript	>OphauB2\|495 ATGGCAGACGAACTTGGCAGCAGTAGTGTCTTCAGTGAGTGCGTTGTTGCCTTTGTGCCGAGCAGCACGCTGGCA CCTAAACACATTAGCGAGTTAGCCAAAGTGGTTGAAGATAATGGAGCGACAATTTGCGAGCCTCGACGTGATGGA ACGATAGCCATGGGCAAGGTGACGCACATTGTTTCCAATACAATTGACTTTGCGCAATATGTCGAGTCTCAGGCT GTCATGATACCTGTCGTGTCGACACAATGGATCACTGCTTCGATATCACGGCGGCGGCAGGCCCAAGTGCGACCA TTTTCACCCGACCCGCGCATGATTTTTGCCGAAGTGGTGGTGACATGTGGTGATGTGCCCGTCATGGATAAGGAG GGAATTCTCGGTGCCACCATGGCATTGGGTGGCCAAGAGTCAAAGGACGTGAATCGCCTAACGACGCATGTGTGT TCCTTGTCCATGGACCACCCAAAGGTGCAGATGGCTTTGAAGATGATGGAGCAAAAGGGCTGGAAGGGCAAGATT GTCTTGCCACACTGGTTCGATGCTTGCTTCAAGCTCGGCAAACGAATCGATGAAGGCCCGTACCTCCTTCCAAAC CCTAAAGTATTCAGCCTCGATCCTGCCGATGAACTCGAGATTCCTAAAACCCCCTCTCTTGAGGGCGCCACTTCA GCCAATCCACAGTGGCTACCGGTGCCCCCAGATATCAAGTCCGGCCGTCCCCCTGTCACCGTGTTTCGTGACCGA AAAGTCTTCCTGTCCTCTGATCTGGGAATTACGTCCCGTCTTGTCAAGGTATTGGCTGACTTGATTAAAAATGGC GGCGGGAAATGGGTCGACGACGTCGACGACTGCGACATGTTCATCTGCCAGTACCGCGACGGGTCTCAGAAAGGA ATTGAAGGGTTCGAGAATCTGCGCATAACCGTCTCCAACTACGGCGGCGAGGCGCGTACTTACCTCGAGAACCTC ATCAGAGCCTGTGGCGCCGAATACACCAAGACAATGAGACCGGAAAACACGCACCTCGTGACGGCCCGCGATACG AGTGACAAGTGCAAGGCGGCTCCCGAATGGGGCGTCGCGGTCATCAACCACCTCTGGCTCGAGGAAAGCTATGCC AAGTGTGAGAAGAAGCAGATCAATCTTGCAAAGTATAACCATTTCCCCCCACGCACCAACCTTGGCGAAATTATT GGTCAAACTTTTTTGGACGAATCGTGTCTGCGAGAAATTTATTATCCTGGGGGCGAAGATTCCATGTCGCCCAGG GCAAAGAGGAAACGCAAGATTCTCGAGGCCGCCGAAGACAATGCGTACCATCAAGGACCTGCCGAGGGTGTCGTC ATAGGGCGGTCGCACGAGCAAAAAAGTGCAAATGTCTTTCAGGCCGAGTCGAATCGCAGCAGTGTCGAGACGGAA AATGCCAAGATGGCATCGGTGCGGACACCCAGACGGCCCCAGCCGGGCAAGGAAAACAGCAGCCCATCGATAGTG TCAGTGGGCAGTCGCAGTGCCAAGGCCAAGGCCAAAGACCTCCTACAGACGATTGCGCCCGATATCGCCCTGTAC GAAAAGGAAAAGAAGAGACATACCAAGGCGGGTGTTCCTTGGGGAGGAAAACGGGCTGCGGATAACGCCGAGAAG CAGACCAAGGCCAAGGTGACGGCAGCCAAGGCTTTACAAGAGGCGGAAGATGAAGCTTCTGCAACGCCTGTGAGA CCTGCCAAAAAGGCACGACCCTCGCTCCCAGAAATTGAAATGCGCATTGCCATTACCTCCTATGACAAATGGACA GACGACAGTAATCAGGAGGATCGCGACAGGTTACGGTTACGCAATTTGGGTATACAGGTTGTCCAGCACCCTCCT TGCGACTACATTGTTGCGCCGCGCATTGTGCGCACCGTCAAGTTTCTCTGCTCTCTAGCATGGGGTGCGCGCGTT CTTTCCGTCGACTTCATTGACGAGGTTCTCAAAAAGGGCGATATTCCAATACCAGAGGAATACGCCTTGAATGAT CAAGAGGGTGAATCAAGGAACAACTTTCGCATCGCAAAGTCAGTGGCGAGGGCCAAGGCCCACAAGGGAAGACTG TTGCAGGGAATCCCGATATACTGCACTGAGAAAATCAAGGGGGGTTGGGAGAGTTACCAGTCCATTTCCCAGGCC AATGGCGCCATTTTCAAGGTGTACCGGGCGCGCAGTGGAACAACCATCAAGCCAACAACAGCCGAGGAGGACGGC GACACGGCGCCAGATCCGGTCTATCTGTTGACACATAACAGCACCGAAGAGAAGCAGCTGTGGTCGCGGTTCAAG GAAATGGCGAAGAGGGGTAACATGGAGCCGCGGGTAGTGGCAGGCGACTGGTTGTTGGATGTGTGCATGGCACAA GAGGTGCGGTTTAGTGAAAAGTTTTTGGCGGAGAATTGGTACGTGTCTGAAGGTGGTAAATGA
Gene	>OphauB2\|495 ATGGCAGACGAACTTGGCAGCAGTAGTGTCTTCAGTGAGTGCGTTGTTGCCTTTGTGCCGAGCAGCACGCTGGCA CCTAAACACATTAGCGAGGTTTGTCCTCTCTGTATCATGGTCCTTGACAAGGCTTGTCAGCTGACCCAAGACTAC AGTTAGCCAAAGTGGTTGAAGATAATGGAGCGACAATTTGCGAGCCTCGACGTGATGGAACGATAGCCATGGGCA AGGTGACGCACATTGTTTCCAATACAATTGACTTTGCGCAATATGTCGAGTCTCAGGCTGTCATGATACCTGTCG TGTCGACACAATGGATCACTGCTTCGATATCACGGCGGCGGCAGGCCCAAGTGCGACCATTTTCACCCGACCCGC GCATGATTTTTGCCGAAGTGGTGGTGACATGTGGTGATGTGCCCGTCATGGATAAGGAGGGAATTCTCGGTGCCA CCATGGCATTGGGTGGCCAAGAGTCAAAGGACGTGAATCGCCTAACGACGCATGTGTGTTCCTTGTCCATGGACC ACCCAAAGGTGCAGATGGCTTTGAAGATGATGGAGCAAAAGGGCTGGAAGGGCAAGATTGTCTTGCCACACTGGT GAGCCCATTATTGATCGAGAAGAAGAGCAGCCGGCCGAAGCCATATGCTGACTTTTTGTCGCCAGGTTCGATGCT TGCTTCAAGCTCGGCAAACGAATCGATGAAGGCCCGTACCTCCTTCCAAACCCTAAAGTATTCAGCCTCGATCCT GCCGATGAACTCGAGATTCCTAAAACCCCCTCTCTTGAGGGCGCCACTTCAGCCAATCCACAGTGGCTACCGGTG CCCCCAGATATCAAGTCCGGCCGTCCCCCTGTCACCGTGTTTCGTGACCGAAAAGTCTTCCTGTCCTCTGATCTG GGAATTACGTCCCGTCTTGTCAAGGTATTGGCTGACTTGATTAAAAATGGCGGCGGGAAATGGGTCGACGACGTC GACGACTGCGACATGTTCATCTGCCAGTACCGCGACGGGTCTCAGTACGTCAAGGCTGCCCAATCATGCAAAGAA ATTGGTAGCCTCTCATGGCTTTTTTACCTTGTTGTTCACAACCAGTGGCGCAACCCTCTGCACCGCTTGTTGCAT TATCCAATACCTAGGAAAGGAATTGAAGGGTTCGAGAATCTGCGCATAACCGTCTCCAACTACGGCGGCGAGGCG CGTACTTACCTCGAGAACCTCATCAGAGCCTGTGGCGCCGAATACACCAAGACAATGAGACCGGAAAACACGCAC CTCGTGACGGCCCGCGATACGAGTGACAAGTGCAAGGCGGCTCCCGAATGGGGCGTCGCGGTCATCAACCACCTC TGGCTCGAGGAAAGCTATGCCAAGTGTGAGAAGAAGCAGATCAATCTTGCAAAGTATAACCATTTCCCCCCACGC ACCAACCTTGGCGAAATTATTGGTCAAACTTTTTTGGACGAATCGTGTCTGCGAGAAATTTATTATCCTGGGGGC GAAGATTCCATGTCGCCCAGGGCAAAGAGGAAACGCAAGATTCTCGAGGCCGCCGAAGACAATGCGTACCATCAA GGACCTGCCGAGGGTGTCGTCATAGGGCGGTCGCACGAGCAAAAAAGTGCAAATGTCTTTCAGGCCGAGTCGAAT CGCAGCAGTGTCGAGACGGAAAATGCCAAGATGGCATCGGTGCGGACACCCAGACGGCCCCAGCCGGGCAAGGAA AACAGCAGCCCATCGATAGTGTCAGTGGGCAGTCGCAGTGCCAAGGCCAAGGCCAAAGACCTCCTACAGACGATT GCGCCCGATATCGCCCTGTACGAAAAGGAAAAGAAGAGACATACCAAGGCGGGTGTTCCTTGGGGAGGAAAACGG GCTGCGGATAACGCCGAGAAGCAGACCAAGGCCAAGGTGACGGCAGCCAAGGCTTTACAAGAGGCGGAAGATGAA GCTTCTGCAACGCCTGTGAGACCTGCCAAAAAGGCACGACCCTCGCTCCCAGAAATTGAAATGCGCATTGCCATT ACCTCCTATGACAAATGGACAGACGACAGTAATCAGGAGGATCGCGACAGGGTGAGTCAATTTACTTTTTTCTTC GAGAGTTTGTGCTTGGTAACGATTGCTAATTACTGCTTTTTAGTTACGGTTACGCAATTTGGGTATACAGGTTGT CCAGCACCCTCCTTGCGACTACATTGTTGCGCCGCGCATTGTGCGCACCGTCAAGTTTCTCTGCTCTCTAGCATG GGGTGCGCGCGTTCTTTCCGTCGACTTCATTGACGAGGTTCTCAAAAAGGGCGATATTCCAATACCAGAGGAATA CGCCTTGAATGATCAAGAGGGTGAATCAAGGAACAACTTTCGCATCGCAAAGTCAGTGGCGAGGGCCAAGGCCCA CAAGGGAAGACTGTTGCAGGGAATCCCGATATACTGCACTGAGAAAATCAAGGGGGGTTGGGAGAGTTACCAGTC CATTTCCCAGGCCAATGGCGCCATTTTCAAGGTGTACCGGGCGCGCAGTGGAACAACCATCAAGCCAACAACAGC CGAGGAGGACGGCGACACGGCGCCAGATCCGGTCTATCTGTTGACACATAACAGCACCGAAGAGAAGCAGCTGTG GTCGCGGTTCAAGGAAATGGCGAAGAGGGGTAACATGGAGCCGCGGGTAGTGGCAGGCGACTGGTTGTTGGATGT GTGCATGGCACAAGAGGTGCGGTTTAGTGAAAAGTTTTTGGCGGAGAATTGGTACGTGTCTGAAGGTGGTAAATG A

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