© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|495 |
| Gene name | |
| Location | Contig_108:38020..40796 |
| Strand | + |
| Gene length (bp) | 2776 |
| Transcript length (bp) | 2463 |
| Coding sequence length (bp) | 2463 |
| Protein length (aa) | 821 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16770 | RTT107_BRCT_5 | Regulator of Ty1 transposition protein 107 BRCT domain | 1.1E-25 | 575 | 673 |
| PF12738 | PTCB-BRCT | twin BRCT domain | 4.3E-19 | 307 | 369 |
| PF00533 | BRCT | BRCA1 C Terminus (BRCT) domain | 4.4E-06 | 8 | 90 |
| PF00533 | BRCT | BRCA1 C Terminus (BRCT) domain | 7.6E-09 | 304 | 373 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10337|BRC1_SCHPO | BRCT-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brc1 PE=1 SV=1 | 15 | 391 | 3.0E-26 |
| sp|Q10337|BRC1_SCHPO | BRCT-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brc1 PE=1 SV=1 | 505 | 811 | 1.0E-20 |
| sp|P38850|RT107_YEAST | Regulator of Ty1 transposition protein 107 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTT107 PE=1 SV=1 | 307 | 410 | 9.0E-10 |
| sp|Q5TM68|MDC1_MACMU | Mediator of DNA damage checkpoint protein 1 OS=Macaca mulatta GN=MDC1 PE=3 SV=1 | 628 | 713 | 4.0E-09 |
| sp|Q14676|MDC1_HUMAN | Mediator of DNA damage checkpoint protein 1 OS=Homo sapiens GN=MDC1 PE=1 SV=3 | 628 | 713 | 4.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10337|BRC1_SCHPO | BRCT-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brc1 PE=1 SV=1 | 15 | 391 | 3.0E-26 |
| sp|Q10337|BRC1_SCHPO | BRCT-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brc1 PE=1 SV=1 | 505 | 811 | 1.0E-20 |
| sp|P38850|RT107_YEAST | Regulator of Ty1 transposition protein 107 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTT107 PE=1 SV=1 | 307 | 410 | 9.0E-10 |
| sp|Q5TM68|MDC1_MACMU | Mediator of DNA damage checkpoint protein 1 OS=Macaca mulatta GN=MDC1 PE=3 SV=1 | 628 | 713 | 4.0E-09 |
| sp|Q14676|MDC1_HUMAN | Mediator of DNA damage checkpoint protein 1 OS=Homo sapiens GN=MDC1 PE=1 SV=3 | 628 | 713 | 4.0E-09 |
| sp|Q7YR40|MDC1_PANTR | Mediator of DNA damage checkpoint protein 1 OS=Pan troglodytes GN=MDC1 PE=3 SV=1 | 628 | 713 | 5.0E-09 |
| sp|Q767L8|MDC1_PIG | Mediator of DNA damage checkpoint protein 1 OS=Sus scrofa GN=MDC1 PE=3 SV=1 | 628 | 713 | 2.0E-08 |
| sp|Q5PSV9|MDC1_MOUSE | Mediator of DNA damage checkpoint protein 1 OS=Mus musculus GN=Mdc1 PE=1 SV=1 | 628 | 730 | 1.0E-06 |
| sp|Q5U2M8|MDC1_RAT | Mediator of DNA damage checkpoint protein 1 OS=Rattus norvegicus GN=Mdc1 PE=1 SV=2 | 628 | 713 | 3.0E-06 |
| Orthofinder run ID | 4 |
| Orthogroup | 3813 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|495 MADELGSSSVFSECVVAFVPSSTLAPKHISELAKVVEDNGATICEPRRDGTIAMGKVTHIVSNTIDFAQYVESQA VMIPVVSTQWITASISRRRQAQVRPFSPDPRMIFAEVVVTCGDVPVMDKEGILGATMALGGQESKDVNRLTTHVC SLSMDHPKVQMALKMMEQKGWKGKIVLPHWFDACFKLGKRIDEGPYLLPNPKVFSLDPADELEIPKTPSLEGATS ANPQWLPVPPDIKSGRPPVTVFRDRKVFLSSDLGITSRLVKVLADLIKNGGGKWVDDVDDCDMFICQYRDGSQKG IEGFENLRITVSNYGGEARTYLENLIRACGAEYTKTMRPENTHLVTARDTSDKCKAAPEWGVAVINHLWLEESYA KCEKKQINLAKYNHFPPRTNLGEIIGQTFLDESCLREIYYPGGEDSMSPRAKRKRKILEAAEDNAYHQGPAEGVV IGRSHEQKSANVFQAESNRSSVETENAKMASVRTPRRPQPGKENSSPSIVSVGSRSAKAKAKDLLQTIAPDIALY EKEKKRHTKAGVPWGGKRAADNAEKQTKAKVTAAKALQEAEDEASATPVRPAKKARPSLPEIEMRIAITSYDKWT DDSNQEDRDRLRLRNLGIQVVQHPPCDYIVAPRIVRTVKFLCSLAWGARVLSVDFIDEVLKKGDIPIPEEYALND QEGESRNNFRIAKSVARAKAHKGRLLQGIPIYCTEKIKGGWESYQSISQANGAIFKVYRARSGTTIKPTTAEEDG DTAPDPVYLLTHNSTEEKQLWSRFKEMAKRGNMEPRVVAGDWLLDVCMAQEVRFSEKFLAENWYVSEGGK* |
| Coding | >OphauB2|495 ATGGCAGACGAACTTGGCAGCAGTAGTGTCTTCAGTGAGTGCGTTGTTGCCTTTGTGCCGAGCAGCACGCTGGCA CCTAAACACATTAGCGAGTTAGCCAAAGTGGTTGAAGATAATGGAGCGACAATTTGCGAGCCTCGACGTGATGGA ACGATAGCCATGGGCAAGGTGACGCACATTGTTTCCAATACAATTGACTTTGCGCAATATGTCGAGTCTCAGGCT GTCATGATACCTGTCGTGTCGACACAATGGATCACTGCTTCGATATCACGGCGGCGGCAGGCCCAAGTGCGACCA TTTTCACCCGACCCGCGCATGATTTTTGCCGAAGTGGTGGTGACATGTGGTGATGTGCCCGTCATGGATAAGGAG GGAATTCTCGGTGCCACCATGGCATTGGGTGGCCAAGAGTCAAAGGACGTGAATCGCCTAACGACGCATGTGTGT TCCTTGTCCATGGACCACCCAAAGGTGCAGATGGCTTTGAAGATGATGGAGCAAAAGGGCTGGAAGGGCAAGATT GTCTTGCCACACTGGTTCGATGCTTGCTTCAAGCTCGGCAAACGAATCGATGAAGGCCCGTACCTCCTTCCAAAC CCTAAAGTATTCAGCCTCGATCCTGCCGATGAACTCGAGATTCCTAAAACCCCCTCTCTTGAGGGCGCCACTTCA GCCAATCCACAGTGGCTACCGGTGCCCCCAGATATCAAGTCCGGCCGTCCCCCTGTCACCGTGTTTCGTGACCGA AAAGTCTTCCTGTCCTCTGATCTGGGAATTACGTCCCGTCTTGTCAAGGTATTGGCTGACTTGATTAAAAATGGC GGCGGGAAATGGGTCGACGACGTCGACGACTGCGACATGTTCATCTGCCAGTACCGCGACGGGTCTCAGAAAGGA ATTGAAGGGTTCGAGAATCTGCGCATAACCGTCTCCAACTACGGCGGCGAGGCGCGTACTTACCTCGAGAACCTC ATCAGAGCCTGTGGCGCCGAATACACCAAGACAATGAGACCGGAAAACACGCACCTCGTGACGGCCCGCGATACG AGTGACAAGTGCAAGGCGGCTCCCGAATGGGGCGTCGCGGTCATCAACCACCTCTGGCTCGAGGAAAGCTATGCC AAGTGTGAGAAGAAGCAGATCAATCTTGCAAAGTATAACCATTTCCCCCCACGCACCAACCTTGGCGAAATTATT GGTCAAACTTTTTTGGACGAATCGTGTCTGCGAGAAATTTATTATCCTGGGGGCGAAGATTCCATGTCGCCCAGG GCAAAGAGGAAACGCAAGATTCTCGAGGCCGCCGAAGACAATGCGTACCATCAAGGACCTGCCGAGGGTGTCGTC ATAGGGCGGTCGCACGAGCAAAAAAGTGCAAATGTCTTTCAGGCCGAGTCGAATCGCAGCAGTGTCGAGACGGAA AATGCCAAGATGGCATCGGTGCGGACACCCAGACGGCCCCAGCCGGGCAAGGAAAACAGCAGCCCATCGATAGTG TCAGTGGGCAGTCGCAGTGCCAAGGCCAAGGCCAAAGACCTCCTACAGACGATTGCGCCCGATATCGCCCTGTAC GAAAAGGAAAAGAAGAGACATACCAAGGCGGGTGTTCCTTGGGGAGGAAAACGGGCTGCGGATAACGCCGAGAAG CAGACCAAGGCCAAGGTGACGGCAGCCAAGGCTTTACAAGAGGCGGAAGATGAAGCTTCTGCAACGCCTGTGAGA CCTGCCAAAAAGGCACGACCCTCGCTCCCAGAAATTGAAATGCGCATTGCCATTACCTCCTATGACAAATGGACA GACGACAGTAATCAGGAGGATCGCGACAGGTTACGGTTACGCAATTTGGGTATACAGGTTGTCCAGCACCCTCCT TGCGACTACATTGTTGCGCCGCGCATTGTGCGCACCGTCAAGTTTCTCTGCTCTCTAGCATGGGGTGCGCGCGTT CTTTCCGTCGACTTCATTGACGAGGTTCTCAAAAAGGGCGATATTCCAATACCAGAGGAATACGCCTTGAATGAT CAAGAGGGTGAATCAAGGAACAACTTTCGCATCGCAAAGTCAGTGGCGAGGGCCAAGGCCCACAAGGGAAGACTG TTGCAGGGAATCCCGATATACTGCACTGAGAAAATCAAGGGGGGTTGGGAGAGTTACCAGTCCATTTCCCAGGCC AATGGCGCCATTTTCAAGGTGTACCGGGCGCGCAGTGGAACAACCATCAAGCCAACAACAGCCGAGGAGGACGGC GACACGGCGCCAGATCCGGTCTATCTGTTGACACATAACAGCACCGAAGAGAAGCAGCTGTGGTCGCGGTTCAAG GAAATGGCGAAGAGGGGTAACATGGAGCCGCGGGTAGTGGCAGGCGACTGGTTGTTGGATGTGTGCATGGCACAA GAGGTGCGGTTTAGTGAAAAGTTTTTGGCGGAGAATTGGTACGTGTCTGAAGGTGGTAAATGA |
| Transcript | >OphauB2|495 ATGGCAGACGAACTTGGCAGCAGTAGTGTCTTCAGTGAGTGCGTTGTTGCCTTTGTGCCGAGCAGCACGCTGGCA CCTAAACACATTAGCGAGTTAGCCAAAGTGGTTGAAGATAATGGAGCGACAATTTGCGAGCCTCGACGTGATGGA ACGATAGCCATGGGCAAGGTGACGCACATTGTTTCCAATACAATTGACTTTGCGCAATATGTCGAGTCTCAGGCT GTCATGATACCTGTCGTGTCGACACAATGGATCACTGCTTCGATATCACGGCGGCGGCAGGCCCAAGTGCGACCA TTTTCACCCGACCCGCGCATGATTTTTGCCGAAGTGGTGGTGACATGTGGTGATGTGCCCGTCATGGATAAGGAG GGAATTCTCGGTGCCACCATGGCATTGGGTGGCCAAGAGTCAAAGGACGTGAATCGCCTAACGACGCATGTGTGT TCCTTGTCCATGGACCACCCAAAGGTGCAGATGGCTTTGAAGATGATGGAGCAAAAGGGCTGGAAGGGCAAGATT GTCTTGCCACACTGGTTCGATGCTTGCTTCAAGCTCGGCAAACGAATCGATGAAGGCCCGTACCTCCTTCCAAAC CCTAAAGTATTCAGCCTCGATCCTGCCGATGAACTCGAGATTCCTAAAACCCCCTCTCTTGAGGGCGCCACTTCA GCCAATCCACAGTGGCTACCGGTGCCCCCAGATATCAAGTCCGGCCGTCCCCCTGTCACCGTGTTTCGTGACCGA AAAGTCTTCCTGTCCTCTGATCTGGGAATTACGTCCCGTCTTGTCAAGGTATTGGCTGACTTGATTAAAAATGGC GGCGGGAAATGGGTCGACGACGTCGACGACTGCGACATGTTCATCTGCCAGTACCGCGACGGGTCTCAGAAAGGA ATTGAAGGGTTCGAGAATCTGCGCATAACCGTCTCCAACTACGGCGGCGAGGCGCGTACTTACCTCGAGAACCTC ATCAGAGCCTGTGGCGCCGAATACACCAAGACAATGAGACCGGAAAACACGCACCTCGTGACGGCCCGCGATACG AGTGACAAGTGCAAGGCGGCTCCCGAATGGGGCGTCGCGGTCATCAACCACCTCTGGCTCGAGGAAAGCTATGCC AAGTGTGAGAAGAAGCAGATCAATCTTGCAAAGTATAACCATTTCCCCCCACGCACCAACCTTGGCGAAATTATT GGTCAAACTTTTTTGGACGAATCGTGTCTGCGAGAAATTTATTATCCTGGGGGCGAAGATTCCATGTCGCCCAGG GCAAAGAGGAAACGCAAGATTCTCGAGGCCGCCGAAGACAATGCGTACCATCAAGGACCTGCCGAGGGTGTCGTC ATAGGGCGGTCGCACGAGCAAAAAAGTGCAAATGTCTTTCAGGCCGAGTCGAATCGCAGCAGTGTCGAGACGGAA AATGCCAAGATGGCATCGGTGCGGACACCCAGACGGCCCCAGCCGGGCAAGGAAAACAGCAGCCCATCGATAGTG TCAGTGGGCAGTCGCAGTGCCAAGGCCAAGGCCAAAGACCTCCTACAGACGATTGCGCCCGATATCGCCCTGTAC GAAAAGGAAAAGAAGAGACATACCAAGGCGGGTGTTCCTTGGGGAGGAAAACGGGCTGCGGATAACGCCGAGAAG CAGACCAAGGCCAAGGTGACGGCAGCCAAGGCTTTACAAGAGGCGGAAGATGAAGCTTCTGCAACGCCTGTGAGA CCTGCCAAAAAGGCACGACCCTCGCTCCCAGAAATTGAAATGCGCATTGCCATTACCTCCTATGACAAATGGACA GACGACAGTAATCAGGAGGATCGCGACAGGTTACGGTTACGCAATTTGGGTATACAGGTTGTCCAGCACCCTCCT TGCGACTACATTGTTGCGCCGCGCATTGTGCGCACCGTCAAGTTTCTCTGCTCTCTAGCATGGGGTGCGCGCGTT CTTTCCGTCGACTTCATTGACGAGGTTCTCAAAAAGGGCGATATTCCAATACCAGAGGAATACGCCTTGAATGAT CAAGAGGGTGAATCAAGGAACAACTTTCGCATCGCAAAGTCAGTGGCGAGGGCCAAGGCCCACAAGGGAAGACTG TTGCAGGGAATCCCGATATACTGCACTGAGAAAATCAAGGGGGGTTGGGAGAGTTACCAGTCCATTTCCCAGGCC AATGGCGCCATTTTCAAGGTGTACCGGGCGCGCAGTGGAACAACCATCAAGCCAACAACAGCCGAGGAGGACGGC GACACGGCGCCAGATCCGGTCTATCTGTTGACACATAACAGCACCGAAGAGAAGCAGCTGTGGTCGCGGTTCAAG GAAATGGCGAAGAGGGGTAACATGGAGCCGCGGGTAGTGGCAGGCGACTGGTTGTTGGATGTGTGCATGGCACAA GAGGTGCGGTTTAGTGAAAAGTTTTTGGCGGAGAATTGGTACGTGTCTGAAGGTGGTAAATGA |
| Gene | >OphauB2|495 ATGGCAGACGAACTTGGCAGCAGTAGTGTCTTCAGTGAGTGCGTTGTTGCCTTTGTGCCGAGCAGCACGCTGGCA CCTAAACACATTAGCGAGGTTTGTCCTCTCTGTATCATGGTCCTTGACAAGGCTTGTCAGCTGACCCAAGACTAC AGTTAGCCAAAGTGGTTGAAGATAATGGAGCGACAATTTGCGAGCCTCGACGTGATGGAACGATAGCCATGGGCA AGGTGACGCACATTGTTTCCAATACAATTGACTTTGCGCAATATGTCGAGTCTCAGGCTGTCATGATACCTGTCG TGTCGACACAATGGATCACTGCTTCGATATCACGGCGGCGGCAGGCCCAAGTGCGACCATTTTCACCCGACCCGC GCATGATTTTTGCCGAAGTGGTGGTGACATGTGGTGATGTGCCCGTCATGGATAAGGAGGGAATTCTCGGTGCCA CCATGGCATTGGGTGGCCAAGAGTCAAAGGACGTGAATCGCCTAACGACGCATGTGTGTTCCTTGTCCATGGACC ACCCAAAGGTGCAGATGGCTTTGAAGATGATGGAGCAAAAGGGCTGGAAGGGCAAGATTGTCTTGCCACACTGGT GAGCCCATTATTGATCGAGAAGAAGAGCAGCCGGCCGAAGCCATATGCTGACTTTTTGTCGCCAGGTTCGATGCT TGCTTCAAGCTCGGCAAACGAATCGATGAAGGCCCGTACCTCCTTCCAAACCCTAAAGTATTCAGCCTCGATCCT GCCGATGAACTCGAGATTCCTAAAACCCCCTCTCTTGAGGGCGCCACTTCAGCCAATCCACAGTGGCTACCGGTG CCCCCAGATATCAAGTCCGGCCGTCCCCCTGTCACCGTGTTTCGTGACCGAAAAGTCTTCCTGTCCTCTGATCTG GGAATTACGTCCCGTCTTGTCAAGGTATTGGCTGACTTGATTAAAAATGGCGGCGGGAAATGGGTCGACGACGTC GACGACTGCGACATGTTCATCTGCCAGTACCGCGACGGGTCTCAGTACGTCAAGGCTGCCCAATCATGCAAAGAA ATTGGTAGCCTCTCATGGCTTTTTTACCTTGTTGTTCACAACCAGTGGCGCAACCCTCTGCACCGCTTGTTGCAT TATCCAATACCTAGGAAAGGAATTGAAGGGTTCGAGAATCTGCGCATAACCGTCTCCAACTACGGCGGCGAGGCG CGTACTTACCTCGAGAACCTCATCAGAGCCTGTGGCGCCGAATACACCAAGACAATGAGACCGGAAAACACGCAC CTCGTGACGGCCCGCGATACGAGTGACAAGTGCAAGGCGGCTCCCGAATGGGGCGTCGCGGTCATCAACCACCTC TGGCTCGAGGAAAGCTATGCCAAGTGTGAGAAGAAGCAGATCAATCTTGCAAAGTATAACCATTTCCCCCCACGC ACCAACCTTGGCGAAATTATTGGTCAAACTTTTTTGGACGAATCGTGTCTGCGAGAAATTTATTATCCTGGGGGC GAAGATTCCATGTCGCCCAGGGCAAAGAGGAAACGCAAGATTCTCGAGGCCGCCGAAGACAATGCGTACCATCAA GGACCTGCCGAGGGTGTCGTCATAGGGCGGTCGCACGAGCAAAAAAGTGCAAATGTCTTTCAGGCCGAGTCGAAT CGCAGCAGTGTCGAGACGGAAAATGCCAAGATGGCATCGGTGCGGACACCCAGACGGCCCCAGCCGGGCAAGGAA AACAGCAGCCCATCGATAGTGTCAGTGGGCAGTCGCAGTGCCAAGGCCAAGGCCAAAGACCTCCTACAGACGATT GCGCCCGATATCGCCCTGTACGAAAAGGAAAAGAAGAGACATACCAAGGCGGGTGTTCCTTGGGGAGGAAAACGG GCTGCGGATAACGCCGAGAAGCAGACCAAGGCCAAGGTGACGGCAGCCAAGGCTTTACAAGAGGCGGAAGATGAA GCTTCTGCAACGCCTGTGAGACCTGCCAAAAAGGCACGACCCTCGCTCCCAGAAATTGAAATGCGCATTGCCATT ACCTCCTATGACAAATGGACAGACGACAGTAATCAGGAGGATCGCGACAGGGTGAGTCAATTTACTTTTTTCTTC GAGAGTTTGTGCTTGGTAACGATTGCTAATTACTGCTTTTTAGTTACGGTTACGCAATTTGGGTATACAGGTTGT CCAGCACCCTCCTTGCGACTACATTGTTGCGCCGCGCATTGTGCGCACCGTCAAGTTTCTCTGCTCTCTAGCATG GGGTGCGCGCGTTCTTTCCGTCGACTTCATTGACGAGGTTCTCAAAAAGGGCGATATTCCAATACCAGAGGAATA CGCCTTGAATGATCAAGAGGGTGAATCAAGGAACAACTTTCGCATCGCAAAGTCAGTGGCGAGGGCCAAGGCCCA CAAGGGAAGACTGTTGCAGGGAATCCCGATATACTGCACTGAGAAAATCAAGGGGGGTTGGGAGAGTTACCAGTC CATTTCCCAGGCCAATGGCGCCATTTTCAAGGTGTACCGGGCGCGCAGTGGAACAACCATCAAGCCAACAACAGC CGAGGAGGACGGCGACACGGCGCCAGATCCGGTCTATCTGTTGACACATAACAGCACCGAAGAGAAGCAGCTGTG GTCGCGGTTCAAGGAAATGGCGAAGAGGGGTAACATGGAGCCGCGGGTAGTGGCAGGCGACTGGTTGTTGGATGT GTGCATGGCACAAGAGGTGCGGTTTAGTGAAAAGTTTTTGGCGGAGAATTGGTACGTGTCTGAAGGTGGTAAATG A |