Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|495
Gene name
LocationContig_108:38020..40796
Strand+
Gene length (bp)2776
Transcript length (bp)2463
Coding sequence length (bp)2463
Protein length (aa) 821

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF16770 RTT107_BRCT_5 Regulator of Ty1 transposition protein 107 BRCT domain 1.1E-25 575 673
PF12738 PTCB-BRCT twin BRCT domain 4.3E-19 307 369
PF00533 BRCT BRCA1 C Terminus (BRCT) domain 4.4E-06 8 90
PF00533 BRCT BRCA1 C Terminus (BRCT) domain 7.6E-09 304 373

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q10337|BRC1_SCHPO BRCT-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brc1 PE=1 SV=1 15 391 3.0E-26
sp|Q10337|BRC1_SCHPO BRCT-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brc1 PE=1 SV=1 505 811 1.0E-20
sp|P38850|RT107_YEAST Regulator of Ty1 transposition protein 107 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTT107 PE=1 SV=1 307 410 9.0E-10
sp|Q5TM68|MDC1_MACMU Mediator of DNA damage checkpoint protein 1 OS=Macaca mulatta GN=MDC1 PE=3 SV=1 628 713 4.0E-09
sp|Q14676|MDC1_HUMAN Mediator of DNA damage checkpoint protein 1 OS=Homo sapiens GN=MDC1 PE=1 SV=3 628 713 4.0E-09
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q10337|BRC1_SCHPO BRCT-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brc1 PE=1 SV=1 15 391 3.0E-26
sp|Q10337|BRC1_SCHPO BRCT-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brc1 PE=1 SV=1 505 811 1.0E-20
sp|P38850|RT107_YEAST Regulator of Ty1 transposition protein 107 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTT107 PE=1 SV=1 307 410 9.0E-10
sp|Q5TM68|MDC1_MACMU Mediator of DNA damage checkpoint protein 1 OS=Macaca mulatta GN=MDC1 PE=3 SV=1 628 713 4.0E-09
sp|Q14676|MDC1_HUMAN Mediator of DNA damage checkpoint protein 1 OS=Homo sapiens GN=MDC1 PE=1 SV=3 628 713 4.0E-09
sp|Q7YR40|MDC1_PANTR Mediator of DNA damage checkpoint protein 1 OS=Pan troglodytes GN=MDC1 PE=3 SV=1 628 713 5.0E-09
sp|Q767L8|MDC1_PIG Mediator of DNA damage checkpoint protein 1 OS=Sus scrofa GN=MDC1 PE=3 SV=1 628 713 2.0E-08
sp|Q5PSV9|MDC1_MOUSE Mediator of DNA damage checkpoint protein 1 OS=Mus musculus GN=Mdc1 PE=1 SV=1 628 730 1.0E-06
sp|Q5U2M8|MDC1_RAT Mediator of DNA damage checkpoint protein 1 OS=Rattus norvegicus GN=Mdc1 PE=1 SV=2 628 713 3.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|495
MADELGSSSVFSECVVAFVPSSTLAPKHISELAKVVEDNGATICEPRRDGTIAMGKVTHIVSNTIDFAQYVESQA
VMIPVVSTQWITASISRRRQAQVRPFSPDPRMIFAEVVVTCGDVPVMDKEGILGATMALGGQESKDVNRLTTHVC
SLSMDHPKVQMALKMMEQKGWKGKIVLPHWFDACFKLGKRIDEGPYLLPNPKVFSLDPADELEIPKTPSLEGATS
ANPQWLPVPPDIKSGRPPVTVFRDRKVFLSSDLGITSRLVKVLADLIKNGGGKWVDDVDDCDMFICQYRDGSQKG
IEGFENLRITVSNYGGEARTYLENLIRACGAEYTKTMRPENTHLVTARDTSDKCKAAPEWGVAVINHLWLEESYA
KCEKKQINLAKYNHFPPRTNLGEIIGQTFLDESCLREIYYPGGEDSMSPRAKRKRKILEAAEDNAYHQGPAEGVV
IGRSHEQKSANVFQAESNRSSVETENAKMASVRTPRRPQPGKENSSPSIVSVGSRSAKAKAKDLLQTIAPDIALY
EKEKKRHTKAGVPWGGKRAADNAEKQTKAKVTAAKALQEAEDEASATPVRPAKKARPSLPEIEMRIAITSYDKWT
DDSNQEDRDRLRLRNLGIQVVQHPPCDYIVAPRIVRTVKFLCSLAWGARVLSVDFIDEVLKKGDIPIPEEYALND
QEGESRNNFRIAKSVARAKAHKGRLLQGIPIYCTEKIKGGWESYQSISQANGAIFKVYRARSGTTIKPTTAEEDG
DTAPDPVYLLTHNSTEEKQLWSRFKEMAKRGNMEPRVVAGDWLLDVCMAQEVRFSEKFLAENWYVSEGGK*
Coding >OphauB2|495
ATGGCAGACGAACTTGGCAGCAGTAGTGTCTTCAGTGAGTGCGTTGTTGCCTTTGTGCCGAGCAGCACGCTGGCA
CCTAAACACATTAGCGAGTTAGCCAAAGTGGTTGAAGATAATGGAGCGACAATTTGCGAGCCTCGACGTGATGGA
ACGATAGCCATGGGCAAGGTGACGCACATTGTTTCCAATACAATTGACTTTGCGCAATATGTCGAGTCTCAGGCT
GTCATGATACCTGTCGTGTCGACACAATGGATCACTGCTTCGATATCACGGCGGCGGCAGGCCCAAGTGCGACCA
TTTTCACCCGACCCGCGCATGATTTTTGCCGAAGTGGTGGTGACATGTGGTGATGTGCCCGTCATGGATAAGGAG
GGAATTCTCGGTGCCACCATGGCATTGGGTGGCCAAGAGTCAAAGGACGTGAATCGCCTAACGACGCATGTGTGT
TCCTTGTCCATGGACCACCCAAAGGTGCAGATGGCTTTGAAGATGATGGAGCAAAAGGGCTGGAAGGGCAAGATT
GTCTTGCCACACTGGTTCGATGCTTGCTTCAAGCTCGGCAAACGAATCGATGAAGGCCCGTACCTCCTTCCAAAC
CCTAAAGTATTCAGCCTCGATCCTGCCGATGAACTCGAGATTCCTAAAACCCCCTCTCTTGAGGGCGCCACTTCA
GCCAATCCACAGTGGCTACCGGTGCCCCCAGATATCAAGTCCGGCCGTCCCCCTGTCACCGTGTTTCGTGACCGA
AAAGTCTTCCTGTCCTCTGATCTGGGAATTACGTCCCGTCTTGTCAAGGTATTGGCTGACTTGATTAAAAATGGC
GGCGGGAAATGGGTCGACGACGTCGACGACTGCGACATGTTCATCTGCCAGTACCGCGACGGGTCTCAGAAAGGA
ATTGAAGGGTTCGAGAATCTGCGCATAACCGTCTCCAACTACGGCGGCGAGGCGCGTACTTACCTCGAGAACCTC
ATCAGAGCCTGTGGCGCCGAATACACCAAGACAATGAGACCGGAAAACACGCACCTCGTGACGGCCCGCGATACG
AGTGACAAGTGCAAGGCGGCTCCCGAATGGGGCGTCGCGGTCATCAACCACCTCTGGCTCGAGGAAAGCTATGCC
AAGTGTGAGAAGAAGCAGATCAATCTTGCAAAGTATAACCATTTCCCCCCACGCACCAACCTTGGCGAAATTATT
GGTCAAACTTTTTTGGACGAATCGTGTCTGCGAGAAATTTATTATCCTGGGGGCGAAGATTCCATGTCGCCCAGG
GCAAAGAGGAAACGCAAGATTCTCGAGGCCGCCGAAGACAATGCGTACCATCAAGGACCTGCCGAGGGTGTCGTC
ATAGGGCGGTCGCACGAGCAAAAAAGTGCAAATGTCTTTCAGGCCGAGTCGAATCGCAGCAGTGTCGAGACGGAA
AATGCCAAGATGGCATCGGTGCGGACACCCAGACGGCCCCAGCCGGGCAAGGAAAACAGCAGCCCATCGATAGTG
TCAGTGGGCAGTCGCAGTGCCAAGGCCAAGGCCAAAGACCTCCTACAGACGATTGCGCCCGATATCGCCCTGTAC
GAAAAGGAAAAGAAGAGACATACCAAGGCGGGTGTTCCTTGGGGAGGAAAACGGGCTGCGGATAACGCCGAGAAG
CAGACCAAGGCCAAGGTGACGGCAGCCAAGGCTTTACAAGAGGCGGAAGATGAAGCTTCTGCAACGCCTGTGAGA
CCTGCCAAAAAGGCACGACCCTCGCTCCCAGAAATTGAAATGCGCATTGCCATTACCTCCTATGACAAATGGACA
GACGACAGTAATCAGGAGGATCGCGACAGGTTACGGTTACGCAATTTGGGTATACAGGTTGTCCAGCACCCTCCT
TGCGACTACATTGTTGCGCCGCGCATTGTGCGCACCGTCAAGTTTCTCTGCTCTCTAGCATGGGGTGCGCGCGTT
CTTTCCGTCGACTTCATTGACGAGGTTCTCAAAAAGGGCGATATTCCAATACCAGAGGAATACGCCTTGAATGAT
CAAGAGGGTGAATCAAGGAACAACTTTCGCATCGCAAAGTCAGTGGCGAGGGCCAAGGCCCACAAGGGAAGACTG
TTGCAGGGAATCCCGATATACTGCACTGAGAAAATCAAGGGGGGTTGGGAGAGTTACCAGTCCATTTCCCAGGCC
AATGGCGCCATTTTCAAGGTGTACCGGGCGCGCAGTGGAACAACCATCAAGCCAACAACAGCCGAGGAGGACGGC
GACACGGCGCCAGATCCGGTCTATCTGTTGACACATAACAGCACCGAAGAGAAGCAGCTGTGGTCGCGGTTCAAG
GAAATGGCGAAGAGGGGTAACATGGAGCCGCGGGTAGTGGCAGGCGACTGGTTGTTGGATGTGTGCATGGCACAA
GAGGTGCGGTTTAGTGAAAAGTTTTTGGCGGAGAATTGGTACGTGTCTGAAGGTGGTAAATGA
Transcript >OphauB2|495
ATGGCAGACGAACTTGGCAGCAGTAGTGTCTTCAGTGAGTGCGTTGTTGCCTTTGTGCCGAGCAGCACGCTGGCA
CCTAAACACATTAGCGAGTTAGCCAAAGTGGTTGAAGATAATGGAGCGACAATTTGCGAGCCTCGACGTGATGGA
ACGATAGCCATGGGCAAGGTGACGCACATTGTTTCCAATACAATTGACTTTGCGCAATATGTCGAGTCTCAGGCT
GTCATGATACCTGTCGTGTCGACACAATGGATCACTGCTTCGATATCACGGCGGCGGCAGGCCCAAGTGCGACCA
TTTTCACCCGACCCGCGCATGATTTTTGCCGAAGTGGTGGTGACATGTGGTGATGTGCCCGTCATGGATAAGGAG
GGAATTCTCGGTGCCACCATGGCATTGGGTGGCCAAGAGTCAAAGGACGTGAATCGCCTAACGACGCATGTGTGT
TCCTTGTCCATGGACCACCCAAAGGTGCAGATGGCTTTGAAGATGATGGAGCAAAAGGGCTGGAAGGGCAAGATT
GTCTTGCCACACTGGTTCGATGCTTGCTTCAAGCTCGGCAAACGAATCGATGAAGGCCCGTACCTCCTTCCAAAC
CCTAAAGTATTCAGCCTCGATCCTGCCGATGAACTCGAGATTCCTAAAACCCCCTCTCTTGAGGGCGCCACTTCA
GCCAATCCACAGTGGCTACCGGTGCCCCCAGATATCAAGTCCGGCCGTCCCCCTGTCACCGTGTTTCGTGACCGA
AAAGTCTTCCTGTCCTCTGATCTGGGAATTACGTCCCGTCTTGTCAAGGTATTGGCTGACTTGATTAAAAATGGC
GGCGGGAAATGGGTCGACGACGTCGACGACTGCGACATGTTCATCTGCCAGTACCGCGACGGGTCTCAGAAAGGA
ATTGAAGGGTTCGAGAATCTGCGCATAACCGTCTCCAACTACGGCGGCGAGGCGCGTACTTACCTCGAGAACCTC
ATCAGAGCCTGTGGCGCCGAATACACCAAGACAATGAGACCGGAAAACACGCACCTCGTGACGGCCCGCGATACG
AGTGACAAGTGCAAGGCGGCTCCCGAATGGGGCGTCGCGGTCATCAACCACCTCTGGCTCGAGGAAAGCTATGCC
AAGTGTGAGAAGAAGCAGATCAATCTTGCAAAGTATAACCATTTCCCCCCACGCACCAACCTTGGCGAAATTATT
GGTCAAACTTTTTTGGACGAATCGTGTCTGCGAGAAATTTATTATCCTGGGGGCGAAGATTCCATGTCGCCCAGG
GCAAAGAGGAAACGCAAGATTCTCGAGGCCGCCGAAGACAATGCGTACCATCAAGGACCTGCCGAGGGTGTCGTC
ATAGGGCGGTCGCACGAGCAAAAAAGTGCAAATGTCTTTCAGGCCGAGTCGAATCGCAGCAGTGTCGAGACGGAA
AATGCCAAGATGGCATCGGTGCGGACACCCAGACGGCCCCAGCCGGGCAAGGAAAACAGCAGCCCATCGATAGTG
TCAGTGGGCAGTCGCAGTGCCAAGGCCAAGGCCAAAGACCTCCTACAGACGATTGCGCCCGATATCGCCCTGTAC
GAAAAGGAAAAGAAGAGACATACCAAGGCGGGTGTTCCTTGGGGAGGAAAACGGGCTGCGGATAACGCCGAGAAG
CAGACCAAGGCCAAGGTGACGGCAGCCAAGGCTTTACAAGAGGCGGAAGATGAAGCTTCTGCAACGCCTGTGAGA
CCTGCCAAAAAGGCACGACCCTCGCTCCCAGAAATTGAAATGCGCATTGCCATTACCTCCTATGACAAATGGACA
GACGACAGTAATCAGGAGGATCGCGACAGGTTACGGTTACGCAATTTGGGTATACAGGTTGTCCAGCACCCTCCT
TGCGACTACATTGTTGCGCCGCGCATTGTGCGCACCGTCAAGTTTCTCTGCTCTCTAGCATGGGGTGCGCGCGTT
CTTTCCGTCGACTTCATTGACGAGGTTCTCAAAAAGGGCGATATTCCAATACCAGAGGAATACGCCTTGAATGAT
CAAGAGGGTGAATCAAGGAACAACTTTCGCATCGCAAAGTCAGTGGCGAGGGCCAAGGCCCACAAGGGAAGACTG
TTGCAGGGAATCCCGATATACTGCACTGAGAAAATCAAGGGGGGTTGGGAGAGTTACCAGTCCATTTCCCAGGCC
AATGGCGCCATTTTCAAGGTGTACCGGGCGCGCAGTGGAACAACCATCAAGCCAACAACAGCCGAGGAGGACGGC
GACACGGCGCCAGATCCGGTCTATCTGTTGACACATAACAGCACCGAAGAGAAGCAGCTGTGGTCGCGGTTCAAG
GAAATGGCGAAGAGGGGTAACATGGAGCCGCGGGTAGTGGCAGGCGACTGGTTGTTGGATGTGTGCATGGCACAA
GAGGTGCGGTTTAGTGAAAAGTTTTTGGCGGAGAATTGGTACGTGTCTGAAGGTGGTAAATGA
Gene >OphauB2|495
ATGGCAGACGAACTTGGCAGCAGTAGTGTCTTCAGTGAGTGCGTTGTTGCCTTTGTGCCGAGCAGCACGCTGGCA
CCTAAACACATTAGCGAGGTTTGTCCTCTCTGTATCATGGTCCTTGACAAGGCTTGTCAGCTGACCCAAGACTAC
AGTTAGCCAAAGTGGTTGAAGATAATGGAGCGACAATTTGCGAGCCTCGACGTGATGGAACGATAGCCATGGGCA
AGGTGACGCACATTGTTTCCAATACAATTGACTTTGCGCAATATGTCGAGTCTCAGGCTGTCATGATACCTGTCG
TGTCGACACAATGGATCACTGCTTCGATATCACGGCGGCGGCAGGCCCAAGTGCGACCATTTTCACCCGACCCGC
GCATGATTTTTGCCGAAGTGGTGGTGACATGTGGTGATGTGCCCGTCATGGATAAGGAGGGAATTCTCGGTGCCA
CCATGGCATTGGGTGGCCAAGAGTCAAAGGACGTGAATCGCCTAACGACGCATGTGTGTTCCTTGTCCATGGACC
ACCCAAAGGTGCAGATGGCTTTGAAGATGATGGAGCAAAAGGGCTGGAAGGGCAAGATTGTCTTGCCACACTGGT
GAGCCCATTATTGATCGAGAAGAAGAGCAGCCGGCCGAAGCCATATGCTGACTTTTTGTCGCCAGGTTCGATGCT
TGCTTCAAGCTCGGCAAACGAATCGATGAAGGCCCGTACCTCCTTCCAAACCCTAAAGTATTCAGCCTCGATCCT
GCCGATGAACTCGAGATTCCTAAAACCCCCTCTCTTGAGGGCGCCACTTCAGCCAATCCACAGTGGCTACCGGTG
CCCCCAGATATCAAGTCCGGCCGTCCCCCTGTCACCGTGTTTCGTGACCGAAAAGTCTTCCTGTCCTCTGATCTG
GGAATTACGTCCCGTCTTGTCAAGGTATTGGCTGACTTGATTAAAAATGGCGGCGGGAAATGGGTCGACGACGTC
GACGACTGCGACATGTTCATCTGCCAGTACCGCGACGGGTCTCAGTACGTCAAGGCTGCCCAATCATGCAAAGAA
ATTGGTAGCCTCTCATGGCTTTTTTACCTTGTTGTTCACAACCAGTGGCGCAACCCTCTGCACCGCTTGTTGCAT
TATCCAATACCTAGGAAAGGAATTGAAGGGTTCGAGAATCTGCGCATAACCGTCTCCAACTACGGCGGCGAGGCG
CGTACTTACCTCGAGAACCTCATCAGAGCCTGTGGCGCCGAATACACCAAGACAATGAGACCGGAAAACACGCAC
CTCGTGACGGCCCGCGATACGAGTGACAAGTGCAAGGCGGCTCCCGAATGGGGCGTCGCGGTCATCAACCACCTC
TGGCTCGAGGAAAGCTATGCCAAGTGTGAGAAGAAGCAGATCAATCTTGCAAAGTATAACCATTTCCCCCCACGC
ACCAACCTTGGCGAAATTATTGGTCAAACTTTTTTGGACGAATCGTGTCTGCGAGAAATTTATTATCCTGGGGGC
GAAGATTCCATGTCGCCCAGGGCAAAGAGGAAACGCAAGATTCTCGAGGCCGCCGAAGACAATGCGTACCATCAA
GGACCTGCCGAGGGTGTCGTCATAGGGCGGTCGCACGAGCAAAAAAGTGCAAATGTCTTTCAGGCCGAGTCGAAT
CGCAGCAGTGTCGAGACGGAAAATGCCAAGATGGCATCGGTGCGGACACCCAGACGGCCCCAGCCGGGCAAGGAA
AACAGCAGCCCATCGATAGTGTCAGTGGGCAGTCGCAGTGCCAAGGCCAAGGCCAAAGACCTCCTACAGACGATT
GCGCCCGATATCGCCCTGTACGAAAAGGAAAAGAAGAGACATACCAAGGCGGGTGTTCCTTGGGGAGGAAAACGG
GCTGCGGATAACGCCGAGAAGCAGACCAAGGCCAAGGTGACGGCAGCCAAGGCTTTACAAGAGGCGGAAGATGAA
GCTTCTGCAACGCCTGTGAGACCTGCCAAAAAGGCACGACCCTCGCTCCCAGAAATTGAAATGCGCATTGCCATT
ACCTCCTATGACAAATGGACAGACGACAGTAATCAGGAGGATCGCGACAGGGTGAGTCAATTTACTTTTTTCTTC
GAGAGTTTGTGCTTGGTAACGATTGCTAATTACTGCTTTTTAGTTACGGTTACGCAATTTGGGTATACAGGTTGT
CCAGCACCCTCCTTGCGACTACATTGTTGCGCCGCGCATTGTGCGCACCGTCAAGTTTCTCTGCTCTCTAGCATG
GGGTGCGCGCGTTCTTTCCGTCGACTTCATTGACGAGGTTCTCAAAAAGGGCGATATTCCAATACCAGAGGAATA
CGCCTTGAATGATCAAGAGGGTGAATCAAGGAACAACTTTCGCATCGCAAAGTCAGTGGCGAGGGCCAAGGCCCA
CAAGGGAAGACTGTTGCAGGGAATCCCGATATACTGCACTGAGAAAATCAAGGGGGGTTGGGAGAGTTACCAGTC
CATTTCCCAGGCCAATGGCGCCATTTTCAAGGTGTACCGGGCGCGCAGTGGAACAACCATCAAGCCAACAACAGC
CGAGGAGGACGGCGACACGGCGCCAGATCCGGTCTATCTGTTGACACATAACAGCACCGAAGAGAAGCAGCTGTG
GTCGCGGTTCAAGGAAATGGCGAAGAGGGGTAACATGGAGCCGCGGGTAGTGGCAGGCGACTGGTTGTTGGATGT
GTGCATGGCACAAGAGGTGCGGTTTAGTGAAAAGTTTTTGGCGGAGAATTGGTACGTGTCTGAAGGTGGTAAATG
A

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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