© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|4927 |
| Gene name | |
| Location | Contig_35:88800..90844 |
| Strand | - |
| Gene length (bp) | 2044 |
| Transcript length (bp) | 1776 |
| Coding sequence length (bp) | 1776 |
| Protein length (aa) | 592 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00046 | Homeodomain | Homeodomain | 2.3E-13 | 52 | 107 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4LAL6|ALX4_BOVIN | Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1 | 35 | 110 | 7.0E-08 |
| sp|Q9H161|ALX4_HUMAN | Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1 SV=2 | 37 | 110 | 2.0E-07 |
| sp|O35137|ALX4_MOUSE | Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1 SV=1 | 35 | 110 | 3.0E-07 |
| sp|P31316|GSX2_MOUSE | GS homeobox 2 OS=Mus musculus GN=Gsx2 PE=1 SV=2 | 11 | 124 | 5.0E-07 |
| sp|Q9BZM3|GSX2_HUMAN | GS homeobox 2 OS=Homo sapiens GN=GSX2 PE=2 SV=2 | 45 | 124 | 1.0E-06 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4LAL6|ALX4_BOVIN | Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1 | 35 | 110 | 7.0E-08 |
| sp|Q9H161|ALX4_HUMAN | Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1 SV=2 | 37 | 110 | 2.0E-07 |
| sp|O35137|ALX4_MOUSE | Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1 SV=1 | 35 | 110 | 3.0E-07 |
| sp|P31316|GSX2_MOUSE | GS homeobox 2 OS=Mus musculus GN=Gsx2 PE=1 SV=2 | 11 | 124 | 5.0E-07 |
| sp|Q9BZM3|GSX2_HUMAN | GS homeobox 2 OS=Homo sapiens GN=GSX2 PE=2 SV=2 | 45 | 124 | 1.0E-06 |
| sp|P21711|MIX1_XENLA | Homeobox protein Mix.1 OS=Xenopus laevis GN=mix-a PE=2 SV=2 | 53 | 181 | 1.0E-06 |
| sp|P34161|YOX1_YEAST | Homeobox protein YOX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOX1 PE=1 SV=2 | 53 | 108 | 2.0E-06 |
| sp|Q91685|MIX2_XENLA | Homeobox protein Mix.2 OS=Xenopus laevis GN=mix-b PE=2 SV=1 | 53 | 181 | 3.0E-06 |
| sp|Q566X8|DMX1B_DANRE | Diencephalon/mesencephalon homeobox protein 1-B OS=Danio rerio GN=dmbx1b PE=2 SV=1 | 48 | 124 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003677 | DNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Homeodomain |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|4927 MSTADALARLAPLCASQRVRTHDGTLTRFSQMDQAALGSPMHSLDSEKHPKGKRKRTGARDKSILEEAYQSNTKP DKQARLDIVARVTLTEKEVQIWFQNRRQNDRRKSRPLSQEELAALRITGGNPFEPLVGMPDVDRAMFTSDRAESQ ASNRAPMSPLPSNEKAQEQASLDALDTTSNTQDGVVATAEKRPVSQQSNAVVQAEASPANSLERFSLQALERGSC DSMSPCFPGSVGYLANRWNIGSAFCTRYSDKGSLGGIVHEPKVPFVACSATEAAPAPSGPGANVRLSLSLDGKAA IISGKNSVEQQQGPPRPASTLASGPQTRRAGFQRSHSALPYVTLPPISTVTSLLPPRLARGRSRDVHAWESCAGS EKRDGLTAQAELESNGSAIAAISLLRSSSGVLQPNTAKRNAPVAKVEQSKKAKFGRTSSTYARMETVAAEPAKKY SKVKVSSMLASPTDSDKENWSPDAAGNPQRRHRQQQVPDSPLSKPRASRRSHRPLGENKAWAALGSRSNTSPMPS GSRASGADDDDDDDGRHDIVIFEDASSSEHPCDEVERFMRGDVSPSKKGDLDCVAGLLSLSQGAWR* |
| Coding | >OphauB2|4927 ATGTCGACGGCGGATGCATTGGCCCGGCTGGCTCCTCTCTGCGCATCACAGCGCGTCAGGACTCATGATGGCACC TTGACCAGGTTCTCGCAAATGGACCAGGCGGCGTTGGGCAGCCCAATGCATTCGCTGGATAGCGAAAAGCACCCC AAGGGCAAGAGGAAGCGCACAGGGGCAAGGGACAAGTCGATTCTCGAGGAAGCCTACCAGAGCAATACAAAGCCC GACAAGCAGGCGCGTCTCGACATTGTCGCTCGCGTCACGCTTACCGAGAAGGAAGTGCAGATTTGGTTCCAGAAC CGTCGACAAAACGACCGTCGAAAGTCGCGTCCCTTGTCGCAAGAGGAACTCGCTGCCCTGCGCATCACGGGCGGG AACCCGTTTGAGCCGCTGGTGGGCATGCCCGATGTCGACCGGGCCATGTTCACGTCGGACAGAGCCGAGTCTCAA GCCTCGAACCGCGCTCCCATGTCGCCGCTGCCCAGCAACGAAAAGGCTCAGGAACAGGCATCGCTTGATGCCCTT GATACTACTAGTAATACACAGGATGGGGTGGTGGCAACAGCAGAAAAGAGACCAGTAAGCCAGCAGAGTAATGCC GTGGTGCAGGCCGAGGCGTCGCCGGCGAATAGCCTGGAACGGTTTTCGCTGCAGGCGTTGGAGAGAGGTTCTTGC GATTCCATGTCGCCCTGCTTCCCAGGCTCGGTGGGATATCTTGCCAATAGATGGAATATTGGAAGCGCCTTTTGC ACACGGTATAGCGACAAAGGCAGCCTGGGCGGCATTGTACACGAGCCCAAGGTGCCTTTTGTTGCATGCTCTGCT ACAGAGGCGGCTCCCGCCCCGAGCGGGCCCGGAGCCAACGTGAGGCTGTCCCTGTCGCTGGACGGCAAGGCTGCC ATAATATCTGGCAAAAACTCGGTGGAGCAACAACAAGGACCGCCGCGGCCAGCGTCCACCTTGGCCAGCGGACCG CAAACTCGGCGGGCGGGCTTCCAGCGCAGCCACAGCGCCCTCCCCTATGTGACTCTGCCACCAATTTCTACAGTG ACGAGCCTGCTGCCGCCGCGGCTGGCACGGGGCCGATCGCGCGACGTTCACGCCTGGGAGTCGTGCGCGGGGTCG GAGAAGCGTGACGGGCTGACGGCGCAGGCTGAGCTCGAGTCCAACGGATCAGCCATTGCAGCCATTAGCTTGCTG CGGTCGTCGTCGGGCGTCTTGCAGCCGAATACGGCCAAGCGCAACGCACCCGTGGCCAAGGTGGAGCAGAGTAAA AAGGCCAAGTTTGGGCGCACGAGCTCGACATATGCCCGCATGGAGACTGTGGCGGCCGAGCCGGCCAAGAAGTAC AGCAAGGTCAAGGTGTCGTCGATGCTGGCGTCGCCCACCGATTCGGATAAGGAGAATTGGAGCCCCGACGCCGCG GGCAATCCGCAGCGGCGCCACCGGCAGCAGCAAGTGCCCGACAGTCCGCTCTCGAAGCCGCGAGCGTCGCGACGC AGCCACCGTCCTCTAGGCGAGAACAAGGCGTGGGCAGCGCTGGGCAGCCGCAGCAACACGAGCCCCATGCCGAGC GGGAGCCGGGCCTCTGGGGCCGACGACGATGACGACGACGACGGCAGGCATGACATTGTGATTTTTGAGGACGCA TCGTCGTCGGAGCACCCGTGCGACGAGGTGGAGCGCTTCATGCGGGGAGACGTGAGCCCGAGCAAAAAGGGCGAC TTGGACTGCGTGGCGGGGCTGTTGTCCCTGAGTCAGGGGGCGTGGCGATGA |
| Transcript | >OphauB2|4927 ATGTCGACGGCGGATGCATTGGCCCGGCTGGCTCCTCTCTGCGCATCACAGCGCGTCAGGACTCATGATGGCACC TTGACCAGGTTCTCGCAAATGGACCAGGCGGCGTTGGGCAGCCCAATGCATTCGCTGGATAGCGAAAAGCACCCC AAGGGCAAGAGGAAGCGCACAGGGGCAAGGGACAAGTCGATTCTCGAGGAAGCCTACCAGAGCAATACAAAGCCC GACAAGCAGGCGCGTCTCGACATTGTCGCTCGCGTCACGCTTACCGAGAAGGAAGTGCAGATTTGGTTCCAGAAC CGTCGACAAAACGACCGTCGAAAGTCGCGTCCCTTGTCGCAAGAGGAACTCGCTGCCCTGCGCATCACGGGCGGG AACCCGTTTGAGCCGCTGGTGGGCATGCCCGATGTCGACCGGGCCATGTTCACGTCGGACAGAGCCGAGTCTCAA GCCTCGAACCGCGCTCCCATGTCGCCGCTGCCCAGCAACGAAAAGGCTCAGGAACAGGCATCGCTTGATGCCCTT GATACTACTAGTAATACACAGGATGGGGTGGTGGCAACAGCAGAAAAGAGACCAGTAAGCCAGCAGAGTAATGCC GTGGTGCAGGCCGAGGCGTCGCCGGCGAATAGCCTGGAACGGTTTTCGCTGCAGGCGTTGGAGAGAGGTTCTTGC GATTCCATGTCGCCCTGCTTCCCAGGCTCGGTGGGATATCTTGCCAATAGATGGAATATTGGAAGCGCCTTTTGC ACACGGTATAGCGACAAAGGCAGCCTGGGCGGCATTGTACACGAGCCCAAGGTGCCTTTTGTTGCATGCTCTGCT ACAGAGGCGGCTCCCGCCCCGAGCGGGCCCGGAGCCAACGTGAGGCTGTCCCTGTCGCTGGACGGCAAGGCTGCC ATAATATCTGGCAAAAACTCGGTGGAGCAACAACAAGGACCGCCGCGGCCAGCGTCCACCTTGGCCAGCGGACCG CAAACTCGGCGGGCGGGCTTCCAGCGCAGCCACAGCGCCCTCCCCTATGTGACTCTGCCACCAATTTCTACAGTG ACGAGCCTGCTGCCGCCGCGGCTGGCACGGGGCCGATCGCGCGACGTTCACGCCTGGGAGTCGTGCGCGGGGTCG GAGAAGCGTGACGGGCTGACGGCGCAGGCTGAGCTCGAGTCCAACGGATCAGCCATTGCAGCCATTAGCTTGCTG CGGTCGTCGTCGGGCGTCTTGCAGCCGAATACGGCCAAGCGCAACGCACCCGTGGCCAAGGTGGAGCAGAGTAAA AAGGCCAAGTTTGGGCGCACGAGCTCGACATATGCCCGCATGGAGACTGTGGCGGCCGAGCCGGCCAAGAAGTAC AGCAAGGTCAAGGTGTCGTCGATGCTGGCGTCGCCCACCGATTCGGATAAGGAGAATTGGAGCCCCGACGCCGCG GGCAATCCGCAGCGGCGCCACCGGCAGCAGCAAGTGCCCGACAGTCCGCTCTCGAAGCCGCGAGCGTCGCGACGC AGCCACCGTCCTCTAGGCGAGAACAAGGCGTGGGCAGCGCTGGGCAGCCGCAGCAACACGAGCCCCATGCCGAGC GGGAGCCGGGCCTCTGGGGCCGACGACGATGACGACGACGACGGCAGGCATGACATTGTGATTTTTGAGGACGCA TCGTCGTCGGAGCACCCGTGCGACGAGGTGGAGCGCTTCATGCGGGGAGACGTGAGCCCGAGCAAAAAGGGCGAC TTGGACTGCGTGGCGGGGCTGTTGTCCCTGAGTCAGGGGGCGTGGCGATGA |
| Gene | >OphauB2|4927 ATGTCGACGGCGGATGCATTGGCCCGGCTGGCTCCTCTCTGCGCATCACAGCGCGTCAGGACTCATGATGGCACC TTGACCAGGTTCTCGCAAATGGACCAGGCGGCGTTGGGCAGCCCAATGCATTCGCTGGATAGCGAAAAGCACCCC AAGGGCAAGAGGAAGCGCACAGGGTTGGTTTACTTGCTCCGGGGGGAGGCACAGGCATGTCGAGACTGACGCGAC TTTTGGGGGAAACATGCATAGGGCAAGGGACAAGTCGATTCTCGAGGAAGCCTACCAGAGCAATACAAAGCCCGA CAAGCAGGCGCGTCTCGACATTGTCGCTCGCGTCACGCTTACCGAGAAGGAAGTGCAGGTACGTTGGTTTCTCTC TTGTTTTTTTTTGTCTTCTTTTTTTTGTTAGATATATGATGCTATAAAAAAAAAAGTGGCTGCTACGCGTCGACT GCAACATTATACATGTTCTAACTTGCCCGCCCAGATTTGGTTCCAGAACCGTCGACAAAACGACCGTCGAAAGTC GCGTCCCTTGTCGCAAGAGGAACTCGCTGCCCTGCGCATCACGGGCGGGAACCCGTTTGAGCCGCTGGTGGGCAT GCCCGATGTCGACCGGGCCATGTTCACGTCGGACAGAGCCGAGTCTCAAGCCTCGAACCGCGCTCCCATGTCGCC GCTGCCCAGCAACGAAAAGGCTCAGGAACAGGCATCGCTTGATGCCCTTGATACTACTAGTAATACACAGGATGG GGTGGTGGCAACAGCAGAAAAGAGACCAGTAAGCCAGCAGAGTAATGCCGTGGTGCAGGCCGAGGCGTCGCCGGC GAATAGCCTGGAACGGTTTTCGCTGCAGGCGTTGGAGAGAGGTTCTTGCGATTCCATGTCGCCCTGCTTCCCAGG CTCGGTGGGATATCTTGCCAATAGATGGAATATTGGAAGCGCCTTTTGCACACGGTATAGCGACAAAGGCAGCCT GGGCGGCATTGTACAGTAAGCCCCTCTTCCTTGTTGAATGTAGACGTGAGTCTTGGGGACGCAATGCTCATGTCG TTTTTACAGCGAGCCCAAGGTGCCTTTTGTTGCATGCTCTGCTACAGAGGCGGCTCCCGCCCCGAGCGGGCCCGG AGCCAACGTGAGGCTGTCCCTGTCGCTGGACGGCAAGGCTGCCATAATATCTGGCAAAAACTCGGTGGAGCAACA ACAAGGACCGCCGCGGCCAGCGTCCACCTTGGCCAGCGGACCGCAAACTCGGCGGGCGGGCTTCCAGCGCAGCCA CAGCGCCCTCCCCTATGTGACTCTGCCACCAATTTCTACAGTGACGAGCCTGCTGCCGCCGCGGCTGGCACGGGG CCGATCGCGCGACGTTCACGCCTGGGAGTCGTGCGCGGGGTCGGAGAAGCGTGACGGGCTGACGGCGCAGGCTGA GCTCGAGTCCAACGGATCAGCCATTGCAGCCATTAGCTTGCTGCGGTCGTCGTCGGGCGTCTTGCAGCCGAATAC GGCCAAGCGCAACGCACCCGTGGCCAAGGTGGAGCAGAGTAAAAAGGCCAAGTTTGGGCGCACGAGCTCGACATA TGCCCGCATGGAGACTGTGGCGGCCGAGCCGGCCAAGAAGTACAGCAAGGTCAAGGTGTCGTCGATGCTGGCGTC GCCCACCGATTCGGATAAGGAGAATTGGAGCCCCGACGCCGCGGGCAATCCGCAGCGGCGCCACCGGCAGCAGCA AGTGCCCGACAGTCCGCTCTCGAAGCCGCGAGCGTCGCGACGCAGCCACCGTCCTCTAGGCGAGAACAAGGCGTG GGCAGCGCTGGGCAGCCGCAGCAACACGAGCCCCATGCCGAGCGGGAGCCGGGCCTCTGGGGCCGACGACGATGA CGACGACGACGGCAGGCATGACATTGTGATTTTTGAGGACGCATCGTCGTCGGAGCACCCGTGCGACGAGGTGGA GCGCTTCATGCGGGGAGACGTGAGCCCGAGCAAAAAGGGCGACTTGGACTGCGTGGCGGGGCTGTTGTCCCTGAG TCAGGGGGCGTGGCGATGA |