© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|487 |
| Gene name | |
| Location | Contig_108:15909..17471 |
| Strand | - |
| Gene length (bp) | 1562 |
| Transcript length (bp) | 1245 |
| Coding sequence length (bp) | 1245 |
| Protein length (aa) | 415 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00790 | VHS | VHS domain | 6.4E-23 | 7 | 141 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87308|LSB5_SCHPO | Protein lsb5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsb5 PE=3 SV=1 | 1 | 142 | 2.0E-28 |
| sp|P25369|LSB5_YEAST | LAS seventeen-binding protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSB5 PE=1 SV=3 | 2 | 325 | 2.0E-20 |
| sp|O60784|TOM1_HUMAN | Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2 | 2 | 364 | 6.0E-12 |
| sp|Q68FJ8|TM1L2_XENLA | TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1 | 2 | 316 | 7.0E-11 |
| sp|P87308|LSB5_SCHPO | Protein lsb5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsb5 PE=3 SV=1 | 212 | 313 | 1.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87308|LSB5_SCHPO | Protein lsb5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsb5 PE=3 SV=1 | 1 | 142 | 2.0E-28 |
| sp|P25369|LSB5_YEAST | LAS seventeen-binding protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSB5 PE=1 SV=3 | 2 | 325 | 2.0E-20 |
| sp|O60784|TOM1_HUMAN | Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2 | 2 | 364 | 6.0E-12 |
| sp|Q68FJ8|TM1L2_XENLA | TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1 | 2 | 316 | 7.0E-11 |
| sp|P87308|LSB5_SCHPO | Protein lsb5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsb5 PE=3 SV=1 | 212 | 313 | 1.0E-10 |
| sp|Q6ZVM7|TM1L2_HUMAN | TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1 | 2 | 316 | 6.0E-09 |
| sp|Q5SRX1|TM1L2_MOUSE | TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1 | 2 | 316 | 1.0E-08 |
| sp|Q4P5J4|HSE1_USTMA | Class E vacuolar protein-sorting machinery protein HSE1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=HSE1 PE=3 SV=1 | 1 | 120 | 3.0E-07 |
| sp|O12940|TOM1_CHICK | Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2 | 2 | 143 | 5.0E-07 |
| sp|A1CEK6|HSE1_ASPCL | Class E vacuolar protein-sorting machinery protein hse1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=hse1 PE=3 SV=1 | 13 | 187 | 2.0E-06 |
| sp|A2QW93|HSE1_ASPNC | Class E vacuolar protein-sorting machinery protein hse1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=hse1 PE=3 SV=1 | 13 | 190 | 5.0E-06 |
| sp|A1DFN5|HSE1_NEOFI | Class E vacuolar protein-sorting machinery protein hse1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hse1 PE=3 SV=1 | 13 | 190 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0035091 | phosphatidylinositol binding | Yes |
| GO:0043130 | ubiquitin binding | Yes |
| GO:0005515 | protein binding | No |
| GO:0003674 | molecular_function | No |
| GO:0005543 | phospholipid binding | No |
| GO:0005488 | binding | No |
| GO:0032182 | ubiquitin-like protein binding | No |
| GO:0008289 | lipid binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 49 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|487 MFAQKKPYSAVTVTIENLTSESYPEDDLSGIPDLVEVIKLQASGPGEAARAIRKKLKYGNVHRQLRALVLLDGLM QNAGSRFQRTFADEPLLERLRVCGTSNLSDAAVRRKCSELFRDWAQYASTPGLERIARLYRELPKKKVAVTQERS KVIQETENPFGDDEEEEAQQAAAAGPSQAPSSHTSSSSHPRFILSHGDMFRADKKKDKDRAKEKSKSKSKHRPFN LETEKEKMKSVIAEASIEYTSLMNSLQSINREQERISENPVAVRHFEACKQLRRRILRYIHHVESEQWLGSLLHA NDQLVHALMSFEQLDQSIDADSDSDDALAEQAHMYRMATLKNHAETGPPSSSGRLVPHLSGLSLKPKPPTARPNS VPNDYDDGDDDDDDDAENPFGDKNVVVDTPGQERDEPRW* |
| Coding | >OphauB2|487 ATGTTTGCTCAAAAAAAGCCCTACTCGGCTGTCACGGTCACCATTGAGAATCTCACGTCCGAGTCGTATCCCGAA GACGACCTCAGCGGAATCCCAGATCTGGTCGAGGTGATCAAACTGCAGGCATCGGGGCCAGGCGAGGCGGCGCGC GCCATACGCAAGAAGCTCAAGTATGGCAACGTTCATCGCCAGCTGCGAGCGCTGGTGCTCTTGGATGGCCTGATG CAAAACGCGGGCTCCCGCTTCCAGCGTACCTTTGCCGATGAGCCGCTGCTCGAGCGCCTGCGCGTTTGTGGCACC AGCAATCTCTCAGATGCAGCTGTGCGGCGTAAGTGCTCGGAGCTCTTCCGGGACTGGGCCCAGTATGCGTCAACA CCAGGACTGGAGCGCATTGCTCGTCTATATCGGGAACTTCCTAAAAAGAAGGTGGCCGTGACACAAGAACGATCC AAGGTGATTCAAGAGACGGAGAATCCGTTTGGCGACGACGAAGAAGAAGAAGCGCAACAAGCTGCTGCCGCCGGG CCCTCGCAGGCTCCATCCTCACACACCTCGTCGTCGTCGCATCCACGCTTCATTCTCTCCCACGGCGACATGTTC CGCGCCGACAAGAAGAAGGACAAGGATAGAGCAAAGGAAAAGAGCAAGAGCAAGAGCAAGCATCGGCCTTTTAAC CTCGAGACGGAAAAGGAAAAGATGAAATCAGTTATTGCCGAAGCGTCTATTGAATATACGAGCCTCATGAACTCG CTGCAGAGCATCAATCGCGAGCAAGAACGCATCTCTGAAAATCCAGTCGCGGTGCGCCACTTTGAAGCCTGCAAG CAGCTGCGAAGGCGAATTCTTCGATATATTCATCATGTTGAGAGCGAGCAGTGGCTTGGCAGTTTACTGCACGCC AACGACCAACTTGTCCATGCCCTCATGTCATTTGAGCAGCTCGACCAATCCATCGATGCAGATAGTGACTCGGAC GACGCGCTTGCTGAGCAGGCACACATGTATCGAATGGCTACTCTCAAGAATCATGCAGAGACGGGCCCTCCATCA AGTAGTGGCCGCCTGGTGCCCCATCTCTCGGGCCTGTCTCTGAAGCCGAAACCGCCAACCGCTCGACCCAATAGC GTACCTAATGACTATGACGACGGCGACGACGACGATGACGACGATGCAGAAAATCCCTTTGGCGACAAGAATGTA GTTGTCGACACACCGGGACAAGAGCGCGACGAGCCTCGGTGGTAA |
| Transcript | >OphauB2|487 ATGTTTGCTCAAAAAAAGCCCTACTCGGCTGTCACGGTCACCATTGAGAATCTCACGTCCGAGTCGTATCCCGAA GACGACCTCAGCGGAATCCCAGATCTGGTCGAGGTGATCAAACTGCAGGCATCGGGGCCAGGCGAGGCGGCGCGC GCCATACGCAAGAAGCTCAAGTATGGCAACGTTCATCGCCAGCTGCGAGCGCTGGTGCTCTTGGATGGCCTGATG CAAAACGCGGGCTCCCGCTTCCAGCGTACCTTTGCCGATGAGCCGCTGCTCGAGCGCCTGCGCGTTTGTGGCACC AGCAATCTCTCAGATGCAGCTGTGCGGCGTAAGTGCTCGGAGCTCTTCCGGGACTGGGCCCAGTATGCGTCAACA CCAGGACTGGAGCGCATTGCTCGTCTATATCGGGAACTTCCTAAAAAGAAGGTGGCCGTGACACAAGAACGATCC AAGGTGATTCAAGAGACGGAGAATCCGTTTGGCGACGACGAAGAAGAAGAAGCGCAACAAGCTGCTGCCGCCGGG CCCTCGCAGGCTCCATCCTCACACACCTCGTCGTCGTCGCATCCACGCTTCATTCTCTCCCACGGCGACATGTTC CGCGCCGACAAGAAGAAGGACAAGGATAGAGCAAAGGAAAAGAGCAAGAGCAAGAGCAAGCATCGGCCTTTTAAC CTCGAGACGGAAAAGGAAAAGATGAAATCAGTTATTGCCGAAGCGTCTATTGAATATACGAGCCTCATGAACTCG CTGCAGAGCATCAATCGCGAGCAAGAACGCATCTCTGAAAATCCAGTCGCGGTGCGCCACTTTGAAGCCTGCAAG CAGCTGCGAAGGCGAATTCTTCGATATATTCATCATGTTGAGAGCGAGCAGTGGCTTGGCAGTTTACTGCACGCC AACGACCAACTTGTCCATGCCCTCATGTCATTTGAGCAGCTCGACCAATCCATCGATGCAGATAGTGACTCGGAC GACGCGCTTGCTGAGCAGGCACACATGTATCGAATGGCTACTCTCAAGAATCATGCAGAGACGGGCCCTCCATCA AGTAGTGGCCGCCTGGTGCCCCATCTCTCGGGCCTGTCTCTGAAGCCGAAACCGCCAACCGCTCGACCCAATAGC GTACCTAATGACTATGACGACGGCGACGACGACGATGACGACGATGCAGAAAATCCCTTTGGCGACAAGAATGTA GTTGTCGACACACCGGGACAAGAGCGCGACGAGCCTCGGTGGTAA |
| Gene | >OphauB2|487 ATGTTTGCTCAAGTGCGATTATGTTCCCGTCTGGCGTACAAAAGCGCACGCCGTGGCTAATGTCAAGTATTGCTG TTTCCAGAAAAAGCCCTACTCGGCTGTCACGGTCACCATTGAGAATCTCACGTCCGAGTCGTATCCCGAAGACGA CCTCAGCGGAATCCCAGATCTGGTCGAGGTGATCAAACTGCAGGCATCGGGGCCAGGCGAGGCGGCGCGCGCCAT ACGCAAGAAGCTCAAGTATGGCAACGTTCATCGCCAGCTGCGAGCGCTGGTGCTCTTGGATGGCCTGATGCAAAA CGCGGGCTCCCGCTTCCAGCGTACCTTTGCCGATGAGCCGCTGCTCGAGCGCCTGCGCGTTTGTGGCACCAGCAA TCTCTCAGATGCAGCTGTGCGGCGTAAGTGCTCGGAGCTCTTCCGGGACTGGGCCCAGTATGCGTCAACACCAGG ACTGGAGCGCATTGCTCGTCTATATCGGGTACGTGATATTCCCCATGTGGCAAGCGCATGGCATTTCTGATGCCA TGGCCTAGGAACTTCCTAAAAAGAAGGTGGCCGTGACACAAGAACGATCCAAGGTGATTCAAGAGACGGAGAATC CGTTTGGCGACGACGAAGAAGAAGAAGCGCAACAAGCTGCTGCCGCCGGGCCCTCGCAGGCTCCATCCTCACACA CCTCGTCGTCGTCGCATCCACGCTTCATTCTCTCCCACGGCGACATGTTCCGCGCCGACAAGAAGAAGGACAAGG ATAGAGCAAAGGAAAAGAGCAAGAGCAAGAGCAAGCATCGGCCTTTTAACCTCGAGACGGAAAAGGAAAAGATGA AATCAGTTATTGCCGAAGCGTCTATTGAATATACGAGCCTCATGAACTCGCTGCAGAGCATCAATCGCGAGCAAG AACGCATCTCTGAAAATCCAGTCGCGGTGCGCCACTTTGAAGCCTGCAAGCAGCTGCGAAGGCGAATTCTTCGAT ATGTGAGTTCTCTTGGCATTGAGGCATCGTGGTTAGTACTTACAAGCAACAGATTCATCATGTTGAGAGCGAGCA GTGGCTTGGCAGTTTACTGCACGCCAACGACCAACTTGTCCATGCCCTCATGTCATTTGAGCAGCTCGACCAATC CATCGATGCAGATAGTGACTCGGACGACGCGCTTGCTGAGCAGGCACACATGTATCGAAGTATGCGCGCCATTTG CCTTGTCTCTGCTCCTTTTCACCAACCGTCTTATGACGGCCCTGAATCTTGACTTGACACAGCCAACACGACATA TTTCCCATAAAGTTGCTTGGTTCTTGGTTGCTGTCTTCTAACTGGTTGCAGTGGCTACTCTCAAGAATCATGCAG AGACGGGCCCTCCATCAAGTAGTGGCCGCCTGGTGCCCCATCTCTCGGGCCTGTCTCTGAAGCCGAAACCGCCAA CCGCTCGACCCAATAGCGTACCTAATGACTATGACGACGGCGACGACGACGATGACGACGATGCAGAAAATCCCT TTGGCGACAAGAATGTAGTTGTCGACACACCGGGACAAGAGCGCGACGAGCCTCGGTGGTAA |