© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|484 |
| Gene name | |
| Location | Contig_108:3989..4925 |
| Strand | + |
| Gene length (bp) | 936 |
| Transcript length (bp) | 936 |
| Coding sequence length (bp) | 936 |
| Protein length (aa) | 312 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF18121 | TFA2_Winged_2 | TFA2 Winged helix domain 2 | 1.2E-19 | 166 | 225 |
| PF02186 | TFIIE_beta | TFIIE beta subunit core domain | 1.0E-13 | 88 | 160 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P79011|T2EB_SCHPO | Transcription initiation factor IIE subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfa2 PE=1 SV=2 | 21 | 310 | 8.0E-41 |
| sp|P36145|T2EB_YEAST | Transcription initiation factor IIE subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFA2 PE=1 SV=3 | 89 | 307 | 9.0E-38 |
| sp|P29540|T2EB_XENLA | General transcription factor IIE subunit 2 OS=Xenopus laevis GN=gtf2e2 PE=2 SV=1 | 95 | 309 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006367 | transcription initiation from RNA polymerase II promoter | Yes |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006352 | DNA-templated transcription, initiation | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 53 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|484 MPSYLEKQSSAFRGTLASAASKLSNPSSSMAKSSAVASLSASSLAPPSPSPSAASDSTTPTGVKRKRDAAPDVPF SQPQLTGYGSEVKTQMTFAVDYLKKKGEPKSATDIIDHLSLRSHADEHKRELIEGLRGHPRVEWKPNASLKEQSW RTGTYSHRPVIPGVRDGTSLLAHLQRKSDSSGVSVKDLKDGWPDCDETLASLERQHRILVVRTKKDGLARYVWLD DPSLHHGVEAEFQSMWQRVNLPSLDDMHRRLVSVGQKPTSEDPRKANQANSGAKPKAQKKRAGKRAGKATNVHMA HLMQDYSSLRR* |
| Coding | >OphauB2|484 ATGCCGTCATATCTGGAAAAACAGTCGTCGGCGTTTCGCGGGACGCTGGCGTCTGCGGCGTCCAAGCTGTCCAAC CCGAGCAGCAGCATGGCCAAGTCGTCGGCTGTAGCTTCTCTATCAGCCTCGTCGCTGGCTCCGCCATCCCCGTCA CCCTCTGCCGCATCGGATAGCACGACGCCAACGGGGGTCAAGCGCAAGCGCGATGCGGCCCCCGACGTGCCCTTT TCGCAACCCCAGTTGACGGGCTACGGCTCAGAGGTCAAGACGCAAATGACATTTGCTGTTGACTATCTCAAAAAG AAGGGCGAGCCCAAGTCTGCAACGGATATCATTGACCACCTGAGTCTGCGGTCACATGCGGACGAACACAAGCGC GAGCTGATCGAGGGCCTGCGAGGCCACCCACGAGTCGAATGGAAGCCCAATGCTTCACTCAAGGAGCAGAGCTGG CGCACAGGGACATATAGTCACCGGCCCGTTATCCCCGGGGTTCGCGATGGCACGTCTTTGCTGGCTCATCTTCAA CGCAAGTCGGATTCGTCGGGCGTTTCCGTCAAGGATCTCAAGGACGGCTGGCCTGATTGCGACGAGACACTGGCC TCGCTCGAGCGCCAGCATCGTATACTAGTGGTGCGAACCAAAAAGGACGGCCTGGCCCGCTACGTCTGGCTCGAT GACCCCTCGCTACACCATGGCGTCGAGGCGGAATTCCAGTCCATGTGGCAGCGCGTCAACTTGCCCAGCCTCGAC GACATGCATCGCCGCCTGGTTTCTGTAGGCCAAAAACCCACGAGCGAGGACCCGCGCAAGGCAAACCAGGCAAAC AGTGGCGCCAAGCCCAAGGCGCAGAAGAAGCGAGCAGGCAAGCGGGCGGGGAAAGCGACCAATGTGCACATGGCA CATCTTATGCAAGACTACAGCAGCCTGCGACGATGA |
| Transcript | >OphauB2|484 ATGCCGTCATATCTGGAAAAACAGTCGTCGGCGTTTCGCGGGACGCTGGCGTCTGCGGCGTCCAAGCTGTCCAAC CCGAGCAGCAGCATGGCCAAGTCGTCGGCTGTAGCTTCTCTATCAGCCTCGTCGCTGGCTCCGCCATCCCCGTCA CCCTCTGCCGCATCGGATAGCACGACGCCAACGGGGGTCAAGCGCAAGCGCGATGCGGCCCCCGACGTGCCCTTT TCGCAACCCCAGTTGACGGGCTACGGCTCAGAGGTCAAGACGCAAATGACATTTGCTGTTGACTATCTCAAAAAG AAGGGCGAGCCCAAGTCTGCAACGGATATCATTGACCACCTGAGTCTGCGGTCACATGCGGACGAACACAAGCGC GAGCTGATCGAGGGCCTGCGAGGCCACCCACGAGTCGAATGGAAGCCCAATGCTTCACTCAAGGAGCAGAGCTGG CGCACAGGGACATATAGTCACCGGCCCGTTATCCCCGGGGTTCGCGATGGCACGTCTTTGCTGGCTCATCTTCAA CGCAAGTCGGATTCGTCGGGCGTTTCCGTCAAGGATCTCAAGGACGGCTGGCCTGATTGCGACGAGACACTGGCC TCGCTCGAGCGCCAGCATCGTATACTAGTGGTGCGAACCAAAAAGGACGGCCTGGCCCGCTACGTCTGGCTCGAT GACCCCTCGCTACACCATGGCGTCGAGGCGGAATTCCAGTCCATGTGGCAGCGCGTCAACTTGCCCAGCCTCGAC GACATGCATCGCCGCCTGGTTTCTGTAGGCCAAAAACCCACGAGCGAGGACCCGCGCAAGGCAAACCAGGCAAAC AGTGGCGCCAAGCCCAAGGCGCAGAAGAAGCGAGCAGGCAAGCGGGCGGGGAAAGCGACCAATGTGCACATGGCA CATCTTATGCAAGACTACAGCAGCCTGCGACGATGA |
| Gene | >OphauB2|484 ATGCCGTCATATCTGGAAAAACAGTCGTCGGCGTTTCGCGGGACGCTGGCGTCTGCGGCGTCCAAGCTGTCCAAC CCGAGCAGCAGCATGGCCAAGTCGTCGGCTGTAGCTTCTCTATCAGCCTCGTCGCTGGCTCCGCCATCCCCGTCA CCCTCTGCCGCATCGGATAGCACGACGCCAACGGGGGTCAAGCGCAAGCGCGATGCGGCCCCCGACGTGCCCTTT TCGCAACCCCAGTTGACGGGCTACGGCTCAGAGGTCAAGACGCAAATGACATTTGCTGTTGACTATCTCAAAAAG AAGGGCGAGCCCAAGTCTGCAACGGATATCATTGACCACCTGAGTCTGCGGTCACATGCGGACGAACACAAGCGC GAGCTGATCGAGGGCCTGCGAGGCCACCCACGAGTCGAATGGAAGCCCAATGCTTCACTCAAGGAGCAGAGCTGG CGCACAGGGACATATAGTCACCGGCCCGTTATCCCCGGGGTTCGCGATGGCACGTCTTTGCTGGCTCATCTTCAA CGCAAGTCGGATTCGTCGGGCGTTTCCGTCAAGGATCTCAAGGACGGCTGGCCTGATTGCGACGAGACACTGGCC TCGCTCGAGCGCCAGCATCGTATACTAGTGGTGCGAACCAAAAAGGACGGCCTGGCCCGCTACGTCTGGCTCGAT GACCCCTCGCTACACCATGGCGTCGAGGCGGAATTCCAGTCCATGTGGCAGCGCGTCAACTTGCCCAGCCTCGAC GACATGCATCGCCGCCTGGTTTCTGTAGGCCAAAAACCCACGAGCGAGGACCCGCGCAAGGCAAACCAGGCAAAC AGTGGCGCCAAGCCCAAGGCGCAGAAGAAGCGAGCAGGCAAGCGGGCGGGGAAAGCGACCAATGTGCACATGGCA CATCTTATGCAAGACTACAGCAGCCTGCGACGATGA |