© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|4734 |
| Gene name | |
| Location | Contig_323:482..1741 |
| Strand | + |
| Gene length (bp) | 1259 |
| Transcript length (bp) | 945 |
| Coding sequence length (bp) | 945 |
| Protein length (aa) | 315 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.6E-18 | 70 | 139 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10422|YDC1_SCHPO | Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25G10.01 PE=1 SV=1 | 43 | 219 | 1.0E-24 |
| sp|P62997|TRA2B_RAT | Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b PE=1 SV=1 | 65 | 216 | 4.0E-14 |
| sp|P62996|TRA2B_MOUSE | Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1 SV=1 | 65 | 216 | 4.0E-14 |
| sp|P62995|TRA2B_HUMAN | Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1 | 65 | 216 | 4.0E-14 |
| sp|Q3ZBT6|TRA2B_BOVIN | Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1 | 65 | 216 | 4.0E-14 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10422|YDC1_SCHPO | Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25G10.01 PE=1 SV=1 | 43 | 219 | 1.0E-24 |
| sp|P62997|TRA2B_RAT | Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b PE=1 SV=1 | 65 | 216 | 4.0E-14 |
| sp|P62996|TRA2B_MOUSE | Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1 SV=1 | 65 | 216 | 4.0E-14 |
| sp|P62995|TRA2B_HUMAN | Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1 | 65 | 216 | 4.0E-14 |
| sp|Q3ZBT6|TRA2B_BOVIN | Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1 | 65 | 216 | 4.0E-14 |
| sp|Q84TH4|SR45A_ARATH | Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana GN=SR45A PE=1 SV=1 | 63 | 168 | 6.0E-14 |
| sp|P19018|TRA2_DROME | Transformer-2 sex-determining protein OS=Drosophila melanogaster GN=tra2 PE=1 SV=1 | 72 | 198 | 1.0E-13 |
| sp|O02008|TRA2_DROVI | Transformer-2 sex-determining protein OS=Drosophila virilis GN=tra2 PE=3 SV=1 | 72 | 168 | 2.0E-12 |
| sp|Q54Y98|TRA2_DICDI | Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2 PE=3 SV=1 | 63 | 173 | 3.0E-12 |
| sp|Q8N7X1|RMXL3_HUMAN | RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens GN=RBMXL3 PE=2 SV=2 | 70 | 176 | 9.0E-11 |
| sp|Q6IRQ4|RBMX_XENLA | RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx PE=2 SV=1 | 69 | 153 | 2.0E-10 |
| sp|P0C8Z4|RMXL3_PANTR | RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes GN=RBMXL3 PE=3 SV=1 | 70 | 176 | 2.0E-10 |
| sp|Q9PTX2|CIRBP_LITCT | Cold-inducible RNA-binding protein OS=Lithobates catesbeiana GN=cirbp PE=2 SV=1 | 70 | 147 | 2.0E-09 |
| sp|Q91VM5|RMXL1_MOUSE | RNA binding motif protein, X-linked-like-1 OS=Mus musculus GN=Rbmxl1 PE=2 SV=1 | 70 | 146 | 4.0E-09 |
| sp|Q4V898|RBMX_RAT | RNA-binding motif protein, X chromosome OS=Rattus norvegicus GN=Rbmx PE=1 SV=1 | 69 | 146 | 4.0E-09 |
| sp|Q8RWN5|RZ1C_ARATH | Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana GN=RZ1C PE=1 SV=1 | 63 | 144 | 4.0E-09 |
| sp|Q4R7F0|RBMX_MACFA | RNA-binding motif protein, X chromosome OS=Macaca fascicularis GN=RBMX PE=2 SV=1 | 70 | 146 | 4.0E-09 |
| sp|A5A6M3|RBMX_PANTR | RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX PE=2 SV=1 | 70 | 146 | 4.0E-09 |
| sp|P38159|RBMX_HUMAN | RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX PE=1 SV=3 | 70 | 146 | 4.0E-09 |
| sp|Q9WV02|RBMX_MOUSE | RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx PE=1 SV=1 | 69 | 146 | 5.0E-09 |
| sp|Q96E39|RMXL1_HUMAN | RNA binding motif protein, X-linked-like-1 OS=Homo sapiens GN=RBMXL1 PE=1 SV=1 | 70 | 146 | 5.0E-09 |
| sp|Q9WX37|RBPE_NOSS1 | Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rbpE PE=3 SV=3 | 69 | 145 | 6.0E-09 |
| sp|P84586|RMXRL_RAT | RNA-binding motif protein, X chromosome retrogene-like OS=Rattus norvegicus GN=Rbmxrtl PE=1 SV=1 | 70 | 146 | 1.0E-08 |
| sp|D4AE41|RMXL1_RAT | RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus GN=Rbmxl1 PE=3 SV=1 | 70 | 146 | 2.0E-08 |
| sp|Q4R813|RMXL2_MACFA | RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1 | 69 | 146 | 3.0E-08 |
| sp|Q14151|SAFB2_HUMAN | Scaffold attachment factor B2 OS=Homo sapiens GN=SAFB2 PE=1 SV=1 | 51 | 145 | 3.0E-08 |
| sp|Q6PFR5|TRA2A_MOUSE | Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1 SV=1 | 65 | 161 | 3.0E-08 |
| sp|Q13595|TRA2A_HUMAN | Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1 SV=1 | 65 | 161 | 3.0E-08 |
| sp|Q8LPQ9|FPA_ARATH | Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA PE=2 SV=2 | 67 | 149 | 3.0E-08 |
| sp|A4QUF0|PABP_MAGO7 | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=PAB1 PE=3 SV=1 | 68 | 150 | 3.0E-08 |
| sp|Q08937|ROC2_NICSY | 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 | 70 | 156 | 3.0E-08 |
| sp|P28644|ROC1_SPIOL | 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1 | 68 | 170 | 4.0E-08 |
| sp|Q29RT0|RBMX_BOVIN | RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2 SV=1 | 69 | 146 | 4.0E-08 |
| sp|Q57014|RBPA_SYNY3 | Putative RNA-binding protein RbpA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rbpA PE=3 SV=3 | 69 | 145 | 4.0E-08 |
| sp|O75526|RMXL2_HUMAN | RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3 | 69 | 146 | 4.0E-08 |
| sp|Q9CAE4|U1131_ARATH | U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana GN=SNRNP31 PE=2 SV=1 | 68 | 144 | 6.0E-08 |
| sp|P30352|SRSF2_CHICK | Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2 PE=2 SV=1 | 68 | 149 | 6.0E-08 |
| sp|Q5RF83|CIRBP_PONAB | Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1 | 70 | 144 | 6.0E-08 |
| sp|Q14011|CIRBP_HUMAN | Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1 | 70 | 144 | 6.0E-08 |
| sp|Q9V535|RBM8A_DROME | RNA-binding protein 8A OS=Drosophila melanogaster GN=tsu PE=1 SV=1 | 57 | 141 | 7.0E-08 |
| sp|Q28IQ9|CIRBP_XENTR | Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1 | 70 | 144 | 7.0E-08 |
| sp|Q5D018|RBM8A_DANRE | RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1 | 67 | 141 | 8.0E-08 |
| sp|O22703|RZ1B_ARATH | Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana GN=RZ1B PE=2 SV=1 | 65 | 144 | 8.0E-08 |
| sp|P49314|ROC2_NICPL | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1 | 45 | 156 | 1.0E-07 |
| sp|P98179|RBM3_HUMAN | RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1 | 70 | 144 | 1.0E-07 |
| sp|Q60990|RBY1B_MOUSE | RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus musculus GN=Rbmy1b PE=2 SV=3 | 70 | 146 | 1.0E-07 |
| sp|Q9ZUU4|CP29B_ARATH | RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1 | 70 | 141 | 1.0E-07 |
| sp|P60825|CIRBP_RAT | Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1 | 70 | 144 | 1.0E-07 |
| sp|P60824|CIRBP_MOUSE | Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1 | 70 | 144 | 1.0E-07 |
| sp|P60826|CIRBP_CRIGR | Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1 | 70 | 144 | 1.0E-07 |
| sp|O35698|RBY1A_MOUSE | RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Mus musculus GN=Rbmy1a1 PE=1 SV=2 | 64 | 146 | 1.0E-07 |
| sp|Q9DED4|CIRBB_XENLA | Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b PE=1 SV=1 | 70 | 144 | 1.0E-07 |
| sp|B5DGI7|RBM8A_SALSA | RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1 | 67 | 141 | 2.0E-07 |
| sp|Q9TTV2|ROA2_SAGOE | Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus GN=HNRNPA2B1 PE=1 SV=1 | 70 | 162 | 2.0E-07 |
| sp|Q09511|RSP4_CAEEL | Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis elegans GN=rsp-4 PE=3 SV=1 | 64 | 149 | 2.0E-07 |
| sp|Q9CWZ3|RBM8A_MOUSE | RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE=1 SV=3 | 67 | 141 | 2.0E-07 |
| sp|Q9LIN3|RZ1A_ARATH | Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1 | 65 | 145 | 3.0E-07 |
| sp|Q27W01|RBM8A_RAT | RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm8a PE=1 SV=1 | 67 | 141 | 3.0E-07 |
| sp|Q9Y5S9|RBM8A_HUMAN | RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE=1 SV=1 | 67 | 141 | 3.0E-07 |
| sp|Q3ZCE8|RBM8A_BOVIN | RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2 SV=2 | 67 | 141 | 3.0E-07 |
| sp|Q5R452|SAFB1_PONAB | Scaffold attachment factor B1 OS=Pongo abelii GN=SAFB PE=2 SV=1 | 49 | 145 | 3.0E-07 |
| sp|Q15424|SAFB1_HUMAN | Scaffold attachment factor B1 OS=Homo sapiens GN=SAFB PE=1 SV=4 | 49 | 145 | 3.0E-07 |
| sp|A5A6H4|ROA1_PANTR | Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1 | 70 | 162 | 3.0E-07 |
| sp|P49312|ROA1_MOUSE | Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2 | 70 | 162 | 3.0E-07 |
| sp|P09867|ROA1_BOVIN | Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2 | 70 | 162 | 3.0E-07 |
| sp|Q2HJ60|ROA2_BOVIN | Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus GN=HNRNPA2B1 PE=2 SV=1 | 70 | 162 | 3.0E-07 |
| sp|A6NDE4|RBY1B_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo sapiens GN=RBMY1B PE=2 SV=2 | 63 | 146 | 4.0E-07 |
| sp|P04256|ROA1_RAT | Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3 | 70 | 162 | 4.0E-07 |
| sp|Q06A98|SRSF2_PIG | Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2 SV=1 | 68 | 149 | 4.0E-07 |
| sp|Q5R1W5|SRSF2_PANTR | Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2 PE=2 SV=3 | 68 | 149 | 4.0E-07 |
| sp|Q28521|ROA1_MACMU | Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3 | 70 | 162 | 4.0E-07 |
| sp|P0DJD3|RBY1A_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo sapiens GN=RBMY1A1 PE=1 SV=1 | 63 | 146 | 4.0E-07 |
| sp|A6NEQ0|RBY1E_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo sapiens GN=RBMY1E PE=2 SV=1 | 63 | 146 | 4.0E-07 |
| sp|P0C7P1|RBY1D_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo sapiens GN=RBMY1D PE=2 SV=1 | 63 | 146 | 4.0E-07 |
| sp|Q6PDU1|SRSF2_RAT | Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus GN=Srsf2 PE=1 SV=3 | 68 | 149 | 4.0E-07 |
| sp|Q62093|SRSF2_MOUSE | Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2 PE=1 SV=4 | 68 | 149 | 4.0E-07 |
| sp|Q01130|SRSF2_HUMAN | Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4 | 68 | 149 | 4.0E-07 |
| sp|Q3MHR5|SRSF2_BOVIN | Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2 SV=3 | 68 | 149 | 4.0E-07 |
| sp|Q80YR5|SAFB2_MOUSE | Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2 | 49 | 145 | 5.0E-07 |
| sp|O89086|RBM3_MOUSE | RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1 | 70 | 144 | 5.0E-07 |
| sp|Q9BRL6|SRSF8_HUMAN | Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8 PE=1 SV=1 | 59 | 145 | 5.0E-07 |
| sp|P0DJD4|RBY1C_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member C OS=Homo sapiens GN=RBMY1C PE=1 SV=1 | 63 | 146 | 5.0E-07 |
| sp|O88569|ROA2_MOUSE | Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus GN=Hnrnpa2b1 PE=1 SV=2 | 70 | 162 | 6.0E-07 |
| sp|P22626|ROA2_HUMAN | Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2 | 70 | 162 | 6.0E-07 |
| sp|A7VJC2|ROA2_RAT | Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus GN=Hnrnpa2b1 PE=1 SV=1 | 70 | 162 | 6.0E-07 |
| sp|Q15415|RBY1F_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member F/J OS=Homo sapiens GN=RBMY1F PE=1 SV=2 | 63 | 146 | 6.0E-07 |
| sp|O93235|CIRBA_XENLA | Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a PE=1 SV=2 | 70 | 144 | 6.0E-07 |
| sp|Q5RBU8|ROA2_PONAB | Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii GN=HNRNPA2B1 PE=2 SV=1 | 70 | 162 | 6.0E-07 |
| sp|P09651|ROA1_HUMAN | Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5 | 70 | 162 | 6.0E-07 |
| sp|Q32P51|RA1L2_HUMAN | Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2 | 70 | 162 | 6.0E-07 |
| sp|Q925G0|RBM3_RAT | RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2 | 70 | 144 | 7.0E-07 |
| sp|Q3SWU3|HNRDL_RAT | Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus GN=Hnrnpdl PE=1 SV=1 | 23 | 158 | 8.0E-07 |
| sp|O88453|SAFB1_RAT | Scaffold attachment factor B1 OS=Rattus norvegicus GN=Safb PE=1 SV=2 | 49 | 145 | 9.0E-07 |
| sp|Q9SEU4|SRC33_ARATH | Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana GN=SCL33 PE=1 SV=1 | 23 | 144 | 9.0E-07 |
| sp|Q28BZ1|RBM8A_XENTR | RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1 | 67 | 141 | 9.0E-07 |
| sp|Q9WX39|RBPF_NOSS1 | Putative RNA-binding protein RbpF OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rbpF PE=3 SV=3 | 69 | 145 | 1.0E-06 |
| sp|P51990|RO22_XENLA | Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus laevis PE=2 SV=1 | 70 | 162 | 1.0E-06 |
| sp|Q44556|RBPD_NOSS1 | Putative RNA-binding protein RbpD OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rbpD PE=3 SV=3 | 69 | 145 | 1.0E-06 |
| sp|Q5ARI5|PPIL4_EMENI | Peptidyl-prolyl cis-trans isomerase-like 4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cyp6 PE=3 SV=1 | 66 | 264 | 1.0E-06 |
| sp|Q99069|GRP1_SORBI | Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1 | 88 | 145 | 1.0E-06 |
| sp|Q96DH6|MSI2H_HUMAN | RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1 | 55 | 153 | 1.0E-06 |
| sp|Q920Q6|MSI2H_MOUSE | RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1 | 55 | 153 | 1.0E-06 |
| sp|Q6PH90|RB8AB_XENLA | RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-b PE=2 SV=1 | 67 | 141 | 1.0E-06 |
| sp|Q08935|ROC1_NICSY | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 | 57 | 141 | 1.0E-06 |
| sp|P17130|ROA1_XENLA | Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus laevis GN=hnrnpa1 PE=2 SV=1 | 70 | 162 | 1.0E-06 |
| sp|D3YXK2|SAFB1_MOUSE | Scaffold attachment factor B1 OS=Mus musculus GN=Safb PE=1 SV=2 | 49 | 145 | 2.0E-06 |
| sp|Q9DF42|RB8AA_XENLA | RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-a PE=2 SV=1 | 67 | 141 | 2.0E-06 |
| sp|P48810|RB87F_DROME | Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila melanogaster GN=Hrb87F PE=2 SV=2 | 70 | 150 | 2.0E-06 |
| sp|Q02926|RB97D_DROME | Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2 SV=1 | 70 | 150 | 2.0E-06 |
| sp|O01671|SXL_MEGSC | Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3 | 68 | 186 | 2.0E-06 |
| sp|P0C1I6|PPIL4_RHIO9 | Peptidyl-prolyl cis-trans isomerase-like 4 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp13 PE=3 SV=1 | 66 | 216 | 2.0E-06 |
| sp|P49313|ROC1_NICPL | 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1 | 65 | 141 | 2.0E-06 |
| sp|P42731|PABP2_ARATH | Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1 | 68 | 146 | 3.0E-06 |
| sp|P07909|ROA1_DROME | Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster GN=Hrb98DE PE=2 SV=1 | 70 | 150 | 3.0E-06 |
| sp|Q60899|ELAV2_MOUSE | ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1 | 68 | 145 | 3.0E-06 |
| sp|Q5R9Z6|ELAV2_PONAB | ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1 | 68 | 145 | 3.0E-06 |
| sp|Q12926|ELAV2_HUMAN | ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2 | 68 | 145 | 3.0E-06 |
| sp|Q04836|CP31A_ARATH | 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1 | 68 | 149 | 3.0E-06 |
| sp|Q5ZI72|HNRDL_CHICK | Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus GN=HNRNPDL PE=2 SV=1 | 50 | 158 | 3.0E-06 |
| sp|Q44554|RBPB_NOSS1 | Putative RNA-binding protein RbpB OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rbpB PE=3 SV=3 | 69 | 145 | 3.0E-06 |
| sp|Q9FGS0|CP31B_ARATH | RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana GN=CP31B PE=1 SV=1 | 84 | 150 | 4.0E-06 |
| sp|P51989|RO21_XENLA | Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus laevis PE=2 SV=1 | 70 | 162 | 4.0E-06 |
| sp|Q9FNR1|RBG3_ARATH | Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1 | 68 | 144 | 5.0E-06 |
| sp|Q9USY2|YOW4_SCHPO | Uncharacterized RNA-binding protein C1861.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1861.04c PE=3 SV=1 | 62 | 151 | 5.0E-06 |
| sp|Q43349|CP29A_ARATH | 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP29A PE=2 SV=2 | 38 | 141 | 5.0E-06 |
| sp|Q43472|GRP_HORVU | Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1 | 71 | 149 | 6.0E-06 |
| sp|Q9FMG4|SC35_ARATH | Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana GN=SC35 PE=1 SV=1 | 69 | 145 | 6.0E-06 |
| sp|Q28GD4|ELAV2_XENTR | ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2 | 68 | 145 | 7.0E-06 |
| sp|O09032|ELAV4_RAT | ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1 | 68 | 145 | 8.0E-06 |
| sp|P92964|SRS31_ARATH | Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 SV=2 | 64 | 144 | 8.0E-06 |
| sp|P51968|RO31_XENLA | Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus laevis PE=2 SV=1 | 70 | 200 | 8.0E-06 |
| sp|Q99729|ROAA_HUMAN | Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens GN=HNRNPAB PE=1 SV=2 | 42 | 159 | 9.0E-06 |
| sp|Q6IQE0|PU60B_DANRE | Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2 | 70 | 115 | 1.0E-05 |
| sp|Q61701|ELAV4_MOUSE | ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1 | 68 | 145 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| Orthofinder run ID | 4 |
| Orthogroup | 4992 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|4734 MDYEAAGGDRYDEEAPRYERDNRSASPRPVRDDDGRRRSASPNGNTDLASKDMMSSKDDDDGAVNPGSNLFVTGI HPRLAECDVATMFEKYGDVEKCQIMRDPHTKESRGFGFVKMITSAQAEAAKEGLQGEQIEGRTLSIEKARRARPR TPTPGKYFGPPKREPRGRFDDRRRGGYGGSAGAGYGREDYRYRGYDRGYGSDRRNDDRGYDRGGYRDDRRYDDRG YGRDYERGYERRDRGDDYYGRDRYGGREDRDRYGGRGNAGGYERDRYDRPADRDPTRNREPLGGGSGYGESASRG DTRESYGGPDPTVR* |
| Coding | >OphauB2|4734 ATGGACTATGAGGCTGCAGGTGGCGATCGGTACGACGAAGAGGCTCCGAGGTATGAGCGCGATAATCGAAGCGCC TCTCCTCGCCCAGTTCGCGATGACGATGGCCGTCGTCGCTCGGCATCCCCAAATGGCAACACTGACTTGGCCTCT AAGGACATGATGTCGTCCAAAGACGACGATGATGGCGCTGTGAATCCTGGCTCCAACCTCTTTGTCACTGGAATC CATCCTCGCCTGGCCGAGTGTGATGTTGCAACAATGTTTGAAAAATATGGCGACGTTGAAAAATGCCAGATCATG CGTGACCCGCACACCAAAGAGTCTCGCGGCTTTGGGTTCGTGAAAATGATCACTTCCGCACAGGCCGAGGCCGCC AAAGAGGGCCTTCAGGGCGAACAGATTGAGGGCCGCACTTTGAGCATTGAAAAGGCTCGTCGTGCTCGCCCGCGT ACTCCAACCCCTGGCAAATATTTTGGACCACCTAAACGTGAGCCCCGTGGTCGTTTTGATGACCGCCGACGTGGC GGCTACGGTGGCAGTGCCGGCGCTGGTTATGGGCGCGAAGATTATCGTTATCGTGGATACGATCGGGGCTACGGC TCAGACCGCAGAAATGATGACCGTGGCTACGATCGCGGTGGATATCGTGATGATCGACGTTACGATGATCGTGGT TATGGCCGCGACTATGAACGAGGTTATGAACGCCGGGACCGAGGAGACGACTATTACGGCAGAGATCGTTATGGT GGACGCGAAGATCGTGACCGCTATGGAGGTCGAGGTAATGCAGGTGGCTACGAACGCGACCGTTACGACCGTCCC GCAGATCGCGACCCTACTCGCAATCGTGAGCCGCTTGGTGGTGGCTCTGGCTATGGCGAGTCTGCTTCCCGTGGT GATACTCGCGAGTCTTATGGAGGCCCTGATCCGACAGTCCGATAG |
| Transcript | >OphauB2|4734 ATGGACTATGAGGCTGCAGGTGGCGATCGGTACGACGAAGAGGCTCCGAGGTATGAGCGCGATAATCGAAGCGCC TCTCCTCGCCCAGTTCGCGATGACGATGGCCGTCGTCGCTCGGCATCCCCAAATGGCAACACTGACTTGGCCTCT AAGGACATGATGTCGTCCAAAGACGACGATGATGGCGCTGTGAATCCTGGCTCCAACCTCTTTGTCACTGGAATC CATCCTCGCCTGGCCGAGTGTGATGTTGCAACAATGTTTGAAAAATATGGCGACGTTGAAAAATGCCAGATCATG CGTGACCCGCACACCAAAGAGTCTCGCGGCTTTGGGTTCGTGAAAATGATCACTTCCGCACAGGCCGAGGCCGCC AAAGAGGGCCTTCAGGGCGAACAGATTGAGGGCCGCACTTTGAGCATTGAAAAGGCTCGTCGTGCTCGCCCGCGT ACTCCAACCCCTGGCAAATATTTTGGACCACCTAAACGTGAGCCCCGTGGTCGTTTTGATGACCGCCGACGTGGC GGCTACGGTGGCAGTGCCGGCGCTGGTTATGGGCGCGAAGATTATCGTTATCGTGGATACGATCGGGGCTACGGC TCAGACCGCAGAAATGATGACCGTGGCTACGATCGCGGTGGATATCGTGATGATCGACGTTACGATGATCGTGGT TATGGCCGCGACTATGAACGAGGTTATGAACGCCGGGACCGAGGAGACGACTATTACGGCAGAGATCGTTATGGT GGACGCGAAGATCGTGACCGCTATGGAGGTCGAGGTAATGCAGGTGGCTACGAACGCGACCGTTACGACCGTCCC GCAGATCGCGACCCTACTCGCAATCGTGAGCCGCTTGGTGGTGGCTCTGGCTATGGCGAGTCTGCTTCCCGTGGT GATACTCGCGAGTCTTATGGAGGCCCTGATCCGACAGTCCGATAG |
| Gene | >OphauB2|4734 ATGGACTATGAGGCTGCAGGTGGCGATCGGTACGACGGTACGTCTCTTAATCTCCTGCCCACTCAATTTTCGATA CAACGAGGCTCTCTTTCCTCCCTCATCGTCATATCGTGCCCGATTTTCTGTATATACACTGTTCATGCCCTCATT CAATCGTTCTCCAGAAGAGGCTCCGAGGTATGAGCGCGATAATCGAAGCGCCTCTCCTCGCCCAGTTCGCGATGA CGATGGCCGTCGTCGCTCGGCATCCCCAAATGGCAACACTGACTTGTAAGTCTACCCACTGGCACATATGCTTCC ATGTGTGTTTTTACTGACAATTGAAACTATTTATTGCTGCATCGCATAGGGCCTCTAAGGACATGATGTCGTCCA AAGACGACGATGATGGCGCTGTGAATCCTGGCTCCAACCTCTTTGTCACTGGAATCCATCCTCGCCTGGCCGAGT GTGATGTTGCAACAATGTTTGAAAAATATGGCGACGTTGAAAAATGCCAGATCATGCGTGACCCGCACACCAAAG AGTCTCGCGGCTTTGGGTTCGTGAAAATGATCACTTCCGCACAGGCCGAGGCCGCCAAAGAGGGCCTTCAGGGCG AACAGATTGAGGGCCGCACTTTGAGCATTGAAAAGGCTCGTCGTGCTCGCCCGCGTACTCCAACCCCTGGCAAAT ATTTTGGACCACCTAAACGTGGTACGTTGACTTCCAAAATACTCTCACTCGTGACTTTTCTCGCTGATGAGCCAT TAGAGCCCCGTGGTCGTTTTGATGACCGCCGACGTGGCGGCTACGGTGGCAGTGCCGGCGCTGGTTATGGGCGCG AAGATTATCGTTATCGTGGATACGATCGGGGCTACGGCTCAGACCGCAGAAATGATGACCGTGGCTACGATCGCG GTGGATATCGTGATGATCGACGTTACGATGATCGTGGTTATGGCCGCGACTATGAACGAGGTTATGAACGCCGGG ACCGAGGAGACGACTATTACGGCAGAGATCGTTATGGTGGACGCGAAGATCGTGACCGCTATGGAGGTCGAGGTA ATGCAGGTGGCTACGAACGCGACCGTTACGACCGTCCCGCAGATCGCGACCCTACTCGCAATCGTGAGCCGCTTG GTGGTGGCTCTGGCTATGGCGAGTCTGCTTCCCGTGGTGATACTCGCGAGTCTTATGGAGGTTTGAGTCATTCCG ACGTAGTATCGCAGCGTCGTGTACTGATATTTCCAGGCCCTGATCCGACAGTCCGATAG |