© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|4669 |
| Gene name | |
| Location | Contig_313:3468..6122 |
| Strand | - |
| Gene length (bp) | 2654 |
| Transcript length (bp) | 2040 |
| Coding sequence length (bp) | 2040 |
| Protein length (aa) | 680 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04059 | RRM_2 | RNA recognition motif 2 | 5.0E-21 | 466 | 519 |
| PF04059 | RRM_2 | RNA recognition motif 2 | 6.6E-10 | 527 | 579 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P08965|MEI2_SCHPO | Meiosis protein mei2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mei2 PE=1 SV=1 | 448 | 640 | 1.0E-49 |
| sp|Q6ZI17|OML2_ORYSJ | Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2 SV=1 | 426 | 613 | 1.0E-32 |
| sp|Q8W4I9|AML1_ARATH | Protein MEI2-like 1 OS=Arabidopsis thaliana GN=ML1 PE=1 SV=1 | 454 | 617 | 6.0E-31 |
| sp|Q75M35|OML3_ORYSJ | Protein MEI2-like 3 OS=Oryza sativa subsp. japonica GN=ML3 PE=2 SV=2 | 433 | 617 | 7.0E-31 |
| sp|Q64M78|OML4_ORYSJ | Protein MEI2-like 4 OS=Oryza sativa subsp. japonica GN=ML4 PE=2 SV=1 | 454 | 613 | 9.0E-31 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P08965|MEI2_SCHPO | Meiosis protein mei2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mei2 PE=1 SV=1 | 448 | 640 | 1.0E-49 |
| sp|Q6ZI17|OML2_ORYSJ | Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2 SV=1 | 426 | 613 | 1.0E-32 |
| sp|Q8W4I9|AML1_ARATH | Protein MEI2-like 1 OS=Arabidopsis thaliana GN=ML1 PE=1 SV=1 | 454 | 617 | 6.0E-31 |
| sp|Q75M35|OML3_ORYSJ | Protein MEI2-like 3 OS=Oryza sativa subsp. japonica GN=ML3 PE=2 SV=2 | 433 | 617 | 7.0E-31 |
| sp|Q64M78|OML4_ORYSJ | Protein MEI2-like 4 OS=Oryza sativa subsp. japonica GN=ML4 PE=2 SV=1 | 454 | 613 | 9.0E-31 |
| sp|Q9LYN7|AML4_ARATH | Protein MEI2-like 4 OS=Arabidopsis thaliana GN=ML4 PE=2 SV=1 | 454 | 617 | 1.0E-30 |
| sp|Q8VWF5|AML5_ARATH | Protein MEI2-like 5 OS=Arabidopsis thaliana GN=ML5 PE=1 SV=1 | 453 | 601 | 5.0E-29 |
| sp|Q6EQX3|OML5_ORYSJ | Protein MEI2-like 5 OS=Oryza sativa subsp. japonica GN=ML5 PE=2 SV=1 | 453 | 595 | 1.0E-27 |
| sp|Q9SVV9|AML3_ARATH | Protein MEI2-like 3 OS=Arabidopsis thaliana GN=ML3 PE=2 SV=2 | 454 | 603 | 4.0E-26 |
| sp|Q9SJG8|AML2_ARATH | Protein MEI2-like 2 OS=Arabidopsis thaliana GN=ML2 PE=2 SV=2 | 445 | 600 | 2.0E-21 |
| sp|Q0JGS5|EAR1_ORYSJ | Protein terminal ear1 homolog OS=Oryza sativa subsp. japonica GN=PLA2 PE=2 SV=1 | 464 | 595 | 2.0E-17 |
| sp|A2WY46|EAR1_ORYSI | Protein terminal ear1 homolog OS=Oryza sativa subsp. indica GN=PLA2 PE=2 SV=1 | 464 | 595 | 2.0E-17 |
| sp|O65001|TE1_MAIZE | Protein terminal ear1 OS=Zea mays GN=TE1 PE=2 SV=1 | 463 | 592 | 4.0E-17 |
| sp|Q6ET49|OML7_ORYSJ | Protein MEI2-like 7 OS=Oryza sativa subsp. japonica GN=OML7 PE=2 SV=1 | 467 | 595 | 2.0E-09 |
| sp|Q652K6|OML6_ORYSJ | Protein MEI2-like 6 OS=Oryza sativa subsp. japonica GN=ML6 PE=2 SV=1 | 467 | 595 | 1.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 57 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|4669 MAQVRERDNPSSPRSSCGAADSFKGTPETRLTAFSPEDGSAKSSKLLHGLARSASATPPVGRPLTSFCGSATHID KDPFVTPSHQPGTRLSPTASTFSPFSTSLKVGRAFDAAPIAAALSSDLGLSRHLHVSSSAHLSVTEVNTWLSELE ARGDPPCGARFSDPLDGQVCVHFSDIRDARSTTASARHAGKDWKVEYLDPSQLAKYGLACRDSKRCSSGQVDVLA AVPQGTALDVIQAMEAVQRLLQCNGRLFAFVRRSTFPNGSFKAMAEFCDASAAELAASSLGNIITSEGIHLLVSP HLIELSDGPSIMEAFQSLSMGRGRSGVDQHQAPDTTASRLAGPMDMRIHPTFAMYPLMFQPQFAAAPTGMSYVLD SFIPSGTQGPMTPMAPVSPSYSVAGPLYHTPPSPALTSQNSFSPSRSLTDFGRSDARRQHAMRINRSPYHNVASH HNHVDILRIRDGIDVRTTIMLRNIPNKVDQAMLKRIIDESSWGKYDFMYLRIDFANDCNVGYAFINFVDVGVWPP AVGFALTMMQPLDIIDKFVDARGNQRWNCFKSDKVAEISYATIQGKDCLVQKFRNSSVMLEAPHYRPKLYFTSNG PMPELAGQEEPFPEPDNQSKMKRSCENAEHVGLFTPNAGQHFRDEQRRRRSQYDRGTRLAALEEYDYETAIQNLY GTPT* |
| Coding | >OphauB2|4669 ATGGCCCAAGTTCGGGAGCGCGACAATCCATCGTCGCCGAGATCCTCGTGCGGCGCGGCCGACTCTTTCAAAGGT ACACCAGAGACACGTCTGACAGCCTTTTCTCCCGAAGATGGCTCGGCCAAGTCATCCAAGCTTCTCCATGGACTT GCCCGCTCCGCTTCTGCAACACCACCTGTGGGTCGACCTCTGACCAGTTTCTGTGGCTCTGCCACTCATATCGAC AAGGATCCCTTCGTCACTCCCTCCCACCAGCCTGGTACCCGGCTGTCCCCGACTGCGTCGACCTTCAGCCCATTT TCGACATCTCTCAAAGTTGGTCGGGCCTTCGACGCTGCTCCCATCGCCGCTGCTTTGAGCAGCGACTTGGGTTTG TCTCGACATCTGCATGTATCCTCCTCTGCTCACTTGTCCGTGACCGAGGTCAATACTTGGCTAAGTGAGCTAGAA GCTCGCGGCGATCCTCCTTGCGGAGCTCGCTTCTCAGACCCATTGGACGGCCAAGTTTGCGTTCATTTCTCGGAT ATTCGAGATGCACGTTCTACCACTGCCAGCGCTCGCCACGCGGGAAAAGACTGGAAGGTCGAATATCTCGATCCA TCCCAGCTAGCAAAGTACGGTTTGGCTTGTCGAGATTCAAAGCGATGCTCAAGTGGTCAAGTGGATGTTCTCGCC GCTGTCCCACAGGGCACTGCACTCGATGTGATCCAAGCCATGGAAGCAGTTCAGAGGCTTCTCCAATGCAACGGG CGCCTCTTCGCATTTGTCAGGCGGTCTACATTTCCAAATGGATCTTTCAAGGCCATGGCAGAATTCTGTGATGCG AGCGCTGCTGAGCTGGCGGCTTCGAGCTTGGGAAATATCATCACCTCAGAGGGCATTCATCTTCTCGTCTCCCCG CACCTGATTGAATTATCAGACGGTCCCAGCATTATGGAAGCATTTCAAAGCTTGTCCATGGGCAGAGGTCGGAGC GGTGTAGACCAGCATCAAGCACCTGACACGACTGCATCAAGGCTCGCGGGGCCTATGGACATGAGAATTCACCCT ACCTTTGCCATGTACCCGCTCATGTTCCAACCACAGTTTGCTGCGGCTCCGACCGGAATGTCCTATGTGTTGGAT TCATTTATTCCCTCTGGAACCCAGGGCCCCATGACTCCCATGGCACCGGTCTCGCCATCGTACTCGGTCGCGGGC CCGCTGTACCACACACCTCCGTCTCCTGCTCTGACATCCCAAAACAGCTTCAGTCCATCCAGATCGCTCACCGAC TTTGGTAGGTCGGATGCTCGAAGGCAGCACGCGATGCGCATCAATAGGTCTCCGTATCATAATGTGGCGAGCCAT CACAACCATGTTGACATTCTTCGTATTCGAGATGGTATAGATGTTCGTACCACGATCATGTTACGAAATATCCCC AATAAGGTTGATCAGGCGATGCTCAAGCGAATAATTGACGAATCAAGCTGGGGCAAATACGATTTCATGTACCTA CGCATCGACTTTGCTAATGACTGCAACGTTGGCTATGCATTTATCAACTTCGTTGACGTGGGTGTTTGGCCTCCT GCTGTTGGATTTGCGCTAACTATGATGCAGCCACTTGACATTATCGACAAGTTTGTGGATGCCAGGGGCAACCAG CGCTGGAACTGTTTCAAGAGCGACAAGGTAGCAGAAATATCATATGCAACCATACAAGGCAAGGATTGTCTCGTC CAGAAGTTTCGAAATAGCTCCGTAATGCTCGAGGCACCTCATTATCGACCAAAGCTGTACTTTACTTCGAATGGC CCCATGCCAGAATTGGCCGGCCAAGAAGAGCCATTTCCAGAGCCAGACAACCAGTCCAAAATGAAAAGAAGTTGC GAAAACGCAGAGCATGTCGGCCTGTTCACTCCCAATGCAGGACAGCACTTTCGTGACGAGCAACGACGTCGGCGC TCACAATACGACAGAGGCACTCGGCTTGCGGCCCTCGAAGAATACGACTACGAAACGGCTATCCAGAACCTCTAC GGCACGCCAACATGA |
| Transcript | >OphauB2|4669 ATGGCCCAAGTTCGGGAGCGCGACAATCCATCGTCGCCGAGATCCTCGTGCGGCGCGGCCGACTCTTTCAAAGGT ACACCAGAGACACGTCTGACAGCCTTTTCTCCCGAAGATGGCTCGGCCAAGTCATCCAAGCTTCTCCATGGACTT GCCCGCTCCGCTTCTGCAACACCACCTGTGGGTCGACCTCTGACCAGTTTCTGTGGCTCTGCCACTCATATCGAC AAGGATCCCTTCGTCACTCCCTCCCACCAGCCTGGTACCCGGCTGTCCCCGACTGCGTCGACCTTCAGCCCATTT TCGACATCTCTCAAAGTTGGTCGGGCCTTCGACGCTGCTCCCATCGCCGCTGCTTTGAGCAGCGACTTGGGTTTG TCTCGACATCTGCATGTATCCTCCTCTGCTCACTTGTCCGTGACCGAGGTCAATACTTGGCTAAGTGAGCTAGAA GCTCGCGGCGATCCTCCTTGCGGAGCTCGCTTCTCAGACCCATTGGACGGCCAAGTTTGCGTTCATTTCTCGGAT ATTCGAGATGCACGTTCTACCACTGCCAGCGCTCGCCACGCGGGAAAAGACTGGAAGGTCGAATATCTCGATCCA TCCCAGCTAGCAAAGTACGGTTTGGCTTGTCGAGATTCAAAGCGATGCTCAAGTGGTCAAGTGGATGTTCTCGCC GCTGTCCCACAGGGCACTGCACTCGATGTGATCCAAGCCATGGAAGCAGTTCAGAGGCTTCTCCAATGCAACGGG CGCCTCTTCGCATTTGTCAGGCGGTCTACATTTCCAAATGGATCTTTCAAGGCCATGGCAGAATTCTGTGATGCG AGCGCTGCTGAGCTGGCGGCTTCGAGCTTGGGAAATATCATCACCTCAGAGGGCATTCATCTTCTCGTCTCCCCG CACCTGATTGAATTATCAGACGGTCCCAGCATTATGGAAGCATTTCAAAGCTTGTCCATGGGCAGAGGTCGGAGC GGTGTAGACCAGCATCAAGCACCTGACACGACTGCATCAAGGCTCGCGGGGCCTATGGACATGAGAATTCACCCT ACCTTTGCCATGTACCCGCTCATGTTCCAACCACAGTTTGCTGCGGCTCCGACCGGAATGTCCTATGTGTTGGAT TCATTTATTCCCTCTGGAACCCAGGGCCCCATGACTCCCATGGCACCGGTCTCGCCATCGTACTCGGTCGCGGGC CCGCTGTACCACACACCTCCGTCTCCTGCTCTGACATCCCAAAACAGCTTCAGTCCATCCAGATCGCTCACCGAC TTTGGTAGGTCGGATGCTCGAAGGCAGCACGCGATGCGCATCAATAGGTCTCCGTATCATAATGTGGCGAGCCAT CACAACCATGTTGACATTCTTCGTATTCGAGATGGTATAGATGTTCGTACCACGATCATGTTACGAAATATCCCC AATAAGGTTGATCAGGCGATGCTCAAGCGAATAATTGACGAATCAAGCTGGGGCAAATACGATTTCATGTACCTA CGCATCGACTTTGCTAATGACTGCAACGTTGGCTATGCATTTATCAACTTCGTTGACGTGGGTGTTTGGCCTCCT GCTGTTGGATTTGCGCTAACTATGATGCAGCCACTTGACATTATCGACAAGTTTGTGGATGCCAGGGGCAACCAG CGCTGGAACTGTTTCAAGAGCGACAAGGTAGCAGAAATATCATATGCAACCATACAAGGCAAGGATTGTCTCGTC CAGAAGTTTCGAAATAGCTCCGTAATGCTCGAGGCACCTCATTATCGACCAAAGCTGTACTTTACTTCGAATGGC CCCATGCCAGAATTGGCCGGCCAAGAAGAGCCATTTCCAGAGCCAGACAACCAGTCCAAAATGAAAAGAAGTTGC GAAAACGCAGAGCATGTCGGCCTGTTCACTCCCAATGCAGGACAGCACTTTCGTGACGAGCAACGACGTCGGCGC TCACAATACGACAGAGGCACTCGGCTTGCGGCCCTCGAAGAATACGACTACGAAACGGCTATCCAGAACCTCTAC GGCACGCCAACATGA |
| Gene | >OphauB2|4669 ATGGCCCAAGTTCGGGAGCGCGACAATCCATCGTCGCCGAGATCCTCGTGCGGCGCGGCCGACTCTTTCAAAGGT ACACCAGAGACACGTCTGACAGCCTTTTCTCCCGAAGATGGCTCGGCCAAGTCATCCAAGCTTCTCCATGGACTT GCCCGCTCCGCTTCTGCAACACCACCTGTGGGTCGACCTCTGACCAGTTTCTGTGGCTCTGCCACTCATATCGAC AAGGATCCCTTCGTCACTCCCTCCCACCAGCCTGGTACCCGGCTGTCCCCGACTGCGTCGACCTTCAGCCCATTT TCGACATCTCTCAAAGTTGGTCGGGCCTTCGACGCTGCTCCCATCGCCGCTGCTTTGAGCAGCGACTTGGGTTTG TCTCGACATCTGCATGTATCCTCCTCTGCTCACTTGTCCGTGACCGAGGTCAATACTTGGCTAAGTGTATTTGCC TTGATGATTTACGTCCTCATGATATTGACAATACTGACCAAGCTCATCACTCCCAGGAGCTAGAAGCTCGCGGCG ATCCTCCTTGCGGAGCTCGCTTCTCAGACCCATTGGACGGCCAAGTTTGCGTTCATTTCTCGGATATTCGAGATG CACGTTCTACCACTGCCAGCGCTCGCCACGCGGGAAAAGACTGGAAGGTCGAATATCTCGATCCATCCCAGCTAG CAAAGGTGAGATTTGCCAGTTGTGGTTCTGATTCTTGTTACCCCACTAACCGGCACCTATCTTTGGCTTGGGCAG TACGGTTTGGCTTGTCGAGATTCAAAGCGATGCTCAAGTGGTCAAGTGGATGTTCTCGCCGCTGTCCCACAGGGC ACTGCACTCGATGTGATCCAAGCCATGGAAGCAGTTCAGAGGCTTCTCCAATGCAACGGGCGCCTCTTCGCATTT GTCAGGCGGTCTACATTTCCAAATGGATCTTTCAAGGCCATGGCAGAATTCTGTGATGCGAGCGCTGCTGAGCTG GCGGCTTCGAGCTTGGGAAATATCATCACCTCAGAGGTACCATCAATTTATGCTTCATTTTTCATCATTTGCATT TGTTTCCTGACTATCTTGTAAAGGGCATTCATCTTCTCGTCTCCCCGCACCTGATTGAATTATCAGACGGTCCCA GCATTATGGAAGCATTTCAAAGCTTGTCCATGGGCAGAGGTCGGAGCGGTGTAGACCAGCATCAAGCACCTGACA CGACTGCATCAAGGCTCGCGGGGCCTATGGACATGAGAATTCACCCTACCTTTGCCATGTACCCGCTCATGTTCC AACCACAGTTTGCTGCGGCTCCGACCGGAATGTCCTATGTGTTGGATTCATTTATTCCCTCTGGAACCCAGGGCC CCATGACTCCCATGGCACCGGTCTCGCCATCGTACTCGGTCGCGGGCCCGCTGTACCACACACCTCCGTCTCCTG CTCTGACATCCCAAAACAGCTTCAGTCCATCCAGATCGCTCACCGACTTTGGTAGGTCGGATGCTCGAAGGCAGC ACGCGATGCGCATCAATAGGTCTCCGTATCATAATGTGGCGAGCCATCACAACCATGTTGACATTCTTCGTATTC GAGATGGTATAGATGTTCGTACCACGGTCTGTCTCACTGTTCACTTGTCTTGGTGGCAAAATAAATCGACTCACA TTGACACTAGATCATGTTACGAAATATCCCCAATAAGGTTGATCAGGCGATGCTCAAGCGAATAATTGACGAATC AAGCTGGGGCAAATACGATTTCATGTACCTACGCATCGACTTTGCTAATGACTGCAAGTCAGTAGCAGACTATTT CCGTCCTCTAGTTCTAATGGGCTGACTGTATTGAAACAGCGTTGGCTATGCATTTATCAACTTCGTTGACGTGGG TGTTTGGCCTCCTGCTGTTGGATTTGCGCTAACTATGATGCAGCCACTTGACATTATCGACGTTGGTCCAATCCC CCCCCCTTTTTTTTTCATCAACACAACGATTTGCATAAGCTAACTCTGGAGAAGTTTGTGGATGCCAGGGGCAAC CAGCGCTGGTAAGTTCAAATGCACTATTGAAAATACATTTTAAATTAACATGCGTAGGAACTGTTTCAAGAGCGA CAAGGTAGCAGAAATATCATATGCAAGTGAGTTGCTCGTTGCTGCAATATAGTATACAATGATGACGAACAGGAT GCAGCCATACAAGGCAAGGATTGTCTCGTCCAGAAGTTTCGAAATAGCTCCGTAATGCTCGAGGCACCTCATTAT CGACCAAAGGTGAGTCTATAATGAAGCATTGGAAAATGCTCCCAAGTGGCTGCTGGTATGCTAACAATATGGATG TTTTAGCTGTACTTTACTTCGAATGGCCCCATGCCAGAATTGGCCGGCCAAGAAGAGCCATTTCCAGAGCCAGAC AACCAGTCCAAAATGAAAAGAAGTTGCGAAAACGCAGAGCATGTCGGCAAGTACTTTGATTAATTCATTTACGCT GCGTAGTACCCAGGCAGGGCTAACATTATTCAGGCCTGTTCACTCCCAATGCAGGACAGCACTTTCGTGACGAGC AACGACGTCGGCGCTCACAATACGACAGAGGCACTCGGCTTGCGGCCCTCGAAGAATACGACTACGAAACGGCTA TCCAGAACCTCTACGGCACGCCAACATGA |