Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauB2\|4618
Gene name
Location	Contig_31:43475..44591
Strand	-
Gene length (bp)	1116
Transcript length (bp)	1116
Coding sequence length (bp)	1116
Protein length (aa)	372

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04000	Sas10_Utp3	Sas10/Utp3/C1D family	3.4E-17	11	96

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q09713\|YA36_SCHPO	Uncharacterized protein C18B11.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC18B11.06 PE=1 SV=1	11	358	8.0E-26
sp\|P40079\|LCP5_YEAST	U3 small nucleolar ribonucleoprotein protein LCP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LCP5 PE=1 SV=1	7	303	8.0E-15
sp\|Q2KII6\|NGDN_BOVIN	Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1	1	116	2.0E-10
sp\|Q8NEJ9\|NGDN_HUMAN	Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1	37	116	3.0E-09
sp\|Q4KLC4\|NGDNA_XENLA	Neuroguidin-A OS=Xenopus laevis GN=ngdn-a PE=1 SV=1	37	285	6.0E-09

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q09713\|YA36_SCHPO	Uncharacterized protein C18B11.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC18B11.06 PE=1 SV=1	11	358	8.0E-26
sp\|P40079\|LCP5_YEAST	U3 small nucleolar ribonucleoprotein protein LCP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LCP5 PE=1 SV=1	7	303	8.0E-15
sp\|Q2KII6\|NGDN_BOVIN	Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1	1	116	2.0E-10
sp\|Q8NEJ9\|NGDN_HUMAN	Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1	37	116	3.0E-09
sp\|Q4KLC4\|NGDNA_XENLA	Neuroguidin-A OS=Xenopus laevis GN=ngdn-a PE=1 SV=1	37	285	6.0E-09
sp\|Q5M985\|NGDNB_XENLA	Neuroguidin-B (Fragment) OS=Xenopus laevis GN=ngdn-b PE=1 SV=1	37	285	7.0E-09
sp\|Q6PFJ1\|NGDN_DANRE	Neuroguidin OS=Danio rerio GN=ngdn PE=2 SV=1	10	275	2.0E-08
sp\|Q9DB96\|NGDN_MOUSE	Neuroguidin OS=Mus musculus GN=Ngdn PE=1 SV=1	37	116	2.0E-08
sp\|Q28IV8\|NGDN_XENTR	Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=1	37	285	2.0E-08

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 22	0.5

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauB2\|4618 MAAPTTLSALLTSLSQSLSLAQEATPKLEEYEHPPNGISLLDVKNDLLLSYLQNLVFLILLKLRNAKSDGNSTEA DEEIPEAVRLKLVELRVYLEKGVRPLEEKLKFSIDRFLRTAQDAQREQQRRSTKSKAKGKAEAKDYEPDESRSDR DSDGSGFESDDAESPVIAAPRPGTLIDVVSIKPAENQDGPPGIYRPPRRERKVMETTRPREKAVRRPLRSHTMDE FISAELSTAPLAEPSIGTTIVQGGRRMKTSQERKIEEERREYEETNLVRLPKASKKERAKMNQQAGRSGRMQFGG EDWRELGEGVDRIDRLTKRKGPAGSNVRALLEKSRKRGMDTTDGPRGSGQGVEIGERFRKKVKTMKRSKRR*
Coding	>OphauB2\|4618 ATGGCAGCGCCCACTACCTTGTCAGCCCTTCTAACGTCGCTCAGCCAGTCATTGTCGCTTGCTCAGGAGGCGACG CCAAAACTGGAAGAATATGAGCACCCCCCAAATGGCATCTCGCTGCTCGACGTCAAGAACGACTTGCTGCTATCT TACTTGCAAAATCTTGTTTTTCTTATCCTTCTCAAACTACGAAATGCAAAGTCTGACGGCAATTCGACCGAGGCC GATGAAGAGATTCCCGAAGCCGTTCGCTTGAAGCTTGTTGAGCTGCGAGTCTATCTGGAAAAGGGTGTTCGGCCG TTGGAGGAAAAGCTCAAGTTCTCCATAGACCGGTTTCTACGGACAGCTCAAGATGCACAACGCGAGCAGCAGAGA AGGAGCACAAAATCAAAAGCCAAGGGCAAAGCCGAGGCCAAGGACTATGAGCCTGATGAGTCTAGGTCGGATCGG GATAGCGATGGATCCGGTTTTGAAAGCGATGATGCTGAAAGCCCAGTAATTGCCGCACCTAGACCTGGAACCTTG ATAGACGTTGTCTCCATCAAGCCAGCAGAAAACCAAGACGGTCCCCCCGGTATCTATCGCCCACCGCGACGAGAA CGAAAAGTCATGGAGACGACGCGACCCCGCGAAAAAGCCGTTCGCCGACCTCTGCGCTCTCATACCATGGACGAG TTTATCAGCGCAGAGCTCTCTACCGCGCCGCTAGCCGAGCCCAGCATCGGCACAACGATTGTGCAGGGCGGACGC AGAATGAAGACGTCTCAGGAGCGCAAGATTGAAGAAGAGCGCCGCGAGTACGAAGAAACAAACCTGGTGCGCTTA CCCAAGGCCAGCAAGAAGGAGCGCGCCAAGATGAACCAGCAGGCGGGGCGCAGTGGGCGCATGCAGTTTGGCGGC GAGGACTGGCGCGAGTTGGGCGAAGGCGTTGACCGCATCGACCGCCTAACCAAGCGCAAGGGTCCGGCGGGTAGC AATGTGCGTGCTCTGCTGGAAAAAAGCCGCAAACGTGGCATGGACACGACGGACGGGCCCCGAGGCAGCGGCCAG GGAGTCGAGATTGGAGAGAGATTTCGCAAAAAGGTCAAGACGATGAAGAGGAGCAAAAGACGGTAG
Transcript	>OphauB2\|4618 ATGGCAGCGCCCACTACCTTGTCAGCCCTTCTAACGTCGCTCAGCCAGTCATTGTCGCTTGCTCAGGAGGCGACG CCAAAACTGGAAGAATATGAGCACCCCCCAAATGGCATCTCGCTGCTCGACGTCAAGAACGACTTGCTGCTATCT TACTTGCAAAATCTTGTTTTTCTTATCCTTCTCAAACTACGAAATGCAAAGTCTGACGGCAATTCGACCGAGGCC GATGAAGAGATTCCCGAAGCCGTTCGCTTGAAGCTTGTTGAGCTGCGAGTCTATCTGGAAAAGGGTGTTCGGCCG TTGGAGGAAAAGCTCAAGTTCTCCATAGACCGGTTTCTACGGACAGCTCAAGATGCACAACGCGAGCAGCAGAGA AGGAGCACAAAATCAAAAGCCAAGGGCAAAGCCGAGGCCAAGGACTATGAGCCTGATGAGTCTAGGTCGGATCGG GATAGCGATGGATCCGGTTTTGAAAGCGATGATGCTGAAAGCCCAGTAATTGCCGCACCTAGACCTGGAACCTTG ATAGACGTTGTCTCCATCAAGCCAGCAGAAAACCAAGACGGTCCCCCCGGTATCTATCGCCCACCGCGACGAGAA CGAAAAGTCATGGAGACGACGCGACCCCGCGAAAAAGCCGTTCGCCGACCTCTGCGCTCTCATACCATGGACGAG TTTATCAGCGCAGAGCTCTCTACCGCGCCGCTAGCCGAGCCCAGCATCGGCACAACGATTGTGCAGGGCGGACGC AGAATGAAGACGTCTCAGGAGCGCAAGATTGAAGAAGAGCGCCGCGAGTACGAAGAAACAAACCTGGTGCGCTTA CCCAAGGCCAGCAAGAAGGAGCGCGCCAAGATGAACCAGCAGGCGGGGCGCAGTGGGCGCATGCAGTTTGGCGGC GAGGACTGGCGCGAGTTGGGCGAAGGCGTTGACCGCATCGACCGCCTAACCAAGCGCAAGGGTCCGGCGGGTAGC AATGTGCGTGCTCTGCTGGAAAAAAGCCGCAAACGTGGCATGGACACGACGGACGGGCCCCGAGGCAGCGGCCAG GGAGTCGAGATTGGAGAGAGATTTCGCAAAAAGGTCAAGACGATGAAGAGGAGCAAAAGACGGTAG
Gene	>OphauB2\|4618 ATGGCAGCGCCCACTACCTTGTCAGCCCTTCTAACGTCGCTCAGCCAGTCATTGTCGCTTGCTCAGGAGGCGACG CCAAAACTGGAAGAATATGAGCACCCCCCAAATGGCATCTCGCTGCTCGACGTCAAGAACGACTTGCTGCTATCT TACTTGCAAAATCTTGTTTTTCTTATCCTTCTCAAACTACGAAATGCAAAGTCTGACGGCAATTCGACCGAGGCC GATGAAGAGATTCCCGAAGCCGTTCGCTTGAAGCTTGTTGAGCTGCGAGTCTATCTGGAAAAGGGTGTTCGGCCG TTGGAGGAAAAGCTCAAGTTCTCCATAGACCGGTTTCTACGGACAGCTCAAGATGCACAACGCGAGCAGCAGAGA AGGAGCACAAAATCAAAAGCCAAGGGCAAAGCCGAGGCCAAGGACTATGAGCCTGATGAGTCTAGGTCGGATCGG GATAGCGATGGATCCGGTTTTGAAAGCGATGATGCTGAAAGCCCAGTAATTGCCGCACCTAGACCTGGAACCTTG ATAGACGTTGTCTCCATCAAGCCAGCAGAAAACCAAGACGGTCCCCCCGGTATCTATCGCCCACCGCGACGAGAA CGAAAAGTCATGGAGACGACGCGACCCCGCGAAAAAGCCGTTCGCCGACCTCTGCGCTCTCATACCATGGACGAG TTTATCAGCGCAGAGCTCTCTACCGCGCCGCTAGCCGAGCCCAGCATCGGCACAACGATTGTGCAGGGCGGACGC AGAATGAAGACGTCTCAGGAGCGCAAGATTGAAGAAGAGCGCCGCGAGTACGAAGAAACAAACCTGGTGCGCTTA CCCAAGGCCAGCAAGAAGGAGCGCGCCAAGATGAACCAGCAGGCGGGGCGCAGTGGGCGCATGCAGTTTGGCGGC GAGGACTGGCGCGAGTTGGGCGAAGGCGTTGACCGCATCGACCGCCTAACCAAGCGCAAGGGTCCGGCGGGTAGC AATGTGCGTGCTCTGCTGGAAAAAAGCCGCAAACGTGGCATGGACACGACGGACGGGCCCCGAGGCAGCGGCCAG GGAGTCGAGATTGGAGAGAGATTTCGCAAAAAGGTCAAGACGATGAAGAGGAGCAAAAGACGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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