© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|4562 |
| Gene name | |
| Location | Contig_30:119236..120043 |
| Strand | + |
| Gene length (bp) | 807 |
| Transcript length (bp) | 807 |
| Coding sequence length (bp) | 807 |
| Protein length (aa) | 269 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04641 | Rtf2 | Rtf2 RING-finger | 8.0E-46 | 1 | 256 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10154|RTF2_SCHPO | Replication termination factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rtf2 PE=1 SV=1 | 1 | 213 | 1.0E-24 |
| sp|Q0VCR1|RTF2_BOVIN | Protein RTF2 homolog OS=Bos taurus GN=RTFDC1 PE=2 SV=1 | 1 | 179 | 5.0E-19 |
| sp|Q4R594|RTF2_MACFA | Protein RTF2 homolog OS=Macaca fascicularis GN=RTFDC1 PE=2 SV=1 | 1 | 179 | 6.0E-19 |
| sp|A5GFW7|RTF2_PIG | Protein RTF2 homolog OS=Sus scrofa GN=RTFDC1 PE=3 SV=1 | 1 | 179 | 7.0E-19 |
| sp|Q9BY42|RTF2_HUMAN | Protein RTF2 homolog OS=Homo sapiens GN=RTFDC1 PE=1 SV=3 | 1 | 179 | 8.0E-19 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10154|RTF2_SCHPO | Replication termination factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rtf2 PE=1 SV=1 | 1 | 213 | 1.0E-24 |
| sp|Q0VCR1|RTF2_BOVIN | Protein RTF2 homolog OS=Bos taurus GN=RTFDC1 PE=2 SV=1 | 1 | 179 | 5.0E-19 |
| sp|Q4R594|RTF2_MACFA | Protein RTF2 homolog OS=Macaca fascicularis GN=RTFDC1 PE=2 SV=1 | 1 | 179 | 6.0E-19 |
| sp|A5GFW7|RTF2_PIG | Protein RTF2 homolog OS=Sus scrofa GN=RTFDC1 PE=3 SV=1 | 1 | 179 | 7.0E-19 |
| sp|Q9BY42|RTF2_HUMAN | Protein RTF2 homolog OS=Homo sapiens GN=RTFDC1 PE=1 SV=3 | 1 | 179 | 8.0E-19 |
| sp|Q5ZJN1|RTF2_CHICK | Protein RTF2 homolog OS=Gallus gallus GN=RTFDC1 PE=2 SV=1 | 1 | 178 | 8.0E-19 |
| sp|Q3T1J8|RTF2_RAT | Protein RTF2 homolog OS=Rattus norvegicus GN=Rtfdc1 PE=2 SV=1 | 1 | 179 | 8.0E-19 |
| sp|Q5R9P9|RTF2_PONAB | Protein RTF2 homolog OS=Pongo abelii GN=RTFDC1 PE=2 SV=1 | 1 | 179 | 1.0E-18 |
| sp|Q99K95|RTF2_MOUSE | Protein RTF2 homolog OS=Mus musculus GN=Rtfdc1 PE=1 SV=1 | 1 | 179 | 2.0E-18 |
| sp|Q54IS6|RTF2_DICDI | Protein RTF2 homolog OS=Dictyostelium discoideum GN=rtfdc1 PE=3 SV=1 | 1 | 174 | 8.0E-11 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 62 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|4562 MGNDGGSIPKRRELVKNASRPPTVSELKATALESLGHAWTHCGLSGAPLDLENAVSDWRGRLYNYEAILEALSSS SETADPSPASLGITSLRDVAKLKFSRNGDEWSCPISMKALGPATKAVYLVPCGHVFSEVAMTEIRESACPVCGQE FGSDNVIPLLAVSGKEIERLEKRLDKLRLEGLGHMLKKDRWEKKKKRKRKEENMEEIKGQEAKAKCDDKQTEQKP ASRLSGINNAMAASLTAKVMAEQEGMMKRRKLVADGGNSTAKG* |
| Coding | >OphauB2|4562 ATGGGCAACGACGGTGGTTCTATTCCCAAACGACGCGAGCTCGTCAAAAATGCTTCACGTCCGCCGACAGTGTCT GAACTCAAGGCTACAGCACTCGAATCCCTGGGCCACGCCTGGACACACTGCGGGCTGAGCGGTGCTCCCCTGGAT TTGGAAAACGCCGTTTCCGACTGGCGCGGCCGCCTTTACAACTATGAAGCCATACTTGAAGCGCTCAGCTCCTCG AGCGAAACGGCTGACCCGAGTCCCGCGTCGCTAGGCATTACGTCACTGCGAGACGTGGCGAAGCTCAAGTTTTCA AGAAACGGCGATGAATGGTCTTGCCCCATCTCCATGAAGGCGCTTGGCCCGGCCACCAAGGCGGTCTACCTAGTG CCTTGTGGTCACGTCTTTTCAGAGGTGGCCATGACAGAGATACGGGAGAGTGCTTGTCCGGTGTGCGGACAAGAG TTTGGCAGCGACAATGTCATTCCTCTCCTTGCAGTCTCGGGCAAGGAGATTGAGCGGTTGGAGAAGCGGTTGGAC AAGCTGCGATTAGAGGGCCTTGGCCACATGCTGAAGAAGGACAGATGGGAAAAGAAGAAGAAGAGAAAGCGCAAA GAGGAAAACATGGAAGAAATTAAAGGCCAAGAGGCAAAAGCCAAATGCGACGACAAGCAGACAGAGCAGAAGCCG GCGTCAAGATTAAGTGGCATCAACAACGCCATGGCGGCTTCTCTGACAGCAAAGGTCATGGCAGAGCAAGAGGGG ATGATGAAGCGGCGGAAATTAGTGGCCGACGGCGGCAACTCGACTGCGAAAGGCTGA |
| Transcript | >OphauB2|4562 ATGGGCAACGACGGTGGTTCTATTCCCAAACGACGCGAGCTCGTCAAAAATGCTTCACGTCCGCCGACAGTGTCT GAACTCAAGGCTACAGCACTCGAATCCCTGGGCCACGCCTGGACACACTGCGGGCTGAGCGGTGCTCCCCTGGAT TTGGAAAACGCCGTTTCCGACTGGCGCGGCCGCCTTTACAACTATGAAGCCATACTTGAAGCGCTCAGCTCCTCG AGCGAAACGGCTGACCCGAGTCCCGCGTCGCTAGGCATTACGTCACTGCGAGACGTGGCGAAGCTCAAGTTTTCA AGAAACGGCGATGAATGGTCTTGCCCCATCTCCATGAAGGCGCTTGGCCCGGCCACCAAGGCGGTCTACCTAGTG CCTTGTGGTCACGTCTTTTCAGAGGTGGCCATGACAGAGATACGGGAGAGTGCTTGTCCGGTGTGCGGACAAGAG TTTGGCAGCGACAATGTCATTCCTCTCCTTGCAGTCTCGGGCAAGGAGATTGAGCGGTTGGAGAAGCGGTTGGAC AAGCTGCGATTAGAGGGCCTTGGCCACATGCTGAAGAAGGACAGATGGGAAAAGAAGAAGAAGAGAAAGCGCAAA GAGGAAAACATGGAAGAAATTAAAGGCCAAGAGGCAAAAGCCAAATGCGACGACAAGCAGACAGAGCAGAAGCCG GCGTCAAGATTAAGTGGCATCAACAACGCCATGGCGGCTTCTCTGACAGCAAAGGTCATGGCAGAGCAAGAGGGG ATGATGAAGCGGCGGAAATTAGTGGCCGACGGCGGCAACTCGACTGCGAAAGGCTGA |
| Gene | >OphauB2|4562 ATGGGCAACGACGGTGGTTCTATTCCCAAACGACGCGAGCTCGTCAAAAATGCTTCACGTCCGCCGACAGTGTCT GAACTCAAGGCTACAGCACTCGAATCCCTGGGCCACGCCTGGACACACTGCGGGCTGAGCGGTGCTCCCCTGGAT TTGGAAAACGCCGTTTCCGACTGGCGCGGCCGCCTTTACAACTATGAAGCCATACTTGAAGCGCTCAGCTCCTCG AGCGAAACGGCTGACCCGAGTCCCGCGTCGCTAGGCATTACGTCACTGCGAGACGTGGCGAAGCTCAAGTTTTCA AGAAACGGCGATGAATGGTCTTGCCCCATCTCCATGAAGGCGCTTGGCCCGGCCACCAAGGCGGTCTACCTAGTG CCTTGTGGTCACGTCTTTTCAGAGGTGGCCATGACAGAGATACGGGAGAGTGCTTGTCCGGTGTGCGGACAAGAG TTTGGCAGCGACAATGTCATTCCTCTCCTTGCAGTCTCGGGCAAGGAGATTGAGCGGTTGGAGAAGCGGTTGGAC AAGCTGCGATTAGAGGGCCTTGGCCACATGCTGAAGAAGGACAGATGGGAAAAGAAGAAGAAGAGAAAGCGCAAA GAGGAAAACATGGAAGAAATTAAAGGCCAAGAGGCAAAAGCCAAATGCGACGACAAGCAGACAGAGCAGAAGCCG GCGTCAAGATTAAGTGGCATCAACAACGCCATGGCGGCTTCTCTGACAGCAAAGGTCATGGCAGAGCAAGAGGGG ATGATGAAGCGGCGGAAATTAGTGGCCGACGGCGGCAACTCGACTGCGAAAGGCTGA |