Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|4539
Gene name
LocationContig_30:54322..55011
Strand+
Gene length (bp)689
Transcript length (bp)576
Coding sequence length (bp)576
Protein length (aa) 192

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00472 RF-1 RF-1 domain 1.6E-13 63 186

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q12322|YO114_YEAST Putative uncharacterized protein YOL114C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL114C PE=4 SV=1 42 186 3.0E-15
sp|Q9HDZ3|MUG82_SCHPO Meiotically up-regulated gene 82 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug82 PE=1 SV=1 48 150 4.0E-07

GO

GO Term Description Terminal node
GO:0006415 translational termination Yes
GO:0003747 translation release factor activity Yes
GO:0016043 cellular component organization No
GO:0003676 nucleic acid binding No
GO:0097159 organic cyclic compound binding No
GO:0022411 cellular component disassembly No
GO:0090079 translation regulator activity, nucleic acid binding No
GO:0043933 protein-containing complex organization No
GO:1901363 heterocyclic compound binding No
GO:0071840 cellular component organization or biogenesis No
GO:0032984 protein-containing complex disassembly No
GO:0008150 biological_process No
GO:0008079 translation termination factor activity No
GO:0008135 translation factor activity, RNA binding No
GO:0005488 binding No
GO:0045182 translation regulator activity No
GO:0003674 molecular_function No
GO:0009987 cellular process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|4539
MALHVPRRVLRPWMPRRGLKPLVFARFRRHEAFDARLDHEALAESRSWFEQLDQAQLPKGVTTYARSSGPGGQHV
NKTESKAVTAVSVQELQSFLPKSLHIGIRESKYYTASSDSLTFHAQSHRSRGANVEENRRKLMEELVRIYRANTP
SPTSCEKKKKHEAIEHKFHASRLKQKKLSSMKKQSRKGAIS*
Coding >OphauB2|4539
ATGGCACTGCACGTGCCGCGTAGAGTCTTGCGGCCATGGATGCCCAGACGAGGGCTCAAGCCCTTGGTATTCGCG
CGATTCCGCAGGCACGAGGCCTTTGATGCCAGACTCGATCATGAGGCTCTCGCTGAGTCGCGGTCCTGGTTTGAA
CAGCTGGACCAAGCCCAGCTTCCCAAGGGCGTTACCACATATGCCAGATCAAGCGGCCCTGGTGGGCAGCACGTC
AACAAGACCGAGTCCAAGGCCGTGACAGCTGTCTCGGTCCAGGAACTGCAATCCTTTCTGCCCAAGTCTCTGCAT
ATTGGTATACGCGAATCAAAATACTACACTGCTAGCAGTGACTCTCTCACCTTCCATGCCCAAAGCCACAGGTCC
CGTGGCGCAAATGTCGAGGAGAATAGAAGGAAACTCATGGAAGAGCTGGTCCGTATCTATCGAGCCAACACACCA
TCGCCCACAAGCTGTGAAAAGAAGAAGAAGCACGAGGCCATTGAACACAAATTCCATGCATCGAGACTGAAGCAG
AAGAAGCTCTCTAGCATGAAGAAACAGTCTCGCAAGGGCGCGATATCATAA
Transcript >OphauB2|4539
ATGGCACTGCACGTGCCGCGTAGAGTCTTGCGGCCATGGATGCCCAGACGAGGGCTCAAGCCCTTGGTATTCGCG
CGATTCCGCAGGCACGAGGCCTTTGATGCCAGACTCGATCATGAGGCTCTCGCTGAGTCGCGGTCCTGGTTTGAA
CAGCTGGACCAAGCCCAGCTTCCCAAGGGCGTTACCACATATGCCAGATCAAGCGGCCCTGGTGGGCAGCACGTC
AACAAGACCGAGTCCAAGGCCGTGACAGCTGTCTCGGTCCAGGAACTGCAATCCTTTCTGCCCAAGTCTCTGCAT
ATTGGTATACGCGAATCAAAATACTACACTGCTAGCAGTGACTCTCTCACCTTCCATGCCCAAAGCCACAGGTCC
CGTGGCGCAAATGTCGAGGAGAATAGAAGGAAACTCATGGAAGAGCTGGTCCGTATCTATCGAGCCAACACACCA
TCGCCCACAAGCTGTGAAAAGAAGAAGAAGCACGAGGCCATTGAACACAAATTCCATGCATCGAGACTGAAGCAG
AAGAAGCTCTCTAGCATGAAGAAACAGTCTCGCAAGGGCGCGATATCATAA
Gene >OphauB2|4539
ATGGCACTGCACGTGCCGCGTAGAGTCTTGCGGCCATGGATGCCCAGACGAGGGCTCAAGCCCTTGGTATTCGCG
CGATTCCGCAGGCACGAGGCCTTTGATGCCAGACTCGATCATGAGGCTCTCGCTGAGTCGCGGTCCTGGTTTGAA
CAGCTGGACCAAGCCCAGCTTCCCAAGGGCGTTACCACATATGCCAGATCAAGCGGCCCTGGTGGGCAGCACGTC
AACAAGTACGATGCCAGACCCAACAAGACTTTGGCTACAGACTGACGGGCGTGCAAAGGACCGAGTCCAAGGCCG
TGACAGCTGTCTCGGTCCAGGAACTGCAATCCTTTCTGCCCAAGTCTCTGCATATTGGTATACGCGAATCAAAAT
ACTACACTGCTAGCAGTGACTCTCTCACCTTCCATGCCCAAAGCCACAGGTCCCGTGGCGCAAATGTCGAGGAGA
ATAGAAGGAAACTCATGGAAGAGCTGGTCCGTATCTATCGAGCCAACACACCATCGCCCACAAGCTGTGAAAAGA
AGAAGAAGCACGAGGCCATGTGAGTTGCATGCCTGCCATGTGCCATAGCCATGGACTCTGACCAATCTCCTTGCC
CCAGTGAACACAAATTCCATGCATCGAGACTGAAGCAGAAGAAGCTCTCTAGCATGAAGAAACAGTCTCGCAAGG
GCGCGATATCATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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