Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauB2|4538
Gene name
LocationContig_30:51022..53696
Strand-
Gene length (bp)2674
Transcript length (bp)2472
Coding sequence length (bp)2472
Protein length (aa) 824

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.8E-10 356 419
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.0E-07 351 431

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q10145|YAS9_SCHPO Uncharacterized RNA-binding protein C3H8.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H8.09c PE=3 SV=1 324 728 3.0E-31
sp|P38996|NAB3_YEAST Nuclear polyadenylated RNA-binding protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAB3 PE=1 SV=1 328 434 8.0E-11
sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana GN=RS2Z32 PE=1 SV=1 354 434 1.0E-07
sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana GN=RS2Z33 PE=1 SV=1 354 432 2.0E-07
sp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 SV=2 356 527 7.0E-07
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Swissprot ID Swissprot Description Start End E-value
sp|Q10145|YAS9_SCHPO Uncharacterized RNA-binding protein C3H8.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H8.09c PE=3 SV=1 324 728 3.0E-31
sp|P38996|NAB3_YEAST Nuclear polyadenylated RNA-binding protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAB3 PE=1 SV=1 328 434 8.0E-11
sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana GN=RS2Z32 PE=1 SV=1 354 434 1.0E-07
sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana GN=RS2Z33 PE=1 SV=1 354 432 2.0E-07
sp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 SV=2 356 527 7.0E-07
sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis elegans GN=rsp-1 PE=3 SV=1 354 424 9.0E-07
sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6 PE=1 SV=2 355 424 1.0E-06
sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2 SV=1 355 424 2.0E-06
sp|G3V6S8|SRSF6_RAT Serine/arginine-rich splicing factor 6 OS=Rattus norvegicus GN=Srsf6 PE=1 SV=1 355 424 4.0E-06
sp|Q3TWW8|SRSF6_MOUSE Serine/arginine-rich splicing factor 6 OS=Mus musculus GN=Srsf6 PE=1 SV=1 355 424 4.0E-06
sp|Q9UKM9|RALY_HUMAN RNA-binding protein Raly OS=Homo sapiens GN=RALY PE=1 SV=1 354 423 4.0E-06
sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4 PE=2 SV=1 355 424 4.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003676 nucleic acid binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 55 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauB2|4538
MTEPKAQVQATANLSPVSPSPLHTAAPLVVPALQQTVDTIDAMVAAVAAPTASANENNRDAAVDFVDDDSLEGAY
GMDNTNASDTLPAPPPEADANDDYAKSFDSPVEPDQGDGQNGQLHNVPLSSSSMPPPDSSHISLPLESRPDASPP
ATGSSRHSQKPLHQAGSELAPESAVESGSVAADSPGSSVDLQKLVADLTAQPTNSSSTPVATQSKQAVDVVPLNS
SASLPSSSSLPPRPPQPDTQSYSSQHLPSTASSNAPMPNGSLVPSTSGHPPAAIASTEAMAIAPTFATVPNATPA
SRSMNAVACPPQTAPGYPVNGASNTEYENQWDRFVADERQYMSDAKWDRFPEGSRLFIGNLSSDKVSKRDVFEVF
HKFGRLAQISLKSAYGFVQYHDVEEGRRAMEHLQGIEIKGRRIHLEVSRVQEKSKKDRGRSPDRARGRDSGRRGD
KHHGGRDDYRPGRNHSPRRHDHHHGRDGGPSRDRAFHDGGRGARGRSRSPVYGRNDQDSYRRRSPSPYGRSRQEA
EVDLPHRFGADVPDVQIILQPDVNRDFGAWVEGAFKAKGLKTEVMYLHPRFSRDHVIQRQAAEGVHGVVDLDVHA
QSVGRIPVQAFKRSGGSSKVRFDQYINLDPGTAAEVILRAKSMAAATYGQSYASGSGYGAPYNGAAQHAVNYGAN
PYAASQQQQQQQQQQQQQSQQQPVAPSAADIAGLMGQLDNVTLQRLLSSIQGSAPSHGQGGVAAVPGGYGVPAVA
QTPTSQPVDIQTILGSLGGNASTHQHAASHASYGTTYGAQSSVASNAGVHAASGGQDTTAQVQHIMAHLSRFR*
Coding >OphauB2|4538
ATGACGGAGCCAAAAGCGCAGGTCCAGGCCACTGCCAACTTGTCTCCTGTGTCACCCTCTCCCCTCCACACGGCT
GCCCCCCTGGTGGTGCCAGCCCTGCAGCAAACAGTTGACACCATCGACGCCATGGTTGCTGCCGTCGCTGCTCCA
ACGGCCAGTGCCAACGAAAACAACCGTGATGCGGCTGTTGATTTCGTAGATGATGACAGCTTGGAAGGTGCTTAC
GGCATGGACAACACAAACGCTTCCGATACCCTTCCAGCCCCTCCGCCAGAGGCCGATGCGAACGATGATTATGCC
AAATCTTTCGACTCACCTGTCGAGCCAGACCAAGGTGATGGGCAGAACGGGCAATTGCACAATGTACCATTGTCG
TCGTCGTCAATGCCACCGCCAGACTCGAGCCATATTTCGCTGCCCCTCGAGTCCCGTCCAGATGCCTCTCCCCCG
GCCACCGGCTCCTCGCGCCACTCCCAAAAGCCTTTGCACCAAGCTGGCTCCGAGCTCGCACCCGAGTCCGCTGTC
GAGTCTGGCTCGGTAGCTGCCGACTCGCCAGGCTCCTCAGTCGACCTCCAGAAGCTTGTGGCTGATCTGACTGCC
CAGCCTACAAACTCTTCCTCGACGCCTGTTGCTACTCAGTCTAAACAAGCTGTGGATGTCGTCCCTTTGAACTCT
TCCGCCTCTTTGCCATCATCCTCATCTCTGCCCCCGCGGCCTCCGCAGCCGGATACCCAATCGTATTCATCGCAG
CATTTGCCCTCGACAGCCAGCTCCAATGCGCCCATGCCCAATGGAAGCCTTGTACCATCAACATCTGGGCATCCC
CCTGCTGCTATTGCTTCTACTGAAGCCATGGCTATCGCCCCCACATTTGCTACCGTACCGAACGCAACTCCAGCT
TCCAGATCAATGAATGCCGTTGCCTGTCCGCCCCAGACGGCACCAGGGTACCCCGTCAACGGTGCATCCAATACC
GAGTATGAGAATCAATGGGATCGATTTGTCGCTGATGAACGACAATACATGTCGGATGCCAAATGGGACCGTTTC
CCAGAAGGGTCCCGTCTCTTTATCGGCAATCTTTCTAGTGACAAAGTTTCGAAGCGCGACGTCTTTGAAGTATTC
CACAAGTTCGGCAGGCTCGCGCAGATATCTCTAAAATCCGCCTACGGCTTTGTTCAGTACCATGATGTCGAAGAG
GGCCGACGCGCCATGGAACATTTGCAGGGCATTGAGATTAAGGGACGCCGCATCCATCTCGAGGTCTCTCGGGTC
CAGGAAAAGTCCAAAAAAGACCGCGGCCGCAGCCCTGACAGGGCAAGGGGACGCGATTCTGGTCGCAGAGGTGAT
AAACATCACGGCGGTCGCGATGACTACCGGCCGGGTCGCAATCACTCGCCTCGTCGTCATGATCATCACCATGGA
CGCGACGGCGGCCCATCTCGTGACCGCGCCTTTCATGACGGTGGCCGAGGTGCCCGTGGCCGCTCACGGTCGCCT
GTATATGGACGCAACGACCAAGACTCTTATAGACGTCGTAGCCCCAGTCCATATGGCAGGTCGCGGCAAGAGGCC
GAGGTGGATCTTCCTCACAGATTCGGTGCTGATGTGCCCGATGTGCAGATTATATTGCAGCCAGACGTGAACCGT
GACTTTGGCGCATGGGTCGAAGGTGCTTTCAAGGCCAAGGGACTCAAGACCGAGGTCATGTACCTCCATCCGCGA
TTTTCCAGAGATCACGTTATTCAGAGACAGGCAGCTGAAGGTGTTCACGGCGTCGTTGACCTGGACGTGCACGCG
CAATCTGTTGGGCGCATCCCTGTTCAAGCCTTCAAGCGGTCTGGTGGAAGTAGTAAGGTTCGCTTCGACCAGTAC
ATCAACCTAGATCCGGGCACTGCTGCAGAGGTCATTTTGCGTGCCAAGTCAATGGCCGCGGCTACCTATGGGCAA
AGCTACGCCTCGGGGAGCGGATACGGCGCTCCGTATAACGGTGCAGCCCAACACGCTGTCAATTATGGTGCCAAC
CCTTACGCAGCATCGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGTCACAGCAGCAGCCCGTTGCT
CCAAGCGCCGCTGACATTGCTGGCTTGATGGGCCAGTTGGATAATGTGACGCTCCAGCGGCTTCTGTCCTCTATC
CAAGGGTCGGCTCCATCTCACGGCCAAGGTGGCGTTGCCGCTGTACCCGGAGGCTACGGCGTACCTGCTGTGGCT
CAAACTCCGACTAGTCAACCAGTCGATATTCAGACTATCCTGGGCAGCCTCGGTGGCAATGCCTCCACGCATCAG
CATGCCGCATCCCATGCGTCGTATGGCACCACGTATGGCGCTCAGTCCTCAGTGGCCTCAAATGCGGGCGTGCAT
GCGGCGTCGGGAGGTCAAGATACGACGGCACAGGTGCAGCATATCATGGCGCACCTCTCGCGCTTCAGATAG
Transcript >OphauB2|4538
ATGACGGAGCCAAAAGCGCAGGTCCAGGCCACTGCCAACTTGTCTCCTGTGTCACCCTCTCCCCTCCACACGGCT
GCCCCCCTGGTGGTGCCAGCCCTGCAGCAAACAGTTGACACCATCGACGCCATGGTTGCTGCCGTCGCTGCTCCA
ACGGCCAGTGCCAACGAAAACAACCGTGATGCGGCTGTTGATTTCGTAGATGATGACAGCTTGGAAGGTGCTTAC
GGCATGGACAACACAAACGCTTCCGATACCCTTCCAGCCCCTCCGCCAGAGGCCGATGCGAACGATGATTATGCC
AAATCTTTCGACTCACCTGTCGAGCCAGACCAAGGTGATGGGCAGAACGGGCAATTGCACAATGTACCATTGTCG
TCGTCGTCAATGCCACCGCCAGACTCGAGCCATATTTCGCTGCCCCTCGAGTCCCGTCCAGATGCCTCTCCCCCG
GCCACCGGCTCCTCGCGCCACTCCCAAAAGCCTTTGCACCAAGCTGGCTCCGAGCTCGCACCCGAGTCCGCTGTC
GAGTCTGGCTCGGTAGCTGCCGACTCGCCAGGCTCCTCAGTCGACCTCCAGAAGCTTGTGGCTGATCTGACTGCC
CAGCCTACAAACTCTTCCTCGACGCCTGTTGCTACTCAGTCTAAACAAGCTGTGGATGTCGTCCCTTTGAACTCT
TCCGCCTCTTTGCCATCATCCTCATCTCTGCCCCCGCGGCCTCCGCAGCCGGATACCCAATCGTATTCATCGCAG
CATTTGCCCTCGACAGCCAGCTCCAATGCGCCCATGCCCAATGGAAGCCTTGTACCATCAACATCTGGGCATCCC
CCTGCTGCTATTGCTTCTACTGAAGCCATGGCTATCGCCCCCACATTTGCTACCGTACCGAACGCAACTCCAGCT
TCCAGATCAATGAATGCCGTTGCCTGTCCGCCCCAGACGGCACCAGGGTACCCCGTCAACGGTGCATCCAATACC
GAGTATGAGAATCAATGGGATCGATTTGTCGCTGATGAACGACAATACATGTCGGATGCCAAATGGGACCGTTTC
CCAGAAGGGTCCCGTCTCTTTATCGGCAATCTTTCTAGTGACAAAGTTTCGAAGCGCGACGTCTTTGAAGTATTC
CACAAGTTCGGCAGGCTCGCGCAGATATCTCTAAAATCCGCCTACGGCTTTGTTCAGTACCATGATGTCGAAGAG
GGCCGACGCGCCATGGAACATTTGCAGGGCATTGAGATTAAGGGACGCCGCATCCATCTCGAGGTCTCTCGGGTC
CAGGAAAAGTCCAAAAAAGACCGCGGCCGCAGCCCTGACAGGGCAAGGGGACGCGATTCTGGTCGCAGAGGTGAT
AAACATCACGGCGGTCGCGATGACTACCGGCCGGGTCGCAATCACTCGCCTCGTCGTCATGATCATCACCATGGA
CGCGACGGCGGCCCATCTCGTGACCGCGCCTTTCATGACGGTGGCCGAGGTGCCCGTGGCCGCTCACGGTCGCCT
GTATATGGACGCAACGACCAAGACTCTTATAGACGTCGTAGCCCCAGTCCATATGGCAGGTCGCGGCAAGAGGCC
GAGGTGGATCTTCCTCACAGATTCGGTGCTGATGTGCCCGATGTGCAGATTATATTGCAGCCAGACGTGAACCGT
GACTTTGGCGCATGGGTCGAAGGTGCTTTCAAGGCCAAGGGACTCAAGACCGAGGTCATGTACCTCCATCCGCGA
TTTTCCAGAGATCACGTTATTCAGAGACAGGCAGCTGAAGGTGTTCACGGCGTCGTTGACCTGGACGTGCACGCG
CAATCTGTTGGGCGCATCCCTGTTCAAGCCTTCAAGCGGTCTGGTGGAAGTAGTAAGGTTCGCTTCGACCAGTAC
ATCAACCTAGATCCGGGCACTGCTGCAGAGGTCATTTTGCGTGCCAAGTCAATGGCCGCGGCTACCTATGGGCAA
AGCTACGCCTCGGGGAGCGGATACGGCGCTCCGTATAACGGTGCAGCCCAACACGCTGTCAATTATGGTGCCAAC
CCTTACGCAGCATCGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGTCACAGCAGCAGCCCGTTGCT
CCAAGCGCCGCTGACATTGCTGGCTTGATGGGCCAGTTGGATAATGTGACGCTCCAGCGGCTTCTGTCCTCTATC
CAAGGGTCGGCTCCATCTCACGGCCAAGGTGGCGTTGCCGCTGTACCCGGAGGCTACGGCGTACCTGCTGTGGCT
CAAACTCCGACTAGTCAACCAGTCGATATTCAGACTATCCTGGGCAGCCTCGGTGGCAATGCCTCCACGCATCAG
CATGCCGCATCCCATGCGTCGTATGGCACCACGTATGGCGCTCAGTCCTCAGTGGCCTCAAATGCGGGCGTGCAT
GCGGCGTCGGGAGGTCAAGATACGACGGCACAGGTGCAGCATATCATGGCGCACCTCTCGCGCTTCAGATAG
Gene >OphauB2|4538
ATGACGGAGCCAAAAGCGCAGGTCCAGGCCACTGCCAACTTGTCTCCTGTGTCACCCTCTCCCCTCCACACGGCT
GCCCCCCTGGTGGTGCCAGCCCTGCAGCAAACAGTTGACACCATCGACGCCATGGTTGCTGCCGTCGCTGCTCCA
ACGGCCAGTGCCAACGAAAACAACCGTGATGCGGCTGTTGATTTCGTAGATGATGACAGCTTGGAAGGTGCTTAC
GGCATGGACAACACAAACGCTTCCGATACCCTTCCAGCCCCTCCGCCAGAGGCCGATGCGAACGATGATTATGCC
AAATCTTTCGACTCACCTGTCGAGCCAGACCAAGGTGATGGGCAGAACGGGCAATTGCACAATGTACCATTGTCG
TCGTCGTCAATGCCACCGCCAGACTCGAGCCATATTTCGCTGCCCCTCGAGTCCGTGAGTGCTACCAATGGCCCG
CCAGCCGCTGCTGGCCCCACTGTCGTCTCTCCACAGGCTCACTCTGGACAGCGTCCAGATGCCTCTCCCCCGGCC
ACCGGCTCCTCGCGCCACTCCCAAAAGCCTTTGCACCAAGCTGGCTCCGAGCTCGCACCCGAGTCCGCTGTCGAG
TCTGGCTCGGTAGCTGCCGACTCGCCAGGCTCCTCAGTCGACCTCCAGAAGCTTGTGGCTGATCTGACTGCCCAG
CCTACAAACTCTTCCTCGACGCCTGTTGCTACTCAGTCTAAACAAGCTGTGGATGTCGTCCCTTTGAACTCTTCC
GCCTCTTTGCCATCATCCTCATCTCTGCCCCCGCGGCCTCCGCAGCCGGATACCCAATCGTATTCATCGCAGCAT
TTGCCCTCGACAGCCAGCTCCAATGCGCCCATGCCCAATGGAAGCCTTGTACCATCAACATCTGGGCATCCCCCT
GCTGCTATTGCTTCTACTGAAGCCATGGCTATCGCCCCCACATTTGCTACCGTACCGAACGCAACTCCAGCTTCC
AGATCAATGAATGCCGTTGCCTGTCCGCCCCAGACGGCACCAGGGTACCCCGTCAACGGTGCATCCAATACCGAG
TATGAGAATCAATGGGATCGATTTGTCGCTGATGAACGACAATACATGTCGGATGCCAAATGGGACCGTTTCCCA
GAAGGGTCCCGTCTCTTTATCGGTAACTTTGCCCTCGTGTCTTTAGAAGGACTGCGTACACTTGACCGCAGACTG
ATGCTTTTCCGTGACAGGCAATCTTTCTAGTGACAAAGTTTCGAAGCGCGACGTCTTTGAAGTATTCCACAAGTT
CGGCAGGCTCGCGCAGATATCTCTAAAATCCGCCTACGGCTTTGTTCAGTACCATGATGTCGAAGAGGGCCGACG
CGCCATGGAACATTTGCAGGGCATTGAGATTAAGGGACGCCGCATCCGTAAGCCATGACTTGCTCCCAATGCCAC
CCTTCACCAACACCATACTGACAATGGTCAAGATCTCGAGGTCTCTCGGGTCCAGGAAAAGTCCAAAAAAGACCG
CGGCCGCAGCCCTGACAGGGCAAGGGGACGCGATTCTGGTCGCAGAGGTGATAAACATCACGGCGGTCGCGATGA
CTACCGGCCGGGTCGCAATCACTCGCCTCGTCGTCATGATCATCACCATGGACGCGACGGCGGCCCATCTCGTGA
CCGCGCCTTTCATGACGGTGGCCGAGGTGCCCGTGGCCGCTCACGGTCGCCTGTATATGGACGCAACGACCAAGA
CTCTTATAGACGTCGTAGCCCCAGTCCATATGGCAGGTCGCGGCAAGAGGCCGAGGTGGATCTTCCTCACAGATT
CGGTGCTGATGTGCCCGATGTGCAGATTATATTGCAGCCAGACGTGAACCGTGACTTTGGCGCATGGGTCGAAGG
TGCTTTCAAGGCCAAGGGACTCAAGACCGAGGTCATGTACCTCCATCCGCGATTTTCCAGAGATCACGTTATTCA
GAGACAGGCAGCTGAAGGTGTTCACGGCGTCGTTGACCTGGACGTGCACGCGCAATCTGTTGGGCGCATCCCTGT
TCAAGCCTTCAAGCGGTCTGGTGGAAGTAGTAAGGTTCGCTTCGACCAGTACATCAACCTAGATCCGGGCACTGC
TGCAGAGGTCATTTTGCGTGCCAAGTCAATGGCCGCGGCTACCTATGGGCAAAGCTACGCCTCGGGGAGCGGATA
CGGCGCTCCGTATAACGGTGCAGCCCAACACGCTGTCAATTATGGTGCCAACCCTTACGCAGCATCGCAACAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAACAGTCACAGCAGCAGCCCGTTGCTCCAAGCGCCGCTGACATTGCTGG
CTTGATGGGCCAGTTGGATAATGTGACGCTCCAGCGGCTTCTGTCCTCTATCCAAGGGTCGGCTCCATCTCACGG
CCAAGGTGGCGTTGCCGCTGTACCCGGAGGCTACGGCGTACCTGCTGTGGCTCAAACTCCGACTAGTCAACCAGT
CGATATTCAGACTATCCTGGGCAGCCTCGGTGGCAATGCCTCCACGCATCAGCATGCCGCATCCCATGCGTCGTA
TGGCACCACGTATGGCGCTCAGTCCTCAGTGGCCTCAAATGCGGGCGTGCATGCGGCGTCGGGAGGTCAAGATAC
GACGGCACAGGTGCAGCATATCATGGCGCACCTCTCGCGCTTCAGATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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