© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauB2|4529 |
| Gene name | |
| Location | Contig_30:28084..29887 |
| Strand | + |
| Gene length (bp) | 1803 |
| Transcript length (bp) | 1803 |
| Coding sequence length (bp) | 1803 |
| Protein length (aa) | 601 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00415 | RCC1 | Regulator of chromosome condensation (RCC1) repeat | 3.7E-08 | 346 | 403 |
| PF13540 | RCC1_2 | Regulator of chromosome condensation (RCC1) repeat | 2.0E-09 | 329 | 358 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q08023|FMP25_YEAST | Protein FMP25, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMP25 PE=4 SV=1 | 117 | 543 | 1.0E-30 |
| sp|Q5GLZ8|HERC4_HUMAN | Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 | 263 | 402 | 3.0E-10 |
| sp|Q6PAV2|HERC4_MOUSE | Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=1 SV=2 | 263 | 402 | 1.0E-09 |
| sp|Q5PQN1|HERC4_RAT | Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 | 263 | 402 | 2.0E-09 |
| sp|P28745|RCC1_SCHPO | Protein pim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pim1 PE=1 SV=2 | 118 | 361 | 5.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q08023|FMP25_YEAST | Protein FMP25, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMP25 PE=4 SV=1 | 117 | 543 | 1.0E-30 |
| sp|Q5GLZ8|HERC4_HUMAN | Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 | 263 | 402 | 3.0E-10 |
| sp|Q6PAV2|HERC4_MOUSE | Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=1 SV=2 | 263 | 402 | 1.0E-09 |
| sp|Q5PQN1|HERC4_RAT | Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 | 263 | 402 | 2.0E-09 |
| sp|P28745|RCC1_SCHPO | Protein pim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pim1 PE=1 SV=2 | 118 | 361 | 5.0E-09 |
| sp|Q8IVU3|HERC6_HUMAN | Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2 | 268 | 402 | 6.0E-09 |
| sp|Q8BTU7|RCCD1_MOUSE | RCC1 domain-containing protein 1 OS=Mus musculus GN=Rccd1 PE=2 SV=2 | 264 | 444 | 2.0E-08 |
| sp|Q5PQN1|HERC4_RAT | Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 | 124 | 443 | 3.0E-08 |
| sp|Q6PAV2|HERC4_MOUSE | Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=1 SV=2 | 124 | 443 | 4.0E-08 |
| sp|Q5GLZ8|HERC4_HUMAN | Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 | 124 | 443 | 6.0E-08 |
| sp|F2Z461|HERC6_MOUSE | E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 | 268 | 361 | 8.0E-08 |
| sp|Q15034|HERC3_HUMAN | Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 | 263 | 459 | 9.0E-08 |
| sp|Q4R828|RCCD1_MACFA | RCC1 domain-containing protein 1 OS=Macaca fascicularis GN=RCCD1 PE=2 SV=1 | 251 | 412 | 1.0E-07 |
| sp|P18754|RCC1_HUMAN | Regulator of chromosome condensation OS=Homo sapiens GN=RCC1 PE=1 SV=1 | 171 | 399 | 3.0E-07 |
| sp|F2Z461|HERC6_MOUSE | E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 | 241 | 402 | 4.0E-07 |
| sp|A6NED2|RCCD1_HUMAN | RCC1 domain-containing protein 1 OS=Homo sapiens GN=RCCD1 PE=1 SV=1 | 251 | 444 | 5.0E-07 |
| sp|Q5RCZ7|RCBT2_PONAB | RCC1 and BTB domain-containing protein 2 OS=Pongo abelii GN=RCBTB2 PE=2 SV=1 | 70 | 380 | 8.0E-07 |
| sp|O95199|RCBT2_HUMAN | RCC1 and BTB domain-containing protein 2 OS=Homo sapiens GN=RCBTB2 PE=1 SV=1 | 70 | 380 | 8.0E-07 |
| sp|Q8SSY6|SPKUL_DICDI | Bifunctional serine/threonine-protein kinase/NEDD4-like E3 ubiquitin-protein ligase OS=Dictyostelium discoideum GN=DDB_G0276527 PE=3 SV=2 | 239 | 382 | 4.0E-06 |
| sp|Q9FN03|UVR8_ARATH | Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 | 121 | 395 | 4.0E-06 |
| sp|Q15034|HERC3_HUMAN | Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 | 121 | 376 | 5.0E-06 |
| sp|P23800|RCC1_MESAU | Regulator of chromosome condensation OS=Mesocricetus auratus GN=RCC1 PE=1 SV=1 | 171 | 399 | 5.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.5 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauB2|4529 MKPSHGALGHAARLGSSIGRPIVASPGLWLRHASTTTSRRQPRPRHTAKVAACAAVLAVAAASAYYYSHLFKEQS SEPQAAAKAELEFEKPRKLPLSKEENRELISSQHLQVKNSWEHPGVYLWGSNVGKVVDPGSDDKVVKLPRRLVYL DGQLLRDIKLKQNFGAAITENGDLIQWGVAFSKADARPDKTLTGKDLVKLSVSADRIIALSRAGAVYSVPASRSD LLEGAKLDRKSSWSLWSSGGKETLSFRELTPAKLSRGEKIVQVSSGLEHCLMLTNKGRVFSAASSTLSFPSRGQM GIPGLEWETRPAGAYDQAHEMQTLSGIKVEQIATGDYHSVVLDKLGRVFSFGDNTYGQLGLETDGAMVSVSAPTM VNVNKLYAKSGLVPKVSMIEAGGSNTFFAVDVEMPLGHGTSQAVAPARRMPQGVSDVWACGHGVTGALGTGKWTH VSVAPTKIKALSSLMEFNEASNKMVPIRLKALSVGSTHCSAVMDNVTETSISQRSSKPETNWGADVVFWGGNEYF QLGTGKRSNMNTPGYIGPLDGGEGDEEKGRKGEVHRLCLTPRQTARLGPGAQGRKATLEQKVECGQFVTGVYSAV * |
| Coding | >OphauB2|4529 ATGAAGCCTTCACATGGAGCCCTCGGGCACGCAGCTCGCTTGGGCAGCTCGATAGGGCGGCCAATCGTCGCCTCA CCAGGACTGTGGCTTCGACACGCCAGCACCACTACCTCCCGACGACAGCCTCGTCCACGCCACACAGCCAAGGTA GCTGCTTGTGCCGCCGTCCTGGCCGTTGCAGCAGCGAGCGCGTACTACTATTCCCACCTCTTCAAGGAACAGTCT TCGGAACCGCAAGCCGCAGCAAAGGCTGAGCTGGAGTTTGAAAAGCCACGCAAGCTGCCACTGTCCAAGGAGGAA AACAGGGAGCTTATCAGTTCGCAGCACCTCCAGGTCAAAAATAGCTGGGAGCATCCGGGAGTTTATCTCTGGGGG TCCAATGTGGGAAAGGTGGTGGATCCAGGCTCCGACGACAAGGTTGTCAAGCTGCCTCGAAGACTTGTCTACTTG GATGGCCAGCTCTTGAGAGACATCAAGCTCAAGCAAAATTTCGGGGCTGCCATTACGGAAAACGGAGATCTCATA CAATGGGGCGTGGCCTTTTCCAAGGCAGATGCACGGCCAGATAAAACGCTCACGGGCAAAGACTTGGTCAAGCTT AGCGTGTCGGCTGATCGCATCATTGCGCTGTCTCGCGCAGGGGCCGTGTACTCGGTACCGGCATCGCGCAGTGAC CTGCTGGAGGGTGCCAAGCTTGACAGGAAAAGCTCGTGGTCTCTGTGGAGCTCTGGTGGAAAAGAGACGTTGAGC TTCCGAGAACTGACGCCGGCCAAGCTGAGTCGGGGCGAAAAGATTGTCCAAGTCAGCAGCGGACTGGAGCACTGC CTCATGCTGACCAACAAGGGACGCGTGTTTTCTGCGGCTTCAAGCACTCTCTCGTTCCCCTCTCGTGGACAAATG GGCATTCCTGGTCTTGAGTGGGAGACAAGACCAGCCGGGGCGTACGACCAAGCTCACGAGATGCAGACGCTGTCA GGGATCAAGGTGGAACAAATTGCTACAGGTGACTATCACTCTGTAGTCCTGGACAAGCTGGGGAGGGTATTCTCC TTTGGCGACAACACGTACGGGCAGCTGGGGCTCGAGACAGATGGCGCCATGGTCAGTGTGTCTGCGCCGACAATG GTCAATGTCAACAAACTCTACGCCAAGAGTGGCTTGGTGCCCAAGGTGAGCATGATTGAAGCCGGAGGCAGCAAT ACTTTCTTCGCTGTGGATGTCGAAATGCCATTGGGCCATGGCACGAGCCAGGCAGTAGCGCCGGCTAGACGGATG CCTCAGGGTGTATCGGATGTCTGGGCCTGTGGGCATGGCGTGACGGGAGCGCTAGGCACGGGCAAGTGGACACAC GTGTCGGTAGCGCCAACCAAGATCAAGGCGCTGTCGTCGCTCATGGAGTTTAACGAGGCAAGCAACAAGATGGTG CCCATCAGGCTCAAGGCCTTGAGCGTGGGATCGACACACTGCTCGGCCGTCATGGACAATGTGACGGAGACGAGC ATCTCGCAGCGGTCGAGCAAACCCGAAACCAACTGGGGCGCCGACGTTGTGTTTTGGGGTGGCAATGAGTATTTC CAGCTGGGGACTGGCAAGCGGTCCAATATGAACACGCCGGGTTACATTGGGCCACTGGACGGTGGCGAAGGCGAC GAGGAAAAGGGGCGCAAGGGCGAGGTGCACCGTCTGTGTCTAACACCGCGACAGACGGCGCGGCTGGGACCCGGA GCCCAGGGCCGCAAGGCGACGCTGGAGCAAAAGGTCGAATGTGGTCAGTTTGTGACGGGAGTCTACTCTGCGGTG TGA |
| Transcript | >OphauB2|4529 ATGAAGCCTTCACATGGAGCCCTCGGGCACGCAGCTCGCTTGGGCAGCTCGATAGGGCGGCCAATCGTCGCCTCA CCAGGACTGTGGCTTCGACACGCCAGCACCACTACCTCCCGACGACAGCCTCGTCCACGCCACACAGCCAAGGTA GCTGCTTGTGCCGCCGTCCTGGCCGTTGCAGCAGCGAGCGCGTACTACTATTCCCACCTCTTCAAGGAACAGTCT TCGGAACCGCAAGCCGCAGCAAAGGCTGAGCTGGAGTTTGAAAAGCCACGCAAGCTGCCACTGTCCAAGGAGGAA AACAGGGAGCTTATCAGTTCGCAGCACCTCCAGGTCAAAAATAGCTGGGAGCATCCGGGAGTTTATCTCTGGGGG TCCAATGTGGGAAAGGTGGTGGATCCAGGCTCCGACGACAAGGTTGTCAAGCTGCCTCGAAGACTTGTCTACTTG GATGGCCAGCTCTTGAGAGACATCAAGCTCAAGCAAAATTTCGGGGCTGCCATTACGGAAAACGGAGATCTCATA CAATGGGGCGTGGCCTTTTCCAAGGCAGATGCACGGCCAGATAAAACGCTCACGGGCAAAGACTTGGTCAAGCTT AGCGTGTCGGCTGATCGCATCATTGCGCTGTCTCGCGCAGGGGCCGTGTACTCGGTACCGGCATCGCGCAGTGAC CTGCTGGAGGGTGCCAAGCTTGACAGGAAAAGCTCGTGGTCTCTGTGGAGCTCTGGTGGAAAAGAGACGTTGAGC TTCCGAGAACTGACGCCGGCCAAGCTGAGTCGGGGCGAAAAGATTGTCCAAGTCAGCAGCGGACTGGAGCACTGC CTCATGCTGACCAACAAGGGACGCGTGTTTTCTGCGGCTTCAAGCACTCTCTCGTTCCCCTCTCGTGGACAAATG GGCATTCCTGGTCTTGAGTGGGAGACAAGACCAGCCGGGGCGTACGACCAAGCTCACGAGATGCAGACGCTGTCA GGGATCAAGGTGGAACAAATTGCTACAGGTGACTATCACTCTGTAGTCCTGGACAAGCTGGGGAGGGTATTCTCC TTTGGCGACAACACGTACGGGCAGCTGGGGCTCGAGACAGATGGCGCCATGGTCAGTGTGTCTGCGCCGACAATG GTCAATGTCAACAAACTCTACGCCAAGAGTGGCTTGGTGCCCAAGGTGAGCATGATTGAAGCCGGAGGCAGCAAT ACTTTCTTCGCTGTGGATGTCGAAATGCCATTGGGCCATGGCACGAGCCAGGCAGTAGCGCCGGCTAGACGGATG CCTCAGGGTGTATCGGATGTCTGGGCCTGTGGGCATGGCGTGACGGGAGCGCTAGGCACGGGCAAGTGGACACAC GTGTCGGTAGCGCCAACCAAGATCAAGGCGCTGTCGTCGCTCATGGAGTTTAACGAGGCAAGCAACAAGATGGTG CCCATCAGGCTCAAGGCCTTGAGCGTGGGATCGACACACTGCTCGGCCGTCATGGACAATGTGACGGAGACGAGC ATCTCGCAGCGGTCGAGCAAACCCGAAACCAACTGGGGCGCCGACGTTGTGTTTTGGGGTGGCAATGAGTATTTC CAGCTGGGGACTGGCAAGCGGTCCAATATGAACACGCCGGGTTACATTGGGCCACTGGACGGTGGCGAAGGCGAC GAGGAAAAGGGGCGCAAGGGCGAGGTGCACCGTCTGTGTCTAACACCGCGACAGACGGCGCGGCTGGGACCCGGA GCCCAGGGCCGCAAGGCGACGCTGGAGCAAAAGGTCGAATGTGGTCAGTTTGTGACGGGAGTCTACTCTGCGGTG TGA |
| Gene | >OphauB2|4529 ATGAAGCCTTCACATGGAGCCCTCGGGCACGCAGCTCGCTTGGGCAGCTCGATAGGGCGGCCAATCGTCGCCTCA CCAGGACTGTGGCTTCGACACGCCAGCACCACTACCTCCCGACGACAGCCTCGTCCACGCCACACAGCCAAGGTA GCTGCTTGTGCCGCCGTCCTGGCCGTTGCAGCAGCGAGCGCGTACTACTATTCCCACCTCTTCAAGGAACAGTCT TCGGAACCGCAAGCCGCAGCAAAGGCTGAGCTGGAGTTTGAAAAGCCACGCAAGCTGCCACTGTCCAAGGAGGAA AACAGGGAGCTTATCAGTTCGCAGCACCTCCAGGTCAAAAATAGCTGGGAGCATCCGGGAGTTTATCTCTGGGGG TCCAATGTGGGAAAGGTGGTGGATCCAGGCTCCGACGACAAGGTTGTCAAGCTGCCTCGAAGACTTGTCTACTTG GATGGCCAGCTCTTGAGAGACATCAAGCTCAAGCAAAATTTCGGGGCTGCCATTACGGAAAACGGAGATCTCATA CAATGGGGCGTGGCCTTTTCCAAGGCAGATGCACGGCCAGATAAAACGCTCACGGGCAAAGACTTGGTCAAGCTT AGCGTGTCGGCTGATCGCATCATTGCGCTGTCTCGCGCAGGGGCCGTGTACTCGGTACCGGCATCGCGCAGTGAC CTGCTGGAGGGTGCCAAGCTTGACAGGAAAAGCTCGTGGTCTCTGTGGAGCTCTGGTGGAAAAGAGACGTTGAGC TTCCGAGAACTGACGCCGGCCAAGCTGAGTCGGGGCGAAAAGATTGTCCAAGTCAGCAGCGGACTGGAGCACTGC CTCATGCTGACCAACAAGGGACGCGTGTTTTCTGCGGCTTCAAGCACTCTCTCGTTCCCCTCTCGTGGACAAATG GGCATTCCTGGTCTTGAGTGGGAGACAAGACCAGCCGGGGCGTACGACCAAGCTCACGAGATGCAGACGCTGTCA GGGATCAAGGTGGAACAAATTGCTACAGGTGACTATCACTCTGTAGTCCTGGACAAGCTGGGGAGGGTATTCTCC TTTGGCGACAACACGTACGGGCAGCTGGGGCTCGAGACAGATGGCGCCATGGTCAGTGTGTCTGCGCCGACAATG GTCAATGTCAACAAACTCTACGCCAAGAGTGGCTTGGTGCCCAAGGTGAGCATGATTGAAGCCGGAGGCAGCAAT ACTTTCTTCGCTGTGGATGTCGAAATGCCATTGGGCCATGGCACGAGCCAGGCAGTAGCGCCGGCTAGACGGATG CCTCAGGGTGTATCGGATGTCTGGGCCTGTGGGCATGGCGTGACGGGAGCGCTAGGCACGGGCAAGTGGACACAC GTGTCGGTAGCGCCAACCAAGATCAAGGCGCTGTCGTCGCTCATGGAGTTTAACGAGGCAAGCAACAAGATGGTG CCCATCAGGCTCAAGGCCTTGAGCGTGGGATCGACACACTGCTCGGCCGTCATGGACAATGTGACGGAGACGAGC ATCTCGCAGCGGTCGAGCAAACCCGAAACCAACTGGGGCGCCGACGTTGTGTTTTGGGGTGGCAATGAGTATTTC CAGCTGGGGACTGGCAAGCGGTCCAATATGAACACGCCGGGTTACATTGGGCCACTGGACGGTGGCGAAGGCGAC GAGGAAAAGGGGCGCAAGGGCGAGGTGCACCGTCTGTGTCTAACACCGCGACAGACGGCGCGGCTGGGACCCGGA GCCCAGGGCCGCAAGGCGACGCTGGAGCAAAAGGTCGAATGTGGTCAGTTTGTGACGGGAGTCTACTCTGCGGTG TGA |